For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
ERETRLQLRSFRPALEHVDGAWWPRSRQLVDELPGLVASITERLGPIVMVGYHRNGWEQTPTVAEIAGHT VELLGFSSDDPASLILIGQDGHHLTLRVISPDASDQSAQRTLDEVRVDTDAGSPPAGRSLVERNVADVAD KLARHEGLDDDQRTAQIKRWCEEAAAQFVDAPVQTFVPILVEHIVRNRMIESRGATRSPLLERSPEPANS R*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. marinum M | MMAR_1227 | - | - | 100% (212) | hypothetical protein MMAR_1227 |
M. marinum M | MMAR_1382 | - | 2e-05 | 38.64% (44) | hypothetical protein MMAR_1382 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | - | - | - | - | - |
M. gilvum PYR-GCK | Mflv_5226 | - | 2e-11 | 34.11% (129) | hypothetical protein Mflv_5226 |
M. tuberculosis H37Rv | - | - | - | - | - |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | - | - | - | - | - |
M. avium 104 | MAV_2295 | - | 4e-05 | 56.67% (30) | hypothetical protein MAV_2295 |
M. smegmatis MC2 155 | MSMEG_3325 | - | 6e-18 | 41.44% (111) | hypothetical protein MSMEG_3325 |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_2527 | - | 3e-53 | 53.33% (195) | hypothetical protein Mvan_2527 |
CLUSTAL 2.0.9 multiple sequence alignment MMAR_1227|M.marinum_M ------------------MERETRLQLRSFRPALEHVDGAWWPRSRQLVD Mvan_2527|M.vanbaalenii_PYR-1 MANTPPPSSNSVGTTPVDVPMSGRLRLTRGRAPSEHIDGAWWPTSKRLDD Mflv_5226|M.gilvum_PYR-GCK MTQSGQDRGVGFGQPHNGPQSTPRLRLKPKAATTGFVDGAWWPHSTDLLA MSMEG_3325|M.smegmatis_MC2_155 -----------------MPARTPRLRLKPKAPQSGYVDGAWWPHSDDLRS MAV_2295|M.avium_104 ------------MGSAARRRRADPVRLSVGCELGRAIDGAWWPRADRITN ::* :****** : : MMAR_1227|M.marinum_M ELPGLVASITERLGPIVMVGYHRNGWEQT-PTVAEIAGHTVELLGFSSDD Mvan_2527|M.vanbaalenii_PYR-1 QLPDLVAALRDRIPSVALVGYRRDGWIAP-PQVDLGDGHIVQLLSFASDE Mflv_5226|M.gilvum_PYR-GCK ELPDLLAVLSVRLGDIARVAYNRGEWTSATPRKMLIDNRVVRLDGYDRQP MSMEG_3325|M.smegmatis_MC2_155 ELPDLLAVLSVRLGRIDRVLYHLNAWAEA-PRKLITGGRTVRLDGYRLQP MAV_2295|M.avium_104 ELPELVAVLTPLLGQIGAINVNWPPLQRP---------PDFNWPGWERKR :** *:* : : : : . . .. .: . MMAR_1227|M.marinum_M PASLILIGQDGHHLTLRVISPDASDQSAQRTLDEVR-VDTDAGSPPAGRS Mvan_2527|M.vanbaalenii_PYR-1 PPTIIVIGEDGHHLTLRVIDPDTDRHDAQVALDEIP-RRSDSQRLSR--- Mflv_5226|M.gilvum_PYR-GCK AHTIGVTGRGGWSNVLLVVPAATDSDDAHHVMMAAA-APGD--------- MSMEG_3325|M.smegmatis_MC2_155 INTIDVLGLDGDRLTLLVIPPHTNANDAHRTMMTAA-QPHN--------- MAV_2295|M.avium_104 QHVMTLIG-GDARINLLIIPYATYSALARMVLRCAAGLPVEP-------- : : * .. * :: : *: .: : MMAR_1227|M.marinum_M LVERNVADVADKLARHEGLDDDQRTAQIKRWCEEAAAQFVDAPVQTFVPI Mvan_2527|M.vanbaalenii_PYR-1 PAARSVAEVAKKLADHEGLNQVERNAELLRWCEDAATQFDEARIQTFVPI Mflv_5226|M.gilvum_PYR-GCK ---RSAVDLLLTT----------------------GATG----------- MSMEG_3325|M.smegmatis_MC2_155 ---AATVDGLLTISQRDRDTRNQASTAQERWESEGGTTASLRLAQLPG-- MAV_2295|M.avium_104 ---RDRGKPAFLTAG------------------SILRAAEQQRVDSAP-- . MMAR_1227|M.marinum_M LVEHIVRNRMIESRGATRSPLLERSPEPANSR Mvan_2527|M.vanbaalenii_PYR-1 LVEHIVNNRIHRERRAARDRTHDTEAPQTTS- Mflv_5226|M.gilvum_PYR-GCK -------------------------------- MSMEG_3325|M.smegmatis_MC2_155 -------------------------------- MAV_2295|M.avium_104 --------------------------------