For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MTFIDAAAQSRTFARARGDLLEGFRRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTALAMGGLYSKL FHLELSAHLPYVTLGLIIWNLINAAILDGADVFVSNEGLIKQLPAPLSVHVYRLVWRQVIFFAHNIVIYF VVAIIFPKPWSWADLSVVPALGLIVLNCVWVSICFGILATRYRDIAPLLNSLVQLLFFMTPIIWNDETLH RQGAGRWSRIVELNPLLHYLDIVRAPLLGAHQELRHWLVVIALTIVGWVLAAFAMRQYRARVPYWV
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_5338 | rfbD | - | 100% (276) | O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter RfbD |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3812 | rfbD | 1e-148 | 88.57% (280) | O-antigen/lipopolysaccharide transport integral membrane |
| M. gilvum PYR-GCK | Mflv_1184 | - | 1e-136 | 81.16% (276) | ABC-2 type transporter |
| M. tuberculosis H37Rv | Rv3783 | rfbD | 1e-148 | 88.57% (280) | O-antigen/lipopolysaccharide transport integral membrane |
| M. leprae Br4923 | MLBr_00112 | - | 1e-142 | 84.42% (276) | putative ABC transporter component |
| M. abscessus ATCC 19977 | MAB_0201c | - | 1e-112 | 67.03% (273) | O-antigen/lipopolysaccharide transport integral membrane |
| M. avium 104 | MAV_0236 | - | 1e-147 | 87.68% (276) | O-antigen export system, permease protein |
| M. smegmatis MC2 155 | MSMEG_6369 | - | 1e-136 | 80.07% (276) | O-antigen export system, permease protein |
| M. thermoresistible (build 8) | TH_1670 | - | 1e-136 | 81.16% (276) | PROBABLE O-ANTIGEN/LIPOPOLYSACCHARIDE TRANSPORT INTEGRAL |
| M. ulcerans Agy99 | MUL_0090 | rfbD | 1e-161 | 98.19% (276) | O-antigen/lipopolysaccharide transport integral membrane |
| M. vanbaalenii PYR-1 | Mvan_5620 | - | 1e-137 | 80.80% (276) | ABC-2 type transporter |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_5338|M.marinum_M ------------------------------------------MTFIDAAA
MUL_0090|M.ulcerans_Agy99 MAEVRLVLPGDPPRPQGSAGVDSVAPLGASREVRRARSWRIQMTFIDAAA
Mb3812|M.bovis_AF2122/97 ------------------------------------------MTFMDAQA
Rv3783|M.tuberculosis_H37Rv ------------------------------------------MTFMDAQA
MLBr_00112|M.leprae_Br4923 ------------------------------------------MTFVDAAA
MAV_0236|M.avium_104 ------------------------------------------MTFLDAAA
MSMEG_6369|M.smegmatis_MC2_155 ------------------------------------------MTFTDAAA
TH_1670|M.thermoresistible__bu ------------------------------------------LTITDATA
Mflv_1184|M.gilvum_PYR-GCK ------------------------------------------MTIMDAAA
Mvan_5620|M.vanbaalenii_PYR-1 ------------------------------------------MTIMDAAA
MAB_0201c|M.abscessus_ATCC_199 ----------------------MSSSAGLTSQRPGSKENDMANELIELSS
: : :
MMAR_5338|M.marinum_M ----QSRTFARARGDLLEGFRRHELWLHLGWQDIKQRYRRSVLGPFWITI
MUL_0090|M.ulcerans_Agy99 ----QSRTFARARGDLLEGFRRHELWLHLGWQDIKQRYRRSVLGPFWITI
Mb3812|M.bovis_AF2122/97 SFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITI
Rv3783|M.tuberculosis_H37Rv SFQTQSRTLARVRGDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITI
MLBr_00112|M.leprae_Br4923 ----QSRTLARARSDLIEGLHRHELWLHLGWQDIKQRYRRSVLGPFWITI
MAV_0236|M.avium_104 ----QSRTLRRARSDLVDGFRRHELWLHLGWQDIKQRYRRSVLGPFWITI
MSMEG_6369|M.smegmatis_MC2_155 ----QSKTMARARRDLVEGFAKRELWAHLGWQDIKQRYRRSVLGPFWITI
TH_1670|M.thermoresistible__bu ----QSRTFRRAWRDLTEGFGKYELWLHLGWQDIKQRYRRSVLGPFWITI
Mflv_1184|M.gilvum_PYR-GCK ----RSRTFGRAWGDLVAGFGKRELWLHLGWQDIKQRYRRSVLGPFWITI
Mvan_5620|M.vanbaalenii_PYR-1 ----QSRTFARAWGDLVAGFGKRELWLHLGWQDIKQRYRRSVLGPFWITI
MAB_0201c|M.abscessus_ATCC_199 ----DSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITI
*:*: *. ** *: : :** :**********************
MMAR_5338|M.marinum_M ATGTTALAMGGLYSKLFHLELSAHLPYVTLGLIIWNLINAAILDGADVFV
MUL_0090|M.ulcerans_Agy99 ATGTTALAMGGLYSKLFHLELSAHLPYVTLGLIIWNLINAAILDGADVFV
Mb3812|M.bovis_AF2122/97 ATGTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFV
Rv3783|M.tuberculosis_H37Rv ATGTTAVAMGGLYSKLFRLELSEHLPYVTLGLIVWNLINAAILDGAEVFV
MLBr_00112|M.leprae_Br4923 ATGTTSIAMGGLYSKLFHLDLSVHLPYVTLGLIIWNLINAAILEGAEVFV
MAV_0236|M.avium_104 ATGTTAVAMGGLYSKLFHLELSVHLPYVTLGLIIWNLINAAILEGADVFV
MSMEG_6369|M.smegmatis_MC2_155 ATGATAVAMGVLYSKLFKLELSEHLPYVTLGLIIWNLINASILEGAEVFI
TH_1670|M.thermoresistible__bu ATGTTAVAMGGLYSALFKLELSEHLPYVTLGLIIWNLINASILEGAEVFI
Mflv_1184|M.gilvum_PYR-GCK ATGTTAVAMGGLYSMLFKLELSEHLPYVTLGLIVWNLINASILEGADVFV
Mvan_5620|M.vanbaalenii_PYR-1 ATGTTAVAMGGLYSMLFKLELSEHLPYVTLGLIVWNLINASILEGAEVFI
MAB_0201c|M.abscessus_ATCC_199 ATGSTALAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFV
***:*::*** *** **:* *: ******:***:***:**:**:*::**:
MMAR_5338|M.marinum_M SNEGLIKQLPAPLSVHVYRLVWRQVIFFAHNIVIYFVVAIIFPKPWSWAD
MUL_0090|M.ulcerans_Agy99 SNEGLIKQLPAPLSVHIYRLVWRQMIFFAHNIVIYFVVAIIFPKPWSWAD
Mb3812|M.bovis_AF2122/97 ANEGLIKQLPAPLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWAD
Rv3783|M.tuberculosis_H37Rv ANEGLIKQLPAPLSVHVYRLVWRQMIFFAHNIVIYFVIAIIFPKPWSWAD
MLBr_00112|M.leprae_Br4923 ANEGLIKQLPTPLSVHVYRLVWRQTILFTHNIIIYLVVGILFPKPWSWAD
MAV_0236|M.avium_104 ANEGLIKQLPTPLSVHVYRLVWRQMILFAHNIVIYVVIAMIYPKPWSWAD
MSMEG_6369|M.smegmatis_MC2_155 ANEGLIKQLPTPLSVHVYRLVWRQIILFAHNIIIFVIIAIIYPKPWTWTD
TH_1670|M.thermoresistible__bu ANEGLIKQLPTPLSVHVYRLVWRQMILFAHNIIIFVIIAIIFPKPWSWTV
Mflv_1184|M.gilvum_PYR-GCK ANEGLIKQLPTPLSVHVYRLVWRQMLLFAHNIIIFVIIAIIYPKPWSWAD
Mvan_5620|M.vanbaalenii_PYR-1 ANEGLIKQLPTPLSVHVYRLVWRQMILFAHNIIIFVIIAIVYPKPWNWAD
MAB_0201c|M.abscessus_ATCC_199 ANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFLIVVAVYTPHWHFTD
:*********:*****:******* ::*:***:*:.:: ::. * ::
MMAR_5338|M.marinum_M LSVVPALGLIVLNCVWVSICFGILATRYRDIAPLLNSLVQLLFFMTPIIW
MUL_0090|M.ulcerans_Agy99 LSVVPALGLIVLNCVWVSLCFGIVATRYRDIAPLLNSLVQLLFFMTPIIW
Mb3812|M.bovis_AF2122/97 LSFLPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIW
Rv3783|M.tuberculosis_H37Rv LSFLPALALIFLNCVWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIW
MLBr_00112|M.leprae_Br4923 LSVFPALALVILNSVWVSLCFGILATRYRDIGPLLFSVVQLLFFITPIIW
MAV_0236|M.avium_104 LSVIPALALIVLNCIWVSLCFGILATRYRDIGPLLFSVVQLLFFMTPIIW
MSMEG_6369|M.smegmatis_MC2_155 LAVIPALGLIMLNMVWVALCFGILATRYRDIGPLLASVVQLLFFMTPIIW
TH_1670|M.thermoresistible__bu LTVIPALGLIVLNCVWVSLCFGILATRYRDIGPLLASIVQLLFFMTPIIW
Mflv_1184|M.gilvum_PYR-GCK LSVIPALLLLALNCVWVALCFGILATRYRDISPLLGSLVQLLFFMTPIIW
Mvan_5620|M.vanbaalenii_PYR-1 LAVIPALGLIAANCVWVALCFGILATRYRDIGPLLGSLVQLLFFMTPIIW
MAB_0201c|M.abscessus_ATCC_199 LSFIPALVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIW
*:..*** *: * :**:: **::*******.*** *:******:*****
MMAR_5338|M.marinum_M NDETLHRQGAGRWSRIVELNPLLHYLDIVRAPLLGAHQELRHWLVVIALT
MUL_0090|M.ulcerans_Agy99 NDETLHRQGAGRWARIVELNPLLHYLDIVRAPLLGAHQELRHWLVVIALT
Mb3812|M.bovis_AF2122/97 NDETLRRQGAGRWSSIVELNPLLHYLDIVRAPLLGAHQELRHWLVVLVLT
Rv3783|M.tuberculosis_H37Rv NDETLRRQGAGRWSSIVELNPLLHYLDIVRAPLLGAHQELRHWLVVLVLT
MLBr_00112|M.leprae_Br4923 NDDALRQQGEGRWSSIVELNPLLHYLDIVRAPLLGAHQELRHWAVVVTLT
MAV_0236|M.avium_104 NDDTLRQQGAGRWSSIVELNPLLHYLDIVRAPLLGSHQELRHWAVVLVLT
MSMEG_6369|M.smegmatis_MC2_155 NESTLQQQGAGSWAKIVEINPLLHYLDIVRAPLLGADQELRHWLVVLAFT
TH_1670|M.thermoresistible__bu NEATLDRQGAGTWAKLVELNPLLHYLDIVRAPLLGADQELHHWVVVISLT
Mflv_1184|M.gilvum_PYR-GCK NESTLQAQGAGGWAKIVELNPLLHYLDIVRAPLLGAEQELRHWVVVLVLT
Mvan_5620|M.vanbaalenii_PYR-1 NESTLQAQGAGGWAKVVELNPLLHYLDIVRAPLLGADQELRHWVVVLVLT
MAB_0201c|M.abscessus_ATCC_199 NENMLN-QRVGKLATVVQLNPFVHFLAIIRDPLLGLDQQLHHWIIALSIT
*: * * * : :*::**::*:* *:* **** .*:*:** :.: :*
MMAR_5338|M.marinum_M IVGWVLAAFAMRQYRARVPYWV
MUL_0090|M.ulcerans_Agy99 IVGWVLAAFAMRQYRARVPYWV
Mb3812|M.bovis_AF2122/97 VVGWMLAAFAMRQYRARVPYWV
Rv3783|M.tuberculosis_H37Rv VVGWMLAAFAMRQYRARVPYWV
MLBr_00112|M.leprae_Br4923 AAGWLLAAFAMRQYRARVPYWV
MAV_0236|M.avium_104 AVGWLLAAFAMRQYRARVPYWV
MSMEG_6369|M.smegmatis_MC2_155 VIGWTFAAFAMRQYRGRVPYWV
TH_1670|M.thermoresistible__bu VVGWGLAAIAMRKYRSRVPYWV
Mflv_1184|M.gilvum_PYR-GCK VVGWGFAALAMRQYRARVAYWV
Mvan_5620|M.vanbaalenii_PYR-1 VVGWTFAALAMRQYRARVPYWV
MAB_0201c|M.abscessus_ATCC_199 VVGWIVAIVVMRQYRARVPYWV
** .* ..**:**.**.***