For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
RLTILLFLGAVLAGCASVPSTSAPQAIGTVERPVPSNLPKPSPGMDPDVLLREFLKATADPANRHLAARQ FLTESASNAWDDAGSALLIDHVVFVETRSAEKVSVTMRADILGSLSDVGVFETAEGQLPDPGPIELVKTS DGWRIDRLPNGVFLDWQQFQETYKRNTLYFADPTGKTVVPDPRYVAVSDRDQLATELVSKLLAGPRPEMA RTVRNLLAPPLRLRGPVTRADGGKSGIGRGYGGARVDMEKLSTTDPHSRQLLAAQIIWTLARADIRGPYV INADGAPLEDRFAEGWTTSDVAATDPGVADGAAAGLHALVNGSLVAMDAQRVTPVPGAFGRMPEQTAAAV SRSGRQVASVVTLGRGAPDEAASLWVGDLGGEAVQSADGHSLSRPSWSLDDAVWVVVDTNVVLRAIQDPA SGQPARIPVDSTAVASRFPGAINDLQLSRDGTRAAMVIGGQVILAGVEQTQAGQFALTYPRRLGFGLGSS VVSLSWRTGDDIVVTRTDAAHPVSYVNLDGVNSDAPSRGLQTPLTAIAANPSTVYVAGPQGVLMYSASVE SRPGWADVPGLMVPGAAPVLPG*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. tuberculosis H37Rv | Rv3244c | lpqB | - | 100% (583) | PROBABLE CONSERVED LIPOPROTEIN LPQB |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3272c | lpqB | 0.0 | 99.66% (583) | lipoprotein LpqB |
| M. gilvum PYR-GCK | Mflv_4710 | - | 0.0 | 77.06% (571) | lipoprotein LpqB |
| M. leprae Br4923 | MLBr_00775 | lpqB | 0.0 | 87.91% (579) | lipoprotein LpqB |
| M. abscessus ATCC 19977 | MAB_3589c | - | 0.0 | 57.34% (579) | lipoprotein LpqB |
| M. marinum M | MMAR_1301 | lpqB | 0.0 | 88.08% (579) | lipoprotein LpqB |
| M. avium 104 | - | - | - | - | - |
| M. smegmatis MC2 155 | MSMEG_1876 | - | 0.0 | 77.02% (583) | lipoprotein LpqB |
| M. thermoresistible (build 8) | TH_0462 | lpqB | 0.0 | 73.88% (582) | PROBABLE CONSERVED LIPOPROTEIN LPQB |
| M. ulcerans Agy99 | MUL_2580 | lpqB | 0.0 | 88.08% (579) | lipoprotein LpqB |
| M. vanbaalenii PYR-1 | Mvan_1754 | - | 0.0 | 77.68% (569) | lipoprotein LpqB |
CLUSTAL 2.0.9 multiple sequence alignment
Rv3244c|M.tuberculosis_H37Rv --------MRLTILLFLGAVLAGCASVPSTSAPQAIGTVERPVPSNLPKP
Mb3272c|M.bovis_AF2122/97 --------MRLTILLFLGAVLAGCASVPSTSAPQAIGTVERPVPSNLPKP
MMAR_1301|M.marinum_M MREFPTMVRSVFALVFAAVLLGGCASVPSSSAPQAIGTVERPAPSNLPKP
MUL_2580|M.ulcerans_Agy99 ------MVRSVFALVFAAVLLGGCASVPSSSAPQAIGTVERPAPSNLPKP
MLBr_00775|M.leprae_Br4923 ---MMRGVLVIMRLLCLGMLFTGCAGVPNSSAPQAIGTVERPVPSNLPKP
MSMEG_1876|M.smegmatis_MC2_155 -----MKRLLTVLVVGLVALVSGCAGIPSSSSPQAIGTVERPAPPSLPKP
Mflv_4710|M.gilvum_PYR-GCK ----MTRTRFAALVTALVLAVAGCAGVPTSSSPQAIGTVDRPAPPSLPTP
Mvan_1754|M.vanbaalenii_PYR-1 ----MRRIAALWLCALMVFAVG-CAGVPSSSSPQAIGTVDRPAPPSLPKP
TH_0462|M.thermoresistible__bu ----VTRRFLILIAVTMIGVLTGCAGVPSSSSPQAVGTVERPAPPTLPKP
MAB_3589c|M.abscessus_ATCC_199 ----MTCRKVAAVLAAVALIVPSCAGVPSSSSPQAIGTVQRPAPPGMPAP
. **.:*.:*:***:***:**.*. :* *
Rv3244c|M.tuberculosis_H37Rv SPGMDPDVLLREFLKATADPANRHLAARQFLTESASNAWDDAGSALLIDH
Mb3272c|M.bovis_AF2122/97 SPGMDPDVLLREFLKATADPANRHLAARQFLTESASNAWDDAGSALLIDH
MMAR_1301|M.marinum_M IPGMDPDVLLREFLKATADPANRHLAARQFLTQSASNAWDDAGSALLIDH
MUL_2580|M.ulcerans_Agy99 IPGMDPDVLLREFLKATADPANRHLAARQFLTQSASNAWDDAGSALLIDH
MLBr_00775|M.leprae_Br4923 TPGMDPDVLLREFFKATADPANRHLAARQFLTQSASNAWDDAGRALLIDH
MSMEG_1876|M.smegmatis_MC2_155 TPDMDPDVLLREFLKATADPANRHLAARQFLTESASSAWDDAGSALLIDR
Mflv_4710|M.gilvum_PYR-GCK TPGMDPDVLLREFLKATADPSNRHLAARQFLTESASSTWDDAGSALLIDN
Mvan_1754|M.vanbaalenii_PYR-1 TPAMDPDVLLREFLKATADPANRHLAARQFLTESASSTWDDAGSALLIDN
TH_0462|M.thermoresistible__bu TPDMVPDVLLREFLKATADPANRHLAARQFLTESASQGWDDAGGALLVDR
MAB_3589c|M.abscessus_ATCC_199 TPGMEPETVLREFLKATADPSNRHRAARQFLTESGSRTWDDAGAAVLIES
* * *:.:****:******:*** *******:*.* ***** *:*::
Rv3244c|M.tuberculosis_H37Rv VVFVETRSAEKVSVTMRADILGSLSDVGVFETAEGQLPDPGPIELVKTSD
Mb3272c|M.bovis_AF2122/97 VVFVETRSAEKVSVTMRADILGSLSDVGVFETAEGQLPDPGPIELVKTSG
MMAR_1301|M.marinum_M VVFVETRGAERVSATMRADILGSLSDMGVFETAEGELPDPGPIELVKTSG
MUL_2580|M.ulcerans_Agy99 VVFVETRGAERVSATMRADILGSLSDMGVFETAEGELPDPGPIELVKTSG
MLBr_00775|M.leprae_Br4923 VVFVETRGAERVSATMRADILGSLSDMGVFETAEGVLPDPGPVELIKTSG
MSMEG_1876|M.smegmatis_MC2_155 VVFVETRSTDRVSVSMRADILGSLSDLGVFETGEGALPDPGPIELVKTSG
Mflv_4710|M.gilvum_PYR-GCK VVFVETRTPERVSVTMRADILGSLSDMGVFETGAGALPDPGPIELVKTAG
Mvan_1754|M.vanbaalenii_PYR-1 VVFVETRAPERVSVTMRADILGSLSDMGVFETGAGALPDPGPIELVKTPD
TH_0462|M.thermoresistible__bu VGFVENSGPQRVSVSMRADILGSLSDMGVFETAEGELPDPGPIELVRTPD
MAB_3589c|M.abscessus_ATCC_199 PVFADQRGVDRWTINVRANKLGTLSDIGVFETAQGDVQDP-QFTLVKANG
*.: :: : .:**: **:***:*****. * : ** . *::: .
Rv3244c|M.tuberculosis_H37Rv GWRIDRLPNGVFLDWQQFQETYKRNTLYFADPTGKTVVPDPRYVAVSDRD
Mb3272c|M.bovis_AF2122/97 GWRIDRLPNGVFLDWQQFQETYKRNTLYFADPTGKTVVPDPRYVAVSDRD
MMAR_1301|M.marinum_M GWRIDRLPNGVFLDWQQFQSTYKRNTLYFADPTGKTVVPDPRYVAVSDHD
MUL_2580|M.ulcerans_Agy99 GWRIDRLPNGVFLDWQQFQSTYKRNTLYFADPTGKTVVPDPRYVAVSDHD
MLBr_00775|M.leprae_Br4923 GWRIDRLPNGVFLDWQQFQATYKRNTLYFADPTGKTVVPDPRYVAVLGHD
MSMEG_1876|M.smegmatis_MC2_155 GWRIDRLPNGVFLDWQQFQATYKRYTLYFVDPTGTTVVPDPRYVAVSDPD
Mflv_4710|M.gilvum_PYR-GCK GWRIDRLPNGVFLDWQQFQATYKRHTLYFADPTGKTVVPDPRYVAVSEPD
Mvan_1754|M.vanbaalenii_PYR-1 GWRIDRLPNGVFLDWQQFQATYKRHTLYFADPTGKTVVPDPRYVAVSEPD
TH_0462|M.thermoresistible__bu GWRIDKLPNGVFLDWQQFQETYRRHTLYFADNTGSTVVPDPRYVAVSDPD
MAB_3589c|M.abscessus_ATCC_199 EWRIDSLPNGVLLDWGQFQSTYRRYTVYFADPAGRTVVPDPRYVAVNDPD
**** *****:*** *** **:* *:**.* :* *********** *
Rv3244c|M.tuberculosis_H37Rv QLATELVSKLLAGPRPEMARTVRNLLAPPLRLRGPVTRADGGKSGIGRGY
Mb3272c|M.bovis_AF2122/97 QLATELVSKLLAGPRPEMARTVRNLLAPPLRLRGPVTRADGGKSGIGRGY
MMAR_1301|M.marinum_M QLATELVSKLLAGPRPEMAHSVRNLLAPPLRLRGPVTRADGGKSGIGKGY
MUL_2580|M.ulcerans_Agy99 QLATELVSKLLAGPRPEMAHSVRNLLAPPLRLRGPVTRADGGKSGIGKGY
MLBr_00775|M.leprae_Br4923 QLATELVSKLLAGPRPEMAHAVRNLLAPPLRLRGPVTRADGSKSGIGRGY
MSMEG_1876|M.smegmatis_MC2_155 QLATELVSKLIAGPRPEMERSVRNLLDPPLKLRGPVTRADGGKTGVGRGY
Mflv_4710|M.gilvum_PYR-GCK QLATELVSKLITGPRPEMDKTVRNLLGSPLRLRGPVTRADGGKTGIGRGY
Mvan_1754|M.vanbaalenii_PYR-1 QLATELVSKLVAGPRPEMDKTVRNLLGSPLRLRGPVTRADGGKTGVGRGY
TH_0462|M.thermoresistible__bu QLATELVSKLIVGPRPEMAGTVRNLLEPPLRLRGPVTRADGGRTGVGRGY
MAB_3589c|M.abscessus_ATCC_199 LLATELVYKLLSGPRPELAGAVRNHLNG-LRLRGPVTRVDGSRVDVGRGY
****** **: *****: :*** * *:*******.**.: .:*:**
Rv3244c|M.tuberculosis_H37Rv GGARVDMEKLSTTDPHSRQLLAAQIIWTLARADIRGPYVINADGAPLEDR
Mb3272c|M.bovis_AF2122/97 GGARVDMEKLSTTDPHSRQLLAAQIIWTLARADIRGPYVINADGAPLEDR
MMAR_1301|M.marinum_M GGARIDLEKLSTTDPHSRQLLAAQIIWTLARADIRGPYVINADGAPLDDR
MUL_2580|M.ulcerans_Agy99 GGARIDLEKLSTTDSHSRQLLAAQIIWTLARADIRGPYVINADGAPLDDR
MLBr_00775|M.leprae_Br4923 GGARIDLEKLSTTDPHSRQLLAAQIIWTLARADIRGPYVINADGAPLDDR
MSMEG_1876|M.smegmatis_MC2_155 GGARIDLENLSASDPHSRQLLAAQLIWTLSRAGVAGPYVINVDGAPLDDR
Mflv_4710|M.gilvum_PYR-GCK GGARIDLENLSTTDPHSRQLLAAQLIWTLSRSGINGPYVINADGAALDDR
Mvan_1754|M.vanbaalenii_PYR-1 GGARVDLENLSTTDPHSRQLLAAQLIWTLSRSGINGPYVLNADGAALDDR
TH_0462|M.thermoresistible__bu GGARIDLENLSTTDPQSRQLLAAQIIWTLARAGINGPYVINADGAALDDR
MAB_3589c|M.abscessus_ATCC_199 GGVRVELEGDLTPDQRTRQFLAAQVIWTLSRAGIAGPYVLQVNGAPLDEQ
**.*:::* :.* ::**:****:****:*:.: ****::.:**.*:::
Rv3244c|M.tuberculosis_H37Rv FAEGWTTSDVAATDPGVADGAAAGLHALVNGSLVAMDAQRVTPVPGAFGR
Mb3272c|M.bovis_AF2122/97 FAEGWTTSDVAATDPGVADGAAAGLHALVNGSLVAMDAQRVTPVPGAFGR
MMAR_1301|M.marinum_M FAEGWTTSDVAATDPGVADGAGAGLHALVGGSLVALDGQRITTVGGAFGR
MUL_2580|M.ulcerans_Agy99 FAEGWTTSDVAATDPGVADGAGAGLHALVGGSLVALDGQRITTVEGAFGR
MLBr_00775|M.leprae_Br4923 FADGWTTSDVAATDPGVADGAGAGLHALVGGALVSLIGQNTTTVLGAFGR
MSMEG_1876|M.smegmatis_MC2_155 FADGWETSDVAATDPGAAPGAAAGLHALVNGSLVSLDGQRAPRVPGAFGQ
Mflv_4710|M.gilvum_PYR-GCK FAQGWDTGAVAATDPGAADGAAAGLHALVGGTLVRLDGDRAPRVAGPFGQ
Mvan_1754|M.vanbaalenii_PYR-1 FAEGWDTADVAATDPGAADGAAAGLHALVGGSLVRLDGQRAPRVSGQFGQ
TH_0462|M.thermoresistible__bu FAEGWKTSDVAATDPGADDGAAAGLHALVDGRLVSVDGQRAAPVPGAFGH
MAB_3589c|M.abscessus_ATCC_199 FAQGWSTQNVASTDPGASEGAGVGLYGLLNGSMVTVDRDAAVPVRGSFGQ
**:** * **:****. **..**:.*:.* :* : : * * **:
Rv3244c|M.tuberculosis_H37Rv MPEQTAAAVSRSGRQVASVVTLGRGAPDEAASLWVGDLGGEAVQSADGHS
Mb3272c|M.bovis_AF2122/97 MPEQTAAAVSRSGRQVASVVTLGRGAPDEAASLWVGDLGGEAVQSADGHS
MMAR_1301|M.marinum_M MGDQTGAALSRTGRLAASVVTLRRGAPDVAASLWIGELGAEAVQAADGHN
MUL_2580|M.ulcerans_Agy99 MGDQTGAALSRTGRLVASVVTLRRGAPDVAASLWIGELGAEAVQAADGHN
MLBr_00775|M.leprae_Br4923 MGYQTGAALSRSGRQVASVVTLRRGAPDMAASLWIGDLGGEAVQSADGHS
MSMEG_1876|M.smegmatis_MC2_155 APHQVSASVSRNGQDAASVVAP-PGAPDPAATLWIGPLGGSTVQAMEGRT
Mflv_4710|M.gilvum_PYR-GCK MPGQTGAALSRSGQEVASVVTMRPGAPDMASSLWVGPLGGNAAQVMDGRS
Mvan_1754|M.vanbaalenii_PYR-1 MPGQTAASLSRTGQEVASIVTLRPGAPDMASSLWVGPLGGNASQVLDGRS
TH_0462|M.thermoresistible__bu APNQISAALSRNGQRVASVVTERPGAPDMAATMWVGPLGGQAAPAIEARS
MAB_3589c|M.abscessus_ATCC_199 VGNQVSAALSRSGRQVASVVRVQAGD-DPQMSLWVGANGANGSEAVGGKT
* .*::**.*: .**:* * * ::*:* *.. .:.
Rv3244c|M.tuberculosis_H37Rv LSRPSWSLDDAVWVVVDTNVVLRAIQDPASGQPARIPVDSTAVASRFPGA
Mb3272c|M.bovis_AF2122/97 LLRPSWSLDDAVWVVVDTNVVLRAIQDPASGQPARIPVDSTAVASRFPGA
MMAR_1301|M.marinum_M LSRPSWSLDDAVWVVVDTNNVLRAIQEPASGQPARIPVDSTAVSSRFPGA
MUL_2580|M.ulcerans_Agy99 LSRPSWSLDDAVWVVVDTNNVLRAIQEPASGQPARIPVDSTAVSSRFPGA
MLBr_00775|M.leprae_Br4923 LSRPSWSLDDAVWVVVDTNNVLRAIPEPASGQPARIPVDSAAVASRFPGP
MSMEG_1876|M.smegmatis_MC2_155 LSRPSWSLDQAVWVVADGINVVRAIRD-ASGTPARIPVDSSAVSSRYPGP
Mflv_4710|M.gilvum_PYR-GCK LTRPSWSLDDAIWVVVDGNNVVRVIQD-ASGQPARIPVDATAVLTRFPGG
Mvan_1754|M.vanbaalenii_PYR-1 LTRPSWSLDDAIWTVVDGNNVVRVIQD-ASGQPARIPVDASAVVTRFPGA
TH_0462|M.thermoresistible__bu LSRPTWALDGAVWVVVDGQNVVRVVPETASGQPARIPVDTTAVSTEFPGP
MAB_3589c|M.abscessus_ATCC_199 LTRPSWALDDAVWTVIDGGRVVRIIQEATTSMVAVLPVEPSAVAEKYKGP
* **:*:** *:*.* * *:* : : ::. * :**:.:** .: *
Rv3244c|M.tuberculosis_H37Rv INDLQLSRDGTRAAMVIGGQVILAGVEQTQAGQFALTYPRRLGFGLGSSV
Mb3272c|M.bovis_AF2122/97 INDLQLSRDGTRAAMVIGGQVILAGVEQTQAGQFALTYPRRLGFGLGSSV
MMAR_1301|M.marinum_M ITDLQLSRDGTRAAMVIDGRVILSSVEQTQAGQFALTYPRRLGFGLGTSV
MUL_2580|M.ulcerans_Agy99 ITDLQLSRDGTRAAMVIDGRVILSSVEQTQAGQFALTYPRRLGFGLGTSV
MLBr_00775|M.leprae_Br4923 ITDLQLSRDGTRAAMVIGGQVILAGVEQTQAGQFALTYPRRLGFGLGSSV
MSMEG_1876|M.smegmatis_MC2_155 ISDLQLSRDGTRAAMVIEGQVILAGIEQTQDGRFLLTYPRRLGFGLGNSA
Mflv_4710|M.gilvum_PYR-GCK IAELQLSRDGTRAAMVIGGKVILAGVEQTPGGGYALTYPRRLGYGLGENA
Mvan_1754|M.vanbaalenii_PYR-1 IAELQLSRDGTRAAMVIEGKIVLAGVEQTAGGNYALTYPRRLGYGLGETA
TH_0462|M.thermoresistible__bu IAELQLSRDGTRAAMVIEGLVVLAGVEQTPDGQYVLTHPRRLGYGLGNTA
MAB_3589c|M.abscessus_ATCC_199 ITELALSRDGTRAAMIIEGQVILATVVQTESGDYALTHPRRLGYGLGNSA
* :* **********:* * ::*: : ** * : **:*****:*** ..
Rv3244c|M.tuberculosis_H37Rv VSLSWRTGDDIVVTRTDAAHPVSYVNLDGVNSDAPSRGLQTPLTAIAANP
Mb3272c|M.bovis_AF2122/97 VSLSWRTGDDIVVTRTDAAHPVSYVNLDGVNSDAPSRGLQTPLTAIAANP
MMAR_1301|M.marinum_M VSLSWRTGDDIVVTRNDVGHPVSYVNLDGVNSDAPARGLQIPLFAIAANP
MUL_2580|M.ulcerans_Agy99 VSLSWRTGDDIVVTRNDVGHPVSYVNLDGVNSDAPARGLQIPLFAIAANP
MLBr_00775|M.leprae_Br4923 VSLSWRTGDDIVVTRTDATHPVSYVNLDGVNSDAPARGLQVPLSVIAANP
MSMEG_1876|M.smegmatis_MC2_155 VSLSWRTGDDIVVSRTDPEHPVSYVNLDGVNSDAPSRNLVMPVSVVAANP
Mflv_4710|M.gilvum_PYR-GCK LSLSWRTGDDIVVTRTDPQHPVSYVNLDGVDSDGPSRNLLMPVRSVAANP
Mvan_1754|M.vanbaalenii_PYR-1 VSLSWRTGDDIVVTRTVAQSPVSYVNLDGVNSDGPSRNLLMPVKTVAANP
TH_0462|M.thermoresistible__bu VSLSWRTGDDIVVTRTDPQNPVSYVNLDGVNSDGPSRNLLMPVRTVVASP
MAB_3589c|M.abscessus_ATCC_199 VSLAWRTGDDIAVARNDGSHPVANVNLDGVNSDLNDQNLLTPVSTVAASP
:**:*******.*:*. **: ******:** :.* *: :.*.*
Rv3244c|M.tuberculosis_H37Rv STVYVAGPQGVLMYSAS-VESRPGWADVPGLMVPGAAPVLPG
Mb3272c|M.bovis_AF2122/97 STVYVAGPQGVLMYSAS-VESRPGWADVPGLMVPGAAPVLPG
MMAR_1301|M.marinum_M STVYVAGPQGVMMYSASSAEGQQSWAEVPGLMVAGAAPVLPG
MUL_2580|M.ulcerans_Agy99 STVYVAGPQGVMMYSASSAEGQQSWAEVPGLMVTGAAPVLPG
MLBr_00775|M.leprae_Br4923 STVYVAGPQGVLQYSASVAESQQGWSEVAGLTVMGAEPVLPG
MSMEG_1876|M.smegmatis_MC2_155 STVYVADQRGVKQLSASADEENSGWVEVSPLMVPGSLPVLPG
Mflv_4710|M.gilvum_PYR-GCK SAVYVSDGRGVLQLSGSAAED-PSWVEVRPLMVAGALPVLPG
Mvan_1754|M.vanbaalenii_PYR-1 SAVYVADGRGILQLSGSAAED-PGWSEVRPLMSAGALPVLPG
TH_0462|M.thermoresistible__bu STVYVADARGVLQLSGSAAEDNLGWTEVRSLMSPGAIPVLPG
MAB_3589c|M.abscessus_ATCC_199 AAIYIADARGVLQLTGLGTPE-ERWVEVRPLMVPQAIPVLTG
:::*::. :*: :. * :* * : ***.*