For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. smegmatis MC2 155 MSMEG_0520 (-)

annotation: porin
coordinates: 600086 - 600733
length: 215

MTAFKRVLIAMISALLAGTTGMFVSAGAAHAGLDNELSLVDGQDRTLTVQQWDTFLNGVFPLDRNRLTRE
WFHSGRAKYIVAGPGADEFEGTLELGYQIGFPWSLGVGINFSYTTPNILIDDGDITAPPFGLNSVITPNL
FPGVSISADLGNGPGIQEVATFSVDVSGPAGGVAVSNAHGTVTGAAGGVLLRPFARLIASTGDSVTTYGE
PWNMN
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. smegmatis MC2 155MSMEG_0520--100% (215)porin
M. smegmatis MC2 155MSMEG_5483-e-11794.42% (215) porin
M. smegmatis MC2 155MSMEG_0965-e-11291.63% (215) porin

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97-----
M. gilvum PYR-GCKMflv_1891-5e-9679.19% (221) hypothetical protein Mflv_1891
M. tuberculosis H37Rv-----
M. leprae Br4923-----
M. abscessus ATCC 19977MAB_1081-4e-7867.28% (217) porin precursor
M. marinum M-----
M. avium 104MAV_3943-2e-0528.86% (149) hypothetical protein MAV_3943
M. thermoresistible (build 8)TH_1730-1e-10589.55% (201) MspD protein
M. ulcerans Agy99-----
M. vanbaalenii PYR-1Mvan_4840-3e-9579.07% (215) hypothetical protein Mvan_4840

CLUSTAL 2.0.9 multiple sequence alignment


Mflv_1891|M.gilvum_PYR-GCK          ----MKAITRVLIAMVASIAA-------LFVSTGTSHAGLDNELS-----
Mvan_4840|M.vanbaalenii_PYR-1       ----MKAISRVLIAVVASIAA-------LFVSTGTSHAGLDNELS-----
MSMEG_0520|M.smegmatis_MC2_155      ----MTAFKRVLIAMISALLAGT---TGMFVSAGAAHAGLDNELS-----
TH_1730|M.thermoresistible__bu      --------------MATAVAA-------LVVSPGTAHAGLDNELS-----
MAB_1081|M.abscessus_ATCC_1997      --MRTVGIRRVVQSTLTSLILVVGMVGLTVIGTGTAHAGLDDELT-----
MAV_3943|M.avium_104                MVVRRALVAAVCLALSLPTAPTTGADPDAAPPPPEAAPAAEGALPSNPPA
                                                     .              .  : .. :. *.     

Mflv_1891|M.gilvum_PYR-GCK          -VVDGQGRTLTVQQWDTFLNGVFPLDRNRLTREWFHSGKATYIVAGEGAD
Mvan_4840|M.vanbaalenii_PYR-1       -LVDGQGRTLTVQQWDTFLNGVFPLDRNRLTREWFHSGKATYIVAGEGAD
MSMEG_0520|M.smegmatis_MC2_155      -LVDGQDRTLTVQQWDTFLNGVFPLDRNRLTREWFHSGRAKYIVAGPGAD
TH_1730|M.thermoresistible__bu      -LVDGQDRTLTVQQWDTFLNGVFPLDRNRLTREWFHSGRAKYRVEGPGAE
MAB_1081|M.abscessus_ATCC_1997      -LVDGKGRLLRIQQWDTFLNGVFPLDRNRLTREWFHSGRAAYEVTGAGSD
MAV_3943|M.avium_104                ILKTPDGWTLGLGARDEQQVPVAPLTTALSSREYLASG--IFVGSLSGPT
                                     :   ..  * :   *     * **     :**:: **   :     *. 

Mflv_1891|M.gilvum_PYR-GCK          DFEGTLELGYQVGFPWSLG--VGINFSYTTPNIAFDGYGLDLATPDDPFL
Mvan_4840|M.vanbaalenii_PYR-1       DFEGTLELGYQVGFPWSLG--VGINFSYTTPNIAFDGWGLD----DN---
MSMEG_0520|M.smegmatis_MC2_155      EFEGTLELGYQIGFPWSLG--VGINFSYTTPNILIDDGDIT----APPFG
TH_1730|M.thermoresistible__bu      DFEGTLELGYQIGFPWSLG--VGINFSYTTPNILIDGGDIT----GPPFG
MAB_1081|M.abscessus_ATCC_1997      TFEGTLELGYQVGYPWSLG--VGLNFNYTTPNTSILYGIPN----AFGGT
MAV_3943|M.avium_104                QPQGVLEVGYEIGCGIDMSTSDGVTIGGTAGITPGVTGPVTG--------
                                      :*.**:**::*   .:.   *:.:. *:                    

Mflv_1891|M.gilvum_PYR-GCK          GLADSIVTPPLFPGVSISADLGNGPG-IQEVATFSVDVAGPGGSVVVSNA
Mvan_4840|M.vanbaalenii_PYR-1       -LADSIVTPPLFPGVSISADLGNGPG-IQEVATFSVDVAGPGGSVAVSNA
MSMEG_0520|M.smegmatis_MC2_155      --LNSVITPNLFPGVSISADLGNGPG-IQEVATFSVDVSGPAGGVAVSNA
TH_1730|M.thermoresistible__bu      --LDSVITPNLFPGVSISADLGNGPG-IQEVATFSVDVAGPSGKVAVSNA
MAB_1081|M.abscessus_ATCC_1997      PEASYVQTTNLLPSAGINVDLGNGPG-IQEVATFSVAIAGPKGAVAVSNA
MAV_3943|M.avium_104                --VPGDVLPLVVAPIAGVLNVGLKPGLVIVVPVVKKQFRGPNPWVMVSNF
                                            . :..  .   ::*  ** :  *....  . **   * *** 

Mflv_1891|M.gilvum_PYR-GCK          HGTVTGAAGGVLLRPFARL--ISSTGDSVSTYGEPWNMN
Mvan_4840|M.vanbaalenii_PYR-1       HGTVTGAAGGVLLRPFARL--ISSTGDSVTTYGAPWNMN
MSMEG_0520|M.smegmatis_MC2_155      HGTVTGAAGGVLLRPFARL--IASTGDSVTTYGEPWNMN
TH_1730|M.thermoresistible__bu      HGTVTGAAGGVLLRPFARL--IASTGDSVTTYGEPWNMN
MAB_1081|M.abscessus_ATCC_1997      HGTVTGAAGGVLLRPYARL--ISSAGDSVTTYGETWDMK
MAV_3943|M.avium_104                HVKIDGCVGQSFIRSYAVLNRVTDESDVVLSYVGVTKAV
                                    * .: *..*  ::*.:* *  ::. .* * :*    .