For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MSDNTVRVDPVVMQGAAASLSGAAEHLSAQLGQLDDQVGQMLGGWQGASGSAYAAAWELWHRGAREVQLG LAMLARLVGQAGEAYASNEAGAAQAERAVRGG
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. avium 104 | MAV_4642 | - | - | 100% (102) | hypothetical protein MAV_4642 |
| M. avium 104 | MAV_4831 | - | 1e-07 | 31.03% (87) | hypothetical protein MAV_4831 |
| M. avium 104 | MAV_4643 | - | 6e-05 | 26.74% (86) | hypothetical protein MAV_4643 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3935c | esxF | 6e-19 | 72.73% (55) | hypothetical protein Mb3935c |
| M. gilvum PYR-GCK | - | - | - | - | - |
| M. tuberculosis H37Rv | Rv3905c | esxF | 9e-36 | 67.33% (101) | hypothetical protein Rv3905c |
| M. leprae Br4923 | MLBr_00049 | - | 2e-05 | 21.52% (79) | putative secreted protein |
| M. abscessus ATCC 19977 | MAB_3112 | - | 1e-05 | 27.91% (86) | hypothetical protein MAB_3112 |
| M. marinum M | MMAR_5466 | esxF | 9e-30 | 59.41% (101) | EsaT-6 like protein EsxF |
| M. smegmatis MC2 155 | MSMEG_1872 | - | 9e-12 | 35.71% (84) | hypothetical protein MSMEG_1872 |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | MUL_5055 | esxF | 5e-29 | 57.43% (101) | EsaT-6 like protein EsxF |
| M. vanbaalenii PYR-1 | Mvan_1120 | - | 2e-08 | 34.09% (88) | Fis family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3935c|M.bovis_AF2122/97 --MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLG-GWR
Rv3905c|M.tuberculosis_H37Rv --MGADDTLRVEPAVMQGFAASLDGAAEHLAVQLAELDAQVGQMLG-GWR
MMAR_5466|M.marinum_M --MDADGTLSANAAAMLGFAESLRGAAEHLQGELAELEGQVGDMLG-GWR
MUL_5055|M.ulcerans_Agy99 --MDADGTLGANAAAMLGFAESLHGAAEHLQGELAELEGQVGDMLG-GWR
MAV_4642|M.avium_104 ---MSDNTVRVDPVVMQGAAASLSGAAEHLSAQLGQLDDQVGQMLG-GWQ
MSMEG_1872|M.smegmatis_MC2_155 ----MGQSLEVVTSELRSASAALADAGQRLQDGLSAVDLSVDQLLGSGWK
Mvan_1120|M.vanbaalenii_PYR-1 -----MDHLKVDPDVAFNTSRSVSNDAVELHEQLDSLQHDWDNLSR-GWS
MAB_3112|M.abscessus_ATCC_1997 MTSAGNPPLQVVIDEVGALSKFAASLADQMRAGSSSLDRDVQSLFG-VWR
MLBr_00049|M.leprae_Br4923 ----MIQAWHFP--ALQGAVNELQGSQSRIDALLEQCQESLTKLQS-SWH
. .: : . .: *
Mb3935c|M.bovis_AF2122/97 GASGSAYGSA----------------------------------------
Rv3905c|M.tuberculosis_H37Rv GASGSAYGSAWELWHRGAGEVQLGLSMLAAAIAHAGAGYQHNETASAQVL
MMAR_5466|M.marinum_M GASGSAFASAWELWRRGAGEVQLGLSMLAESVGQAGAGYQANEAASARAL
MUL_5055|M.ulcerans_Agy99 GAAGSAFASAWELWRRGAGEVQFGLSMLAESVGQAGAGYQANEAASARAL
MAV_4642|M.avium_104 GASGSAYAAAWELWHRGAREVQLGLAMLARLVGQAGEAYASNEAGAAQAE
MSMEG_1872|M.smegmatis_MC2_155 GGAGSAYSEQWDKWHNGAGQVIRGLQAMSESLKASADSYSATDQQAAGAV
Mvan_1120|M.vanbaalenii_PYR-1 GAASSAYSPLWAEWLDGATTLVDTLEELSRKVAAAAAQYVDQDGSAAASI
MAB_3112|M.abscessus_ATCC_1997 GSAADAYRSGWDEMQDGATKVWNALTDIASTLGSNAAVFHAQETSTASSI
MLBr_00049|M.leprae_Br4923 GSGNESYSSVQQRFNQNTEGINHALGDLVQAINHSAETMQQTEAGVTSMF
*.. .::
Mb3935c|M.bovis_AF2122/97 --------------------------------------------------
Rv3905c|M.tuberculosis_H37Rv R---EVGGG-----------------------------------------
MMAR_5466|M.marinum_M R---ELGHG-----------------------------------------
MUL_5055|M.ulcerans_Agy99 R---ELGHGRSLPGGSRLAVRCGSADGGVWSSRGGHDC------------
MAV_4642|M.avium_104 R---AVRGG-----------------------------------------
MSMEG_1872|M.smegmatis_MC2_155 GSSFQPGGGSPAGSAGASSASPAAATSAQQASSAQMDGGTEDLAAMMGLG
Mvan_1120|M.vanbaalenii_PYR-1 DS-TAVDLGL----------------------------------------
MAB_3112|M.abscessus_ATCC_1997 T---STQAG-----------------------------------------
MLBr_00049|M.leprae_Br4923 T-------G-----------------------------------------
Mb3935c|M.bovis_AF2122/97 --------------------------------------------------
Rv3905c|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_5466|M.marinum_M --------------------------------------------------
MUL_5055|M.ulcerans_Agy99 --------------------------------------------------
MAV_4642|M.avium_104 --------------------------------------------------
MSMEG_1872|M.smegmatis_MC2_155 EPAAQLGGQLAEGAAQAAGQLTGGLTQAATAITQGVTGIVQAAQSESGAG
Mvan_1120|M.vanbaalenii_PYR-1 --------------------------------------------------
MAB_3112|M.abscessus_ATCC_1997 --------------------------------------------------
MLBr_00049|M.leprae_Br4923 --------------------------------------------------
Mb3935c|M.bovis_AF2122/97 --------------------------------------------------
Rv3905c|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_5466|M.marinum_M --------------------------------------------------
MUL_5055|M.ulcerans_Agy99 --------------------------------------------------
MAV_4642|M.avium_104 --------------------------------------------------
MSMEG_1872|M.smegmatis_MC2_155 ATPVETGSTTAADPLVPVDEATPDTEDEHTDERDETERQSDEQEAETLEA
Mvan_1120|M.vanbaalenii_PYR-1 --------------------------------------------------
MAB_3112|M.abscessus_ATCC_1997 --------------------------------------------------
MLBr_00049|M.leprae_Br4923 --------------------------------------------------
Mb3935c|M.bovis_AF2122/97 -------------------------------------------
Rv3905c|M.tuberculosis_H37Rv -------------------------------------------
MMAR_5466|M.marinum_M -------------------------------------------
MUL_5055|M.ulcerans_Agy99 -------------------------------------------
MAV_4642|M.avium_104 -------------------------------------------
MSMEG_1872|M.smegmatis_MC2_155 NGAGGGAGTDSSSVSAPGEMAPPSPSPPTTGNSMRFGRLNDAQ
Mvan_1120|M.vanbaalenii_PYR-1 -------------------------------------------
MAB_3112|M.abscessus_ATCC_1997 -------------------------------------------
MLBr_00049|M.leprae_Br4923 -------------------------------------------