For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
LRHRSRWFSIALACIFVIELVTAAAVTRHPDSAPQRSLASAEDPGPPTVVIGDRTVRLINLGGANSDLLL SRVGADIRGAVNAVVAFWGTDWAREISVVAAGSDEQFRTAAGGGTASQWADIAAVTVAERFDPGSRAVAG QRIVFAPGAVKMSATALRIVLTHELFHYAARVDTALDAPRWLTEGVADFVARPTTSRPAEAPPAALPSDD DLDIPGPARSRAYDRAWWFTRFVADTYGTTKLRDLYLAACGPGHSDLPRAALEVLGTDAAGLLAGWQQWM SVSS*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. marinum M | MMAR_3233 | - | - | 100% (285) | hypothetical protein MMAR_3233 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2212c | - | 8e-93 | 68.24% (255) | hypothetical protein Mb2212c |
M. gilvum PYR-GCK | Mflv_2960 | - | 6e-55 | 46.24% (279) | hypothetical protein Mflv_2960 |
M. tuberculosis H37Rv | Rv2189c | - | 8e-93 | 68.24% (255) | hypothetical protein Rv2189c |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_1975 | - | 2e-35 | 37.04% (243) | hypothetical protein MAB_1975 |
M. avium 104 | MAV_2305 | - | 5e-92 | 61.87% (278) | hypothetical protein MAV_2305 |
M. smegmatis MC2 155 | MSMEG_4255 | - | 1e-67 | 51.25% (281) | hypothetical protein MSMEG_4255 |
M. thermoresistible (build 8) | TH_1112 | - | 6e-64 | 55.51% (227) | CONSERVED HYPOTHETICAL PROTEIN |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_3551 | - | 4e-60 | 50.00% (264) | hypothetical protein Mvan_3551 |
CLUSTAL 2.0.9 multiple sequence alignment Mflv_2960|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3551|M.vanbaalenii_PYR-1 -------------------------------------------------- Mb2212c|M.bovis_AF2122/97 -------------------------------------------------- Rv2189c|M.tuberculosis_H37Rv -------------------------------------------------- MAV_2305|M.avium_104 -------------------------------------------------- MMAR_3233|M.marinum_M -------------------------------------------------- MSMEG_4255|M.smegmatis_MC2_155 -------------------------------------------------- TH_1112|M.thermoresistible__bu -------------------------------------------------- MAB_1975|M.abscessus_ATCC_1997 MVFVTLCGGCATRPAAPATRAGDARTSIQALLGSYATALRSNDVAALRAV Mflv_2960|M.gilvum_PYR-GCK ------------------------MRRSTTSVATSPSRLPRSVDRRRLGA Mvan_3551|M.vanbaalenii_PYR-1 ------------------------MRRSTTSVGTEQS---GAVARRRVGA Mb2212c|M.bovis_AF2122/97 -------------------------------------------------- Rv2189c|M.tuberculosis_H37Rv -------------------------------------------------- MAV_2305|M.avium_104 -------------------------------------------------- MMAR_3233|M.marinum_M -----------------------------------------MLRHRSRWF MSMEG_4255|M.smegmatis_MC2_155 -------------------------------------------------- TH_1112|M.thermoresistible__bu -------------------------------------------------- MAB_1975|M.abscessus_ATCC_1997 LVPDNPTFVAAQLRLQANLIHLKTDTFEYRTATDVPADPIATHQQWTLDA Mflv_2960|M.gilvum_PYR-GCK VFGAELICAVLLIAGPQVSAPVPAVAAPVPATHSPQPAPTGPSTRTVATP Mvan_3551|M.vanbaalenii_PYR-1 VLGAELVCALVLVGVPRIAPAATGPAAPMSYTQSASPVP-----HTVLTA Mb2212c|M.bovis_AF2122/97 ----------------------MRDGPAAPAQVVAPADG-FVALR---VA Rv2189c|M.tuberculosis_H37Rv ----------------------MRDGPAAPAQVVAPADG-FVALR---VA MAV_2305|M.avium_104 ------MFVVELVVAAAVPFDAERDGRTRPAQLVSPVRSQFSASSRSLVV MMAR_3233|M.marinum_M SIALACIFVIELVTAAAV----TRHPDSAPQRSLASAED---PGPPTVVI MSMEG_4255|M.smegmatis_MC2_155 MLLVELGLAVALLGTASNPPSAGQQPHPPVSATSAPADA--APVQTFTLP TH_1112|M.thermoresistible__bu -------------------------------------------------- MAB_1975|M.abscessus_ATCC_1997 ELFYAVSGVDTVGVQRPVTIGVRRDNDAWRLSDVSAIAVPWQFGPVIETR Mflv_2960|M.gilvum_PYR-GCK DGRTAQLADLGAPGGGALLDRIAAELPSATAAVTAFWGPQWPRDIPIVVA Mvan_3551|M.vanbaalenii_PYR-1 DGRTAQIIDLGGEGG-AALDRIAAELPAATEAVTAFWGPQWRRDITIVLA Mb2212c|M.bovis_AF2122/97 DDRTVRLLSLGGAATDRLLSRIAAGIDAAVDEVVAFWGTDWSHDIFVVAA Rv2189c|M.tuberculosis_H37Rv DDRTVRLLSLGGAATDRLLSRIAAGIDAAVDEVVAFWGTDWSHDIFVVAA MAV_2305|M.avium_104 GDRTVRLLGLGGPASDRLLARVAAGMGAAITAVEAFWGADWSREISVVAA MMAR_3233|M.marinum_M GDRTVRLINLGGANSDLLLSRVGADIRGAVNAVVAFWGTDWAREISVVAA MSMEG_4255|M.smegmatis_MC2_155 DGRTARLLTLGGPQTDVLLDRIRDELLGAADAVTAFWGPDWPREIDIAVA TH_1112|M.thermoresistible__bu -------VDLGGPHTAGLLNRIAAELDAAAAAVTAFWGDDWSREIVIAAA MAB_1975|M.abscessus_ATCC_1997 KNVGDKKVVVLGHPGAQLAPRIADEVGGAMRSLSEFWGPQGYPGVLFVAA : . *: : .* : *** : : .. * Mflv_2960|M.gilvum_PYR-GCK GTTGQFATLGGGG-----DGIAATTTAQ------------RITFAPGATA Mvan_3551|M.vanbaalenii_PYR-1 GSAEQFATLAGGG-----ADVAATTTPE------------RIMFSPAAAG Mb2212c|M.bovis_AF2122/97 GSDEQFHAAAGGGLASQWADIAAITVVDRVDPARRTVVGQRIVFAPGAAH Rv2189c|M.tuberculosis_H37Rv GSDEQFHAAAGGGLASQWADIAAITVVDRVDPARRTVVGQRIVFAPGAAH MAV_2305|M.avium_104 GTDEEFRAAAGGGPATQWADIAAVTVSDRVDPVRRIASGQRIVFAPGAAN MMAR_3233|M.marinum_M GSDEQFRTAAGGGTASQWADIAAVTVAERFDPGSRAVAGQRIVFAPGAVK MSMEG_4255|M.smegmatis_MC2_155 GTPEQFRVLGGVG-----ADIAAITTAD------------RIVFAPGAAT TH_1112|M.thermoresistible__bu ATDEQFTALAGGG-----PDIAAAAVDG------------RIVFAPGAAG MAB_1975|M.abscessus_ATCC_1997 GTEAEFAALVGGEHT---EGIAAAAVADRVDGG--IAVGQRVVVAPGAAA .: :* . * .:** :. *: .:*.*. Mflv_2960|M.gilvum_PYR-GCK MDDADLRTVVRHELFHYAARADTAADAPVWFTEGVADYVARPPAATP--- Mvan_3551|M.vanbaalenii_PYR-1 MNTADLRTVLRHELFHYAARADTAADAPVWLTEGVADFVGRPPAAEP--- Mb2212c|M.bovis_AF2122/97 MSPAALRIVLGHELFHYAARADTALDAPRWLAEGVADFVARPKTPPP--- Rv2189c|M.tuberculosis_H37Rv MSPAALRIVLGHELFHYAARADTALDAPRWLAEGVADFVARPKTPPP--- MAV_2305|M.avium_104 MSPASLRIVVAHELFHYASRADTVADAPRWLTEGVADFVGRPPAPVP--- MMAR_3233|M.marinum_M MSATALRIVLTHELFHYAARVDTALDAPRWLTEGVADFVARPTTSRP--- MSMEG_4255|M.smegmatis_MC2_155 MSPAALRIVLRHELFHYAARSVTAYDAPRWLTEGVADYVARPDAPRPG-- TH_1112|M.thermoresistible__bu MSADALRMVLRHELFHHAALPRTAGDAPRWLTEGVADFVARPGGRPEL-- MAB_1975|M.abscessus_ATCC_1997 LPADQFRVVLRHELFHAAARTVTGDHAPLWLVEGVADYNGRRGSGTPFRN : :* *: ***** *: * .** *:.*****: .* Mflv_2960|M.gilvum_PYR-GCK -----------PAAPRGFPSDAEMAAPGPARDEAYDRAWEFASYVAGVYG Mvan_3551|M.vanbaalenii_PYR-1 -----------PGAPASLPTDAELATPGPGRSDAYDRAWQFASHIAATYG Mb2212c|M.bovis_AF2122/97 --------ADAVSVALSLPSDTDLDTPGPQRSLAYDRAWWFARFVAAAYG Rv2189c|M.tuberculosis_H37Rv --------ADAVSVALSLPSDTDLDTPGPQRSLAYDRAWWFARFVAAAYG MAV_2305|M.avium_104 --------ADAL-LPLTLPSDTDLDVPGPQRSSAYDRAWWFARFVADSYG MMAR_3233|M.marinum_M --------AEAP--PAALPSDDDLDIPGPARSRAYDRAWWFTRFVADTYG MSMEG_4255|M.smegmatis_MC2_155 --------PQAAQMLARLPTDADLDTPGSTRSTAYDRAWWFTRYVADAYG TH_1112|M.thermoresistible__bu --------TDAEAQATRLPTDDDLDTPGPVRAHAYDRAWWFSSYVADRYG MAB_1975|M.abscessus_ATCC_1997 AAPTLANALASGQVPDHLPTDEELDNAGTRRTQAYEEAWSVAQYVAETFG :*:* :: .*. * **:.** .: .:* :* Mflv_2960|M.gilvum_PYR-GCK EDTLRALYVAACGHGHADFDGAVRTVLGVEPASLWADS---------- Mvan_3551|M.vanbaalenii_PYR-1 VEKLRALYVAACGHGHADVDTAVREVLGADLSTLSASPR--------- Mb2212c|M.bovis_AF2122/97 TAKLRELYLATCGVGHFDLATAAHDVLGIDAAGLLARWQRWLMG---- Rv2189c|M.tuberculosis_H37Rv TAKLRELYLATCGVGHFDLATAAHDVLGIDAAGLLARWQRWLMG---- MAV_2305|M.avium_104 PPKLRELYLATCGLRRADLATAAQEVLGTSPAGLLTRWHQWLTH---- MMAR_3233|M.marinum_M TTKLRDLYLAACGPGHSDLPRAALEVLGTDAAGLLAGWQQWMSVSS-- MSMEG_4255|M.smegmatis_MC2_155 PAKLRDLYVRACGFDHPDIATAVRTSLGAELDAVVDGWRRWMSG---- TH_1112|M.thermoresistible__bu PAALRDLYLRACGPGHRDVATAVRDALGAEPDVVLAGWRRWLTD---- MAB_1975|M.abscessus_ATCC_1997 EPRLVRLYRDGAGLAPQPRGAAIQRALGVDEATLVRQWQGWLGSRRLR * ** .* * ** . :