For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_0822 | - | 100% (105) | PROBABLE DNA-DIRECTED RNA POLYMERASE (OMEGA CHAIN) RPOZ (TRANSCRIPTASE OMEGA CHAIN) (RNA POLYMERASE OMEGA SUBUNIT) |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1425 | rpoZ | 2e-42 | 77.27% (110) | DNA-directed RNA polymerase subunit omega |
| M. gilvum PYR-GCK | Mflv_3739 | - | 6e-45 | 82.35% (102) | DNA-directed RNA polymerase subunit omega |
| M. tuberculosis H37Rv | Rv1390 | rpoZ | 2e-42 | 77.27% (110) | DNA-directed RNA polymerase subunit omega |
| M. leprae Br4923 | MLBr_00542 | - | 3e-42 | 74.55% (110) | DNA-directed RNA polymerase subunit omega |
| M. abscessus ATCC 19977 | MAB_2822c | - | 9e-41 | 86.67% (90) | DNA-directed RNA polymerase omega subunit |
| M. marinum M | MMAR_2203 | rpoZ | 9e-43 | 76.36% (110) | DNA-directed RNA polymerase (omega chain) RpoZ |
| M. avium 104 | MAV_3384 | - | 4e-41 | 77.78% (108) | DNA-directed RNA polymerase subunit omega |
| M. smegmatis MC2 155 | MSMEG_3053 | rpoZ | 1e-45 | 83.18% (107) | DNA-directed RNA polymerase subunit omega |
| M. ulcerans Agy99 | MUL_1789 | rpoZ | 9e-43 | 76.36% (110) | DNA-directed RNA polymerase subunit omega |
| M. vanbaalenii PYR-1 | Mvan_2668 | - | 7e-46 | 83.65% (104) | DNA-directed RNA polymerase subunit omega |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_2203|M.marinum_M MSI---PQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRV
MUL_1789|M.ulcerans_Agy99 MSI---PQSDAPLAAVSAVDQFDPSSGGIGAYDTPLGITNPPIDELLDRV
MLBr_00542|M.leprae_Br4923 MSI---PQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRV
Mb1425|M.bovis_AF2122/97 MSI---SQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRV
Rv1390|M.tuberculosis_H37Rv MSI---SQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRV
MAV_3384|M.avium_104 MTN---SQSDAALAAVP--DRFDPSAGGPGAYDTPLGITNPPIDELLDRV
Mflv_3739|M.gilvum_PYR-GCK MSTPLTPTADSRLAAAD----IDPSAAS--AYDTPLGITNPPIDELLDRA
Mvan_2668|M.vanbaalenii_PYR-1 MST---PHADTRLAAVD----IDPSAAS--AYDTPLGITNPPIDELLDRA
MSMEG_3053|M.smegmatis_MC2_155 MST---PHADAQLNAADD-LGIDSSAAS--AYDTPLGITNPPIDELLSRA
TH_0822|M.thermoresistible__bu VST---PSADARSNAVAG----DSSATA--VYDTPLGLTNPPIDELLERV
MAB_2822c|M.abscessus_ATCC_199 MST---SQTDVIVEPGT------DSYDA--ALDTPLGITNPPIDELLARA
:: . :: . * . *****:********* *.
MMAR_2203|M.marinum_M SSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMR
MUL_1789|M.ulcerans_Agy99 SSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMR
MLBr_00542|M.leprae_Br4923 SSKYALVIYAAKRARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMR
Mb1425|M.bovis_AF2122/97 SSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALR
Rv1390|M.tuberculosis_H37Rv SSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALR
MAV_3384|M.avium_104 SSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALR
Mflv_3739|M.gilvum_PYR-GCK SSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMR
Mvan_2668|M.vanbaalenii_PYR-1 SSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMR
MSMEG_3053|M.smegmatis_MC2_155 SSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALR
TH_0822|M.thermoresistible__bu SSKYALVIFAAKRARQINDYYNQLGDGILEYVGPLVEPGLHEKPLSIALR
MAB_2822c|M.abscessus_ATCC_199 SSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALR
********:**********:*****:**************:*******:*
MMAR_2203|M.marinum_M EIHADLLEHTEGE
MUL_1789|M.ulcerans_Agy99 EIHADLLEHTEGE
MLBr_00542|M.leprae_Br4923 EIHADLLEHTEGE
Mb1425|M.bovis_AF2122/97 EIHADLLEHTEGE
Rv1390|M.tuberculosis_H37Rv EIHADLLEHTEGE
MAV_3384|M.avium_104 EIHGDLLEHTEGE
Mflv_3739|M.gilvum_PYR-GCK EIHGDLLEHTEGE
Mvan_2668|M.vanbaalenii_PYR-1 EIHGDLLEHTEGE
MSMEG_3053|M.smegmatis_MC2_155 EIHGDLLEHTEGE
TH_0822|M.thermoresistible__bu EIHADLLEHTEGE
MAB_2822c|M.abscessus_ATCC_199 EIHGDLLEHTEGE
***.*********