For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MSDSYYELVDADDARGERFAATDLVRSTWSASIQHAAPVSALLVRALEHCERRDDTRLSRVLVDLLGPVP AEGDLWVRVRIERPGRQIELVVTELLAPGPDGEPRPVARASGWRLQTLDTVAVLHAPAAPLRPLSQARSR DMKKDWDRNYVHSLDWRWLTAPMADGPGESWIRPEVDLVGGEAMTPLQRLFAVADDANGIGTRLDIRRWT FLNTDLAVHIHRLPDGEWIGIRAETSYGPDGIGTTLGTLFDQTGAVGAIQQSVLVRPR
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_4110 | - | - | 100% (268) | hypothetical protein Mflv_4110 |
M. gilvum PYR-GCK | Mflv_4344 | - | 2e-93 | 60.82% (268) | hypothetical protein Mflv_4344 |
M. gilvum PYR-GCK | Mflv_3063 | - | 3e-47 | 40.74% (270) | hypothetical protein Mflv_3063 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | - | - | - | - | - |
M. tuberculosis H37Rv | - | - | - | - | - |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_2154c | - | 2e-50 | 41.61% (274) | hypothetical protein MAB_2154c |
M. marinum M | MMAR_0390 | - | 1e-114 | 73.98% (269) | hypothetical protein MMAR_0390 |
M. avium 104 | MAV_5133 | - | 1e-114 | 72.49% (269) | hypothetical protein MAV_5133 |
M. smegmatis MC2 155 | MSMEG_2560 | - | 1e-125 | 77.24% (268) | hypothetical protein MSMEG_2560 |
M. thermoresistible (build 8) | TH_3494 | - | 1e-120 | 73.13% (268) | PUTATIVE conserved hypothetical protein |
M. ulcerans Agy99 | MUL_2342 | - | 1e-41 | 36.40% (272) | hypothetical protein MUL_2342 |
M. vanbaalenii PYR-1 | Mvan_2236 | - | 1e-137 | 85.45% (268) | hypothetical protein Mvan_2236 |
CLUSTAL 2.0.9 multiple sequence alignment Mflv_4110|M.gilvum_PYR-GCK ----MSDSYYELVDADDARGERFAATDLVRSTWSASIQHAAPVSALLVRA Mvan_2236|M.vanbaalenii_PYR-1 ----MSDCYYELVDAADDRGEKFAATDFVRSTWSAAIQHAAPVSALLVRG MSMEG_2560|M.smegmatis_MC2_155 ----MSDSYYELLDAADTLGERFAATDMVRGTWSAAIQHAAPASALLVRA MMAR_0390|M.marinum_M ----MTDSYYELIDDADALGEKFAATDLVRGTWSASIQHGAPVSALLVRA MAV_5133|M.avium_104 ----MTDAYYELID-SDASGERFRATDLARGTWSATIQHGGPVSALLTRA TH_3494|M.thermoresistible__bu ----VSDCYYELLDADDPAGERFAPTDLVRSTWGATMQHAAPVSALLVRS MAB_2154c|M.abscessus_ATCC_199 MTLDLTGCYYRRLD-ADGEFQVFESTELTASGWGPNLQHGSPPMALLLKA MUL_2342|M.ulcerans_Agy99 ----MNGCYYRRLPGADGDYQMFDSTDFTRSNWDPDIQHGSPPLALLTKL :...**. : * : * .*::. . *.. :**..* *** : Mflv_4110|M.gilvum_PYR-GCK LEHCERR-DDTRLSRVLVDLLGPVPAEGDLWVRVRIERPGRQIELVVTEL Mvan_2236|M.vanbaalenii_PYR-1 LQRCEAR-DDTRLSRVVVDLLGPVPAEGDLWVRARRERSGKQIELISAEM MSMEG_2560|M.smegmatis_MC2_155 LEHCEPR-AETRLARVAIDLMGGVPSEGDLWVRAEVQRPGKQIELVGAEM MMAR_0390|M.marinum_M LQRCAWR-EDTRLSRVVVDLIGAVPADGDLWVSSRIERGGKQIELVSAEL MAV_5133|M.avium_104 LERCEQR-DDTRLSRVVIDLLGGVPVEGDLWVRAEVQRPGKQIELLGAQM TH_3494|M.thermoresistible__bu LQRCEQR-DDTRLSRVMIDLLGPVPADGDCWVRSRLERPGRQIELVSAEM MAB_2154c|M.abscessus_ATCC_199 IEELPEPRENLRIGRVALDILGPVPLEP-VRVRAWIERPGRRIALAVAEM MUL_2342|M.ulcerans_Agy99 IEELSAG-SGLRIGRFSLDILGAIPVAP-VRARAWVQRPGSRVAMMVAEM ::. *:.*. :*::* :* . :* * :: : ::: Mflv_4110|M.gilvum_PYR-GCK LAPGPDGEPRPVARASGWRLQTLDTVAVLHAPAAPLRPLSQARSRDMK-K Mvan_2236|M.vanbaalenii_PYR-1 LALGPDGQPRPVARASGWRLQTLDTAAVVHAPAVPLRPVSEARSRDMK-K MSMEG_2560|M.smegmatis_MC2_155 LATGPDGEPRTVARASGWRMLTLDTSTLQHTGVSPLRPLENARSHDMA-K MMAR_0390|M.marinum_M AAPGPDGRPRAVARASGWRLAQLDTQELRHAAEQPPRPLAEARNRKLAPM MAV_5133|M.avium_104 LAPGPDGAPRPVARASGWRLQHQDTGSLAHAAAPLPRPRAEAYDRNLKAR TH_3494|M.thermoresistible__bu LAAGPDGTPRPVARASGWRMQQTDTRELVSASAPPLRPVSEGRDPGYV-Q MAB_2154c|M.abscessus_ATCC_199 EARA-NGGYRAVARASAWLLATSVTADKASDRFPPLPEYP-AGPTPQAFG MUL_2342|M.ulcerans_Agy99 VA------DRVLARVTAWLLAVSDTTDVASDRYPPLVEGP-AQPRPAAFA * * :**.:.* : * . Mflv_4110|M.gilvum_PYR-GCK DWDRNYVHSLDWRWLTAPMADGPGESWIRPEVDLVGGEAMTPLQRLFAVA Mvan_2236|M.vanbaalenii_PYR-1 DWDRNYVHSLDWRWLTTPMTEGPGESWIRPEVDLVKGESMTPLERLFAVA MSMEG_2560|M.smegmatis_MC2_155 NWEPNYVHSIDWRWLTVPLAPGPGESWLRPTVDLVKGEAMTPLQRLFAVA MMAR_0390|M.marinum_M SWDRNYVHSLDWRWLTEPMTPGPGECWIKPTVDLVNGETMTPLERLFAVA MAV_5133|M.avium_104 DWDRNYVHSLQWLWLTEPLSEGPGESWISPTVDLVKGESMTRLQRLFAVA TH_3494|M.thermoresistible__bu DWDTNYLHSVQWRWLTRPLQESPGESWLRPTVDIVKGEQMSQLERLFAVA MAB_2154c|M.abscessus_ATCC_199 FEGSNYSKSVDFQWFTVPNGE-PQVAWMRPHVHIVDTEPTTPWQRLASVI MUL_2342|M.ulcerans_Agy99 GVGG-YFDALSWRPQDTEGQP-AAVSWFRPTAHIVDTDPASPLQQLAAVV * .::.: . .*: * ..:* : : ::* :* Mflv_4110|M.gilvum_PYR-GCK DDANGIGTRLDIRRWTFLNTDLAVHIHRLPDGEWIGIRAETSYGPDGIGT Mvan_2236|M.vanbaalenii_PYR-1 DDANGIGTKLDIRKWTFLNTDLAVHIHRVPGGEWVGIRAETNYGPDGIGT MSMEG_2560|M.smegmatis_MC2_155 DDANGIGSKLDIRKWTFLNTDLVVHVHRIPEGEWIGIRAETSYGPDGIGT MMAR_0390|M.marinum_M DCANGIGSKLDITKWTFLNTDLAVHVFRIPAGDWIGIRAETSYGPDGIGT MAV_5133|M.avium_104 DCANGIGSKLDITKWTFVNTDLAVHVFRVPDGDWIGIRAETSYGPDGIGT TH_3494|M.thermoresistible__bu DDANGIGSKIDIRNWTFLNTDLVVHVHRVPDGEWIGIRAETSYGPDGVGT MAB_2154c|M.abscessus_ATCC_199 DSANGIGAVLNPLRFVYMNTDTVMHVHRIPQGDEFGVRARMSVGPDGVGV MUL_2342|M.ulcerans_Agy99 DCANGVGAILDPNRFLFMNTDTVVHLHRLPTGTDFALRARASVGPDGLGV * ***:*: :: .: ::*** .:*:.*:* * ..:**. . ****:*. Mflv_4110|M.gilvum_PYR-GCK TLGTLFDQTGAVGAIQQSVLVRPR-------- Mvan_2236|M.vanbaalenii_PYR-1 TLGTLFDETGAVGAIQQSVLVRPRPPKQPAAE MSMEG_2560|M.smegmatis_MC2_155 TVGTLFDFSGAVGAIQQSVLVRPRPPRS---- MMAR_0390|M.marinum_M AAGTLFDQQGAVGTIAQSVLVRRRAR------ MAV_5133|M.avium_104 TIGTLFDEQGAVGAIQQSVLVRRRPGRA---- TH_3494|M.thermoresistible__bu TIGTLFDESGAVGAIQQSVLVRRR-------- MAB_2154c|M.abscessus_ATCC_199 TTAEIFDRQGHIGSSAQTVLVQRR-------- MUL_2342|M.ulcerans_Agy99 TTAEIFDTTGFVGTSAQTLLVRRR-------- : . :** * :*: *::**: *