For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VVGCGNLLRGDDGVGPVLVRHLWERGVPAGARLVDGGTAGMDVAFQMRGAERVVIIDAAATGSAPGTVFR VPGEELAELPPLQGLHTHSFRWDHAIAFARWALADDCPTDITVFLIEAENVDFGAELSERVSAAMEEVIA LIERDYLGPLRPQAADEVEVEITEDGYLRLTADVAAARFPSDAVAAMVRDDDLWVIPLRGPRSGGLLLKQ RNPAGDRSVLIAEVLRDQTRVEVRETLLSGPHRAFWDDEKSALRIPIPADLREAR
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. smegmatis MC2 155 | MSMEG_2264 | - | - | 100% (265) | peptidase M52, hydrogen uptake protein |
M. smegmatis MC2 155 | MSMEG_2713 | - | 5e-10 | 30.32% (155) | peptidase M52, hydrogen uptake protein |
M. smegmatis MC2 155 | MSMEG_3927 | - | 9e-10 | 30.14% (146) | peptidase M52, hydrogen uptake protein |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | - | - | - | - | - |
M. gilvum PYR-GCK | - | - | - | - | - |
M. tuberculosis H37Rv | - | - | - | - | - |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | - | - | - | - | - |
M. marinum M | MMAR_1864 | hyaD | 9e-10 | 30.36% (168) | nickel/iron hydrogenase maturation factor, HyaD |
M. avium 104 | MAV_2687 | - | 1e-07 | 38.57% (70) | peptidase M52, hydrogen uptake protein |
M. thermoresistible (build 8) | TH_1029 | - | 1e-108 | 74.71% (257) | peptidase M52, hydrogen uptake protein |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_2367 | - | 1e-111 | 76.26% (257) | hydrogenase maturation protease |
CLUSTAL 2.0.9 multiple sequence alignment MSMEG_2264|M.smegmatis_MC2_155 ------------------------------------------------MV Mvan_2367|M.vanbaalenii_PYR-1 ------------------------------------------------MI TH_1029|M.thermoresistible__bu ----------------------------VIPTSAEADIDIEPPGCAVLVV MMAR_1864|M.marinum_M ------------------------------------------MTARILVA MAV_2687|M.avium_104 MGVYRHPVADRPGSSDLGTHIPSGRKALPAHPTDVKQPDRGNVTSRILIA : MSMEG_2264|M.smegmatis_MC2_155 GCGNLLRGDDGVGPVLVRHLWERG-VPAGARLVDGGTAGMDVAFQMRG-A Mvan_2367|M.vanbaalenii_PYR-1 GCGNLLRGDDGVGPVLVRHLWERG-VPDGAKLVDGGTAGMDVAFQMNG-A TH_1029|M.thermoresistible__bu GCGNLLRGDDGVGPILIRHLWERG-VPDGARLVDGGTAGMDVAFQMKG-A MMAR_1864|M.marinum_M GIGNIFLGDDGFGSEVVRR-ADIPQNDPGVRVIDYGIRGMHLAYDLLDSW MAV_2687|M.avium_104 GIGNIFLGDDGFGPEVLRHVAPRFAAAEQVRAIDYGIGGMHLAYDLLEDW * **:: ****.*. ::*: .: :* * **.:*::: MSMEG_2264|M.smegmatis_MC2_155 ERVVIIDAAATGSAPGTVFRVP---GEELAELPPLQGLHTHSFRWDHAIA Mvan_2367|M.vanbaalenii_PYR-1 RRVVIIDAAATGSAPGTTFRVP---GAELAELPPLQGLHTHSFRWDHAIA TH_1029|M.thermoresistible__bu QRVVIVDAALTGAAPGTVYRVP---GAELAELPPLQGLHTHSFRWDHSIA MMAR_1864|M.marinum_M DTLVLVDAVPSRGNPGTLHVFQADFEADQASWSEAPGLDAHGM--DPGTV MAV_2687|M.avium_104 DALVLVDAVPNQGAPGTVCVF----EADHASLSTTAELDAHGM--DPAAV :*::**. . . *** . : *. . *.:*.: * . . MSMEG_2264|M.smegmatis_MC2_155 FARWALADDCPTDITVFLIEAENVDFGAELSERVSAAMEEVIALIERDYL Mvan_2367|M.vanbaalenii_PYR-1 FARWALGDACPTDITVFLIEVDSVEMGADLSEPVATAMEEVLSIVERDYL TH_1029|M.thermoresistible__bu FARWALGDACPDDITVFLIEAGGVELGAELSAPVAAAMEEVIELIEAEFL MMAR_1864|M.marinum_M FANLRALGGNPPYTVVVGCEAGSVEEGIGLTEPVAKAVPRAARAVEEIVA MAV_2687|M.avium_104 FASLQALGGAP-------------------CPPSSSAFSGLSRAARERIG ** . * : *. . MSMEG_2264|M.smegmatis_MC2_155 GPLRPQAADEVEVEITEDGYLRLTADVAAARFPSDAVAAMVRDDDLWVIP Mvan_2367|M.vanbaalenii_PYR-1 APLRPAGRREVTVEFTADGYLRLDAELAAARFPSDAVAAVVRDGALWLIP TH_1029|M.thermoresistible__bu AGLRPRPDGRAKVEFTADGYLRLDATLAASRFPSDAVAAVRRDTELWVLP MMAR_1864|M.marinum_M ALQGPATAQSTGEEV----------------------------------- MAV_2687|M.avium_104 GSNSPMGWWRAQLL------------------------------------ . * . MSMEG_2264|M.smegmatis_MC2_155 LRGPRSGGLLLKQRNPAGDRSVLIAEVLRDQTRVEVRETLLSGPHRAFWD Mvan_2367|M.vanbaalenii_PYR-1 LRGPRSGGLLLKQRTPAGDRSLLVREVLMDLAMTGVRG--------ASWD TH_1029|M.thermoresistible__bu LRGPRSGGLLLKQRTPAGDRAVLVREVLNDDIPVGVRE--------AFWD MMAR_1864|M.marinum_M -------------------------------------------------- MAV_2687|M.avium_104 -------------------------------------------------- MSMEG_2264|M.smegmatis_MC2_155 DEKSALRIPIPADLREAR Mvan_2367|M.vanbaalenii_PYR-1 DDQSALRIPLGDEPGLDR TH_1029|M.thermoresistible__bu DGRSALRIPLGSHV---- MMAR_1864|M.marinum_M ------------------ MAV_2687|M.avium_104 ------------------