For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VDKRELGAFLRSRRERISPAEVGLPVGTRRRTPGLRRDEVAHLAFISTEYYTRLEQARAPHPSREVLEGL SRALRLPDAERAHLYQLAGVVPQRPVGPPRVVRQSILDLLQRLSHAAAIVVSATNEVLAWNDLACALMED FSALSRRDRNLIRRAFLGPDGPGGRRLYGVSDVEEFARTSAKHLRAAVARYPDDPETQELVDELLAGSEE FVRLWESHDIVDRPVLCKTFVHPAVGPVSVNCDALDIADRDQCLVIYTAEPGSPSEEAMRLLAVLGTQQM DVPG
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. smegmatis MC2 155 | MSMEG_1631 | - | - | 100% (284) | DNA-binding protein |
M. smegmatis MC2 155 | MSMEG_0523 | - | 6e-52 | 46.57% (277) | DNA-binding protein |
M. smegmatis MC2 155 | MSMEG_2428 | - | 2e-49 | 43.97% (282) | DNA-binding protein |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | - | - | - | - | - |
M. gilvum PYR-GCK | Mflv_5170 | - | 2e-25 | 33.09% (272) | XRE family transcriptional regulator |
M. tuberculosis H37Rv | - | - | - | - | - |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_3069c | - | 2e-44 | 37.55% (277) | putative DNA-binding protein |
M. marinum M | - | - | - | - | - |
M. avium 104 | - | - | - | - | - |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_1062 | - | 1e-47 | 40.44% (272) | XRE family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment MAB_3069c|M.abscessus_ATCC_199 MDKRAAAVQDARMIDRAGLAGFLRSRREAMQPDDVGLPRGQRRRTRGLRR Mvan_1062|M.vanbaalenii_PYR-1 MDQRQ-------------LADFLRTRREALTPADVGLPTGRRRRTAGLRR MSMEG_1631|M.smegmatis_MC2_155 MDKRE-------------LGAFLRSRRERISPAEVGLPVGTRRRTPGLRR Mflv_5170|M.gilvum_PYR-GCK MDTRAQR--------RLALGEFLRARREAIRRADVGLPELPRARTGGLRR ** * *. ***:*** : :**** * ** **** MAB_3069c|M.abscessus_ATCC_199 EEVAALCHMSTDYYARLEGARGPQPSEQMIAAIAQGLHLSREERDHLFRL Mvan_1062|M.vanbaalenii_PYR-1 EEVAALAMISTDYYSRMEQQRGPQPSVDVLASLARALQLTLDERDHLFRL MSMEG_1631|M.smegmatis_MC2_155 DEVAHLAFISTEYYTRLEQARAPHPSREVLEGLSRALRLPDAERAHLYQL Mflv_5170|M.gilvum_PYR-GCK EEVAVTAGVSVTWYTWLEQGRDINPSKQVLDAVADALRLSPAEHEYVLAL :*** . :*. :*: :* * :** ::: .:: .*:*. *: :: * MAB_3069c|M.abscessus_ATCC_199 AGHQPPASGGESEYISPGLMRIFDRLTPDTAAEIVTELGETLRQTPLGIA Mvan_1062|M.vanbaalenii_PYR-1 AGHNAPARTPAGEQVSTAMLRILDRLS-DTPAQVMSALGETLVQTPAARA MSMEG_1631|M.smegmatis_MC2_155 AGVVPQRPVGPPRVVRQSILDLLQRLS-HAAAIVVSATNEVLAWNDLACA Mflv_5170|M.gilvum_PYR-GCK GGYAVDAAVSRG-PLPPHIQHFLDALEGYPAFAITPDWG-IAAWNTTYAA .* : : ::: * .. : . . . * MAB_3069c|M.abscessus_ATCC_199 LAGDLTRYAGPARSIGYRWFTDP---ATRSIHPVEDHQFYSRMYASGLRR Mvan_1062|M.vanbaalenii_PYR-1 LLGDETTYRGLARSVVYRWFTDP---TSRSVYPAEDHAAIGRNYVAAARM MSMEG_1631|M.smegmatis_MC2_155 LMEDFSALSRRDRNLIRRAFLGPDGPGGRRLYGVSDVEEFARTSAKHLRA Mflv_5170|M.gilvum_PYR-GCK LYPNVERVPETDRNLLWLVFTDP-----YIHELLPNWDTDSRRFLAEFRA * : *.: * .* : .* * MAB_3069c|M.abscessus_ATCC_199 VLAARGPGSKAARFAELLNAESEQFRALWKEHEVGVMPKEMKRFRHPEVG Mvan_1062|M.vanbaalenii_PYR-1 GYTRDGAGSRAAEIVDDLLSRSDEFAELWKQHLVGTAHELDKRLVHPALG MSMEG_1631|M.smegmatis_MC2_155 AVARYPDDPETQELVDELLAGSEEFVRLWESHDIVDRPVLCKTFVHPAVG Mflv_5170|M.gilvum_PYR-GCK DAGPRVGEPSYTALVSRLSSESPHFAAAWQATSIERFTSRERLFRHPAAG . :.. * : * .* *: : : : ** * MAB_3069c|M.abscessus_ATCC_199 LLELN-CQILLDPVESTSLLVYTAVPGSESYEKLQLLAIIGASSPPGR-- Mvan_1062|M.vanbaalenii_PYR-1 VLELQ-CQILHDPAQLHTLLVFTAEPGTPSHAKLAALGADPQSYRRGRSI MSMEG_1631|M.smegmatis_MC2_155 PVSVN-CDALDIADRDQCLVIYTAEPGSPSEEAMRLLAVLGTQQMDVPG- Mflv_5170|M.gilvum_PYR-GCK ELRLEHHQVAPVDVPDIQIVAYLPVPDSVASERLRMLTGQADTAR----- : :: : :: : . *.: : : * MAB_3069c|M.abscessus_ATCC_199 ------- Mvan_1062|M.vanbaalenii_PYR-1 NGSTVPE MSMEG_1631|M.smegmatis_MC2_155 ------- Mflv_5170|M.gilvum_PYR-GCK -------