For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_2737 | - | - | 100% (180) | isopentenyl-diphosphate delta-isomerase |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1774c | idi | 6e-43 | 50.61% (164) | isopentenyl-diphosphate delta-isomerase |
| M. gilvum PYR-GCK | Mflv_1842 | - | 2e-66 | 67.24% (174) | isopentenyl-diphosphate delta-isomerase |
| M. tuberculosis H37Rv | Rv1745c | idi | 2e-43 | 49.71% (171) | isopentenyl-diphosphate delta-isomerase |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_3218 | idi | 1e-24 | 41.83% (153) | isopentenyl-diphosphate delta-isomerase Idi |
| M. avium 104 | - | - | - | - | - |
| M. smegmatis MC2 155 | MSMEG_1446 | - | 3e-08 | 28.74% (174) | NTP pyrophosphohydrolase |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_1582 | - | 1e-65 | 64.20% (176) | isopentenyl-diphosphate delta-isomerase |
CLUSTAL 2.0.9 multiple sequence alignment
Mb1774c|M.bovis_AF2122/97 MTRSYRPAPPIERVVLLNDRGDATGVADKATVHTGDTPLHLAFSSYVSDL
Rv1745c|M.tuberculosis_H37Rv MTRSYRPAPPIERVVLLNDRGDATGVADKATVHTGDTPLHLAFSSYVFDL
TH_2737|M.thermoresistible__bu MT----VVDTEEFVVLLDEQGRQVGTAPKVSVHHQDTPLHLGFSCYLLDG
Mflv_1842|M.gilvum_PYR-GCK --------MSDEQVVLLDPDGSSVGTAAKSTVHHGDTPLHLGFSCYLFDS
Mvan_1582|M.vanbaalenii_PYR-1 MP----QTDTAELVVLLDDDGRTIGSAPKAQVHHASTPLHLAFSCYLFDD
MMAR_3218|M.marinum_M ------------MLELVDAGGVTQGVAEKIAAHEAPGLLHRAFSVFLFDE
MSMEG_1446|M.smegmatis_MC2_155 -----MDETREETVAVYDADGDVVGAAPRSRVYAEG-LWHASAGVLVRST
: : : * * * : .: * . . : .
Mb1774c|M.bovis_AF2122/97 HD-QLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELGLT
Rv1745c|M.tuberculosis_H37Rv HD-QLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELGLT
TH_2737|M.thermoresistible__bu DG-RVLLTRRALVKRTWPGVWTNSCCGHPGPGEPIEEAVRRRAHHELGLR
Mflv_1842|M.gilvum_PYR-GCK SG-RVLLTRRALGKKTWPGVWTNSFCGHPAPGEDVTDAVHRRAGRELGAA
Mvan_1582|M.vanbaalenii_PYR-1 AG-RVLLTRRAVHKRTFPGIWTNTCCGHPAPGEALQDAVTRRVREELGVG
MMAR_3218|M.marinum_M SG-RMALQRRAAGKYHWPGVLSNACCGHPFPGESPRVAAQRRVREELGLD
MSMEG_1446|M.smegmatis_MC2_155 DGNRIYVHRRSDTKAVFAGMHDCLAGGVLDPGEAPLQAATRELHEELGIT
. :: : **: * :..: * *** * *. ***
Mb1774c|M.bovis_AF2122/97 PDRVDLILPGFRYRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRW
Rv1745c|M.tuberculosis_H37Rv PDRVDLILPGFRYRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRW
TH_2737|M.thermoresistible__bu IEEPVCVLPDFRYHAVAADGTAENEICPVFVARADGPVRPAADEVMDWRW
Mflv_1842|M.gilvum_PYR-GCK LADVVCVLPDFRYWARAADGTVENEICPVFCALIDGTVSPAPDEVMDLEW
Mvan_1582|M.vanbaalenii_PYR-1 ITDLRCVLPDFRYRAVAADGVVENEVCPVFCGRAVGQVHPDRDEVADHVW
MMAR_3218|M.marinum_M VELVPAGTVTYR-HADAQTGLVEHEFNHLYVGRISGPPQPDPDEVSEVRM
MSMEG_1446|M.smegmatis_MC2_155 -GLIPTPLASASWDGEWAGRPMRCHLF-AFGVSYDGPIRHQAEEIVDGWW
. . .. : :*:
Mb1774c|M.bovis_AF2122/97 LSWEQFVRDVTAGVI--APVSPWCRSQLG---------------------
Rv1745c|M.tuberculosis_H37Rv LSWEQFVRDVTAGVI--APVSPWCRSQLGYLTKLGPCPAQWPVADDCRLP
TH_2737|M.thermoresistible__bu VRWQELR--AAAELP--WSISPWAAVQIPLLHDTGAVG------------
Mflv_1842|M.gilvum_PYR-GCK VEWSDLR--SAAALR--WAISPWAQSQVPLLEAAGLPGWARVAV------
Mvan_1582|M.vanbaalenii_PYR-1 VPWQHMR--AAAEFG--WAISPWAAEQVPLLDAAGIGHRD----------
MMAR_3218|M.marinum_M VTAAELAQLLEADSFSGWFLTVLGAARVAFAQFTQEIY------------
MSMEG_1446|M.smegmatis_MC2_155 WTDGELAQ-RLADPD--WLFVPDTRVLIPKLLRR----------------
.: * . :
Mb1774c|M.bovis_AF2122/97 ------
Rv1745c|M.tuberculosis_H37Rv KAAHGN
TH_2737|M.thermoresistible__bu ------
Mflv_1842|M.gilvum_PYR-GCK ------
Mvan_1582|M.vanbaalenii_PYR-1 ------
MMAR_3218|M.marinum_M ------
MSMEG_1446|M.smegmatis_MC2_155 ------