For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_2674 | - | - | 100% (227) | polar amino acid ABC transporter, inner membrane subunit |
| M. thermoresistible (build 8) | TH_0515 | - | 7e-21 | 31.75% (211) | amino acid ABC transporter, permease protein, 3-TM region, |
| M. thermoresistible (build 8) | TH_3737 | - | 3e-16 | 28.37% (208) | PUTATIVE glutamate transporter permease protein GluD |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_3970 | - | 1e-102 | 80.97% (226) | polar amino acid ABC transporter, inner membrane subunit |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_3052 | - | 5e-66 | 58.72% (218) | putative glutamate ABC transporter, permease |
| M. marinum M | MMAR_0061 | glnQ | 3e-17 | 28.44% (211) | ABC transporter permease protein GlnQ |
| M. avium 104 | MAV_0059 | - | 2e-19 | 30.29% (208) | amino acid ABC transporter, permease protein, |
| M. smegmatis MC2 155 | MSMEG_2726 | - | 1e-97 | 78.32% (226) | glutamate permease |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_2426 | - | 2e-99 | 80.36% (224) | polar amino acid ABC transporter, inner membrane subunit |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_3970|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_2426|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_2726|M.smegmatis_MC2_155 --------------------------------------------------
TH_2674|M.thermoresistible__bu --------------------------------------------------
MAB_3052|M.abscessus_ATCC_1997 --------------------------------------------------
MMAR_0061|M.marinum_M ----------MLAVSATILIVLG--LALAAPALADHNQCAPAGVDSAMVL
MAV_0059|M.avium_104 MGRRGTRRGKLLALTATVLMVCGSSALLAPPAAADRNQCAPAGPKSAAVL
Mflv_3970|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_2426|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_2726|M.smegmatis_MC2_155 --------------------------------------------------
TH_2674|M.thermoresistible__bu --------------------------------------------------
MAB_3052|M.abscessus_ATCC_1997 --------------------------------------------------
MMAR_0061|M.marinum_M PADLSSATTAGSDEDVQTTAGVVPLSSVNIGDLGLGTPGVLTAGTLSDAP
MAV_0059|M.avium_104 PENLTRGGSMS-QPDEHTTPTVEPLSSVRIDTLGLGTPGVLTVGTLSGAP
Mflv_3970|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_2426|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_2726|M.smegmatis_MC2_155 --------------------------------------------------
TH_2674|M.thermoresistible__bu --------------------------------------------------
MAB_3052|M.abscessus_ATCC_1997 --------------------------------------------------
MMAR_0061|M.marinum_M PNTCINSTGQFTGFDNELLRAIAAKLGLQVRFVGTDFSGLLAQVAARRFD
MAV_0059|M.avium_104 PNVCITPTGQYSGFDNQLLRAIAGKLGLQVRFVGTDFAGLLAQVASRRFD
Mflv_3970|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_2426|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_2726|M.smegmatis_MC2_155 --------------------------------------------------
TH_2674|M.thermoresistible__bu --------------------------------------------------
MAB_3052|M.abscessus_ATCC_1997 --------------------------------------------------
MMAR_0061|M.marinum_M VGSASVKLTEARRRTVAFTNGYDFGYYSLVVPPGSAITKFSDLAPGQRIG
MAV_0059|M.avium_104 VGSSSIKATDERRQTVAFTNGYDFGYYALVVPPGSAIKEFTDLAAGQRIG
Mflv_3970|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_2426|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_2726|M.smegmatis_MC2_155 --------------------------------------------------
TH_2674|M.thermoresistible__bu --------------------------------------------------
MAB_3052|M.abscessus_ATCC_1997 --------------------------------------------------
MMAR_0061|M.marinum_M VVQGTVEESYVVNSLHLQPVKYPDFATVYGNLKTHQIDAWVAPGNQAEAA
MAV_0059|M.avium_104 VVQGTVEESYVVDTLHLQPVKYPDFATVYASLKTRQIDAWVAPAGQAATT
Mflv_3970|M.gilvum_PYR-GCK ------------------------------------------------ME
Mvan_2426|M.vanbaalenii_PYR-1 ------------------------------------------------ME
MSMEG_2726|M.smegmatis_MC2_155 ------------------------------------------------ME
TH_2674|M.thermoresistible__bu ------------------------------------------------VQ
MAB_3052|M.abscessus_ATCC_1997 -----------------------------------------------MNA
MMAR_0061|M.marinum_M IRPGDPAVLVANTFGAGDFVAYVVARDNRPLLDALNSGLDAVIADGTWSQ
MAV_0059|M.avium_104 IQPGDPAVVVANTISPGNFVAYAVAKDNKPLVDALNSGLDAVIADGTWSN
Mflv_3970|M.gilvum_PYR-GCK VFTEYREEIFAAFWT-----------------------------------
Mvan_2426|M.vanbaalenii_PYR-1 VFTEYRAEILAAFWT-----------------------------------
MSMEG_2726|M.smegmatis_MC2_155 IFDEYRDEIFAAFWT-----------------------------------
TH_2674|M.thermoresistible__bu VFSEYSGQIFQAFWT-----------------------------------
MAB_3052|M.abscessus_ATCC_1997 LWASMGPQLWPAFWT-----------------------------------
MMAR_0061|M.marinum_M LYSKWVPRTLPPGWKPGSRAVAAPTLPDFAAIAAAHRHKPVGPAAPKSAL
MAV_0059|M.avium_104 LYSQWVPRTLPPGWKPGSQAVAPPKLPDFAAIAASQHHKAVGPAAPKSTL
:: . . . *.
Mflv_3970|M.gilvum_PYR-GCK ---------------------------TVQLTVLSAIGALVLGTVLAAMR
Mvan_2426|M.vanbaalenii_PYR-1 ---------------------------TIQLTVLAAIGALVLGTVLAAMR
MSMEG_2726|M.smegmatis_MC2_155 ---------------------------TIQLTVYSAVGALILGTVLAAMR
TH_2674|M.thermoresistible__bu ---------------------------TIQLTVLSAIGALVLGTVLAAMR
MAB_3052|M.abscessus_ATCC_1997 ---------------------------TLRLTFFSAVGALVWGTLLAEFR
MMAR_0061|M.marinum_M TQLRDSFFDWDMYRQAIPTLFKTGLPNTLILTLSASIIGLALGMALAIAG
MAV_0059|M.avium_104 AQLRDSFFDWDMYRQAIPTLLRTGLPNTLILTFSASVIGLVLGMVLAVAG
*: **. ::: .* * **
Mflv_3970|M.gilvum_PYR-GCK LAPVPMLNWIGTAYVNLVRNTPLTLIILFCSFGLAQTLGLTLADRQSPTF
Mvan_2426|M.vanbaalenii_PYR-1 LAPVPMLNWIGTAYVNIVRNTPLTLIILFSSFGLSQTLGLTLADRQSATF
MSMEG_2726|M.smegmatis_MC2_155 LAPVPVMNWMGTAYVNVVRNTPLTLIILFCSFGVGQTLRITLVDPNSPTS
TH_2674|M.thermoresistible__bu LAPVPVLNWLGAGYVNVVRNTPLTLIILFCAFGLGQTLSITLADRGSPTF
MAB_3052|M.abscessus_ATCC_1997 VSPVPVMRIFGTWYVNVVRNTPLTLIILFCSVGLYQNLGIALAPENS-NF
MMAR_0061|M.marinum_M ISHQRWLRWPARVYTDIFRGLPEVVIILIIGLGVGPIVGG---------L
MAV_0059|M.avium_104 ISHARWLRWPARVYTDVFRGLPEVVIILLIGLGIGPIVGG---------L
:: :. . *.::.*. * .:***: ..*: :
Mflv_3970|M.gilvum_PYR-GCK IADSGFRLAVLGLTVYTASFVCETVRAGVNTIPLGQAEAARSLGLTFGQN
Mvan_2426|M.vanbaalenii_PYR-1 IADSGFRLAVLGLTVYTASFVCETVRSGVNTVPLGQAEAARSLGFTFGQN
MSMEG_2726|M.smegmatis_MC2_155 IADSNFRLAVLGLTVYTASFVCETIRSGVNTVPLGQAEAARSLGFTFGQN
TH_2674|M.thermoresistible__bu LQDSNFRLAVLGFTVYTAAFVCETIRAGVNTVPVGQVEAARALGFTFGQN
MAB_3052|M.abscessus_ATCC_1997 IKNNNFWLSVLGFSLYTATFVCETLRSGFNTVPLGQAEAARSLGLPFWRV
MMAR_0061|M.marinum_M TNNNPYPLGIAALGLMAGAYVGEILRSGIQSVDPGQLEASRALGFSYSAA
MAV_0059|M.avium_104 TNNNPYPLGIAALGMMAAAYIGEILRSGIQSVDPGQLEASRALGFSYATA
:. : *.: .: : :.::: * :*:*.::: ** **:*:**:.:
Mflv_3970|M.gilvum_PYR-GCK LRIVLLPQAFRAVVIPLGSVLIALTKNTTIASAIGVAEAALLMKEMIENT
Mvan_2426|M.vanbaalenii_PYR-1 LRIVLLPQAFRAVLIPLGSVLIALTKNTTIASAIGVAEAALLMKEMIENT
MSMEG_2726|M.smegmatis_MC2_155 LRYILLPQAFRAVIIPLGSVLIALIKNTTIASAIGVAEAALLMKAMIENT
TH_2674|M.thermoresistible__bu LRIIVLPQAFRAVIIPLGTVLIALTKNTTIASAIGVAEAALLMKEMIENT
MAB_3052|M.abscessus_ATCC_1997 LTLIVLPQAMRSVLAPMGSVLIALVKNTSIASAIGVAEAALLMRSEIELF
MMAR_0061|M.marinum_M MRLVVVPQGVRRVLPALVNQFIALLKASALVYFLGLIAQQRELFQVGRDL
MAV_0059|M.avium_104 MRLVVVPQGVRRVLPALVNQFIALLKASALVYFLGLVADQRELFQVGRDL
: :::**..* *: .: . :*** * :::. :*: : .
Mflv_3970|M.gilvum_PYR-GCK A-AVLVVGGIFALG--FVILTLPLGLVFGWLGKRLAVAR-----------
Mvan_2426|M.vanbaalenii_PYR-1 A-AVLVVGGIFALG--FVILTLPLGLLFGWLGKRMAVAH-----------
MSMEG_2726|M.smegmatis_MC2_155 A-ALLTVGTIMALG--FILLTLPVGLFFGWLGKRLAVAR-----------
TH_2674|M.thermoresistible__bu S-AVLIVGAIFAVG--FLILTLPLGLLSGRLSNRLAVRR-----------
MAB_3052|M.abscessus_ATCC_1997 ADQIVWIFLIIAAG--YMVITLTIGLSFGYFAKRLAVKR-----------
MMAR_0061|M.marinum_M NAQTGNLSPLVAAGIFYLMLTVPLTHLVNYIDARLRRGRRRLDPEDPPGV
MAV_0059|M.avium_104 NAETGNLSPLVAAGACYLILTVPLTHLVNMIDARLRRGRAAVDPEEPAEM
: :.* * ::::*:.: . : *: :
Mflv_3970|M.gilvum_PYR-GCK ----------
Mvan_2426|M.vanbaalenii_PYR-1 ----------
MSMEG_2726|M.smegmatis_MC2_155 ----------
TH_2674|M.thermoresistible__bu ----------
MAB_3052|M.abscessus_ATCC_1997 ----------
MMAR_0061|M.marinum_M VSSTIGEEMT
MAV_0059|M.avium_104 LT--FGQEIT