For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
CSRRVVLSVASDSVRNSSITCSIHRTPDRVLFEHKSESEPRTKGRQMTILDDRQTWNEFERAPRLRVGDG RVRAVAPSRQPRPQRPAGAAVRYRGTGVLVSRASHRRRPITPMATVGLALVAGAITLWLGLVAQVGGVSG AETQMPGRLAVVQVQSGESLQHVARRVAPDAPVTEVVARIQELNELDSAAVDAGQTLIAPVA*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. gilvum PYR-GCK | Mflv_3955 | - | - | 100% (203) | peptidoglycan-binding LysM |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2738c | - | 2e-32 | 54.81% (135) | hypothetical protein Mb2738c |
| M. tuberculosis H37Rv | Rv2719c | - | 2e-32 | 54.81% (135) | hypothetical protein Rv2719c |
| M. leprae Br4923 | MLBr_01004 | - | 1e-33 | 57.25% (131) | hypothetical protein MLBr_01004 |
| M. abscessus ATCC 19977 | MAB_3037c | - | 2e-28 | 50.00% (132) | hypothetical protein MAB_3037c |
| M. marinum M | MMAR_1993 | - | 1e-34 | 58.57% (140) | hypothetical protein MMAR_1993 |
| M. avium 104 | MAV_3613 | - | 2e-36 | 62.50% (128) | LysM domain-containing protein |
| M. smegmatis MC2 155 | MSMEG_2742 | - | 5e-44 | 69.92% (133) | DNA-damage-inducible protein |
| M. thermoresistible (build 8) | TH_2886 | - | 3e-15 | 74.51% (51) | PUTATIVE - |
| M. ulcerans Agy99 | MUL_3362 | - | 9e-34 | 56.43% (140) | hypothetical protein MUL_3362 |
| M. vanbaalenii PYR-1 | Mvan_2442 | - | 2e-78 | 74.49% (196) | peptidoglycan-binding LysM |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_3955|M.gilvum_PYR-GCK MCSRRVVLSVASDSVRNSSITCSIHRTPDRVLFEHKSESEPRTKGRQMTI
Mvan_2442|M.vanbaalenii_PYR-1 -MELVGNLSGRRGTFRNSSITCSINRTPDRLVFEHKSEYRPRSKGEQMTI
MSMEG_2742|M.smegmatis_MC2_155 ----MAILDIPVDIPVDIPVAANVATRRTGGTGARAAAARTPDRGSVRTV
TH_2886|M.thermoresistible__bu --------------------------------------------------
MLBr_01004|M.leprae_Br4923 ----MLVIYAVPPLIGNVRHPMS---------RPILG----PRCGSGE--
MAV_3613|M.avium_104 ----MTVIHTLAPRPSSLRRPVN---------GPVQG----VRYGRDG--
Mb2738c|M.bovis_AF2122/97 -------MTPVRPPHTPDPLNL---------RGPLDG----PRWRRAE--
Rv2719c|M.tuberculosis_H37Rv -------MTPVRPPHTPDPLNL---------RGPLDG----PRWRRAE--
MMAR_1993|M.marinum_M ----MTLMQAVQPVSPAVPVRLGTREARRFIRGPVGGAIHEPVTGRGR--
MUL_3362|M.ulcerans_Agy99 ----MTLMQAVQPVSPAVPVRLGTREARRFIRGPVGGTIHEPVTGRGR--
MAB_3037c|M.abscessus_ATCC_199 ----MSTNVLTPPRSSHAREGAP-----REYAPPARAYSAEYPLTQRR--
Mflv_3955|M.gilvum_PYR-GCK LDDRQTWNEFERAPRLRVGDGRVRAVAPSRQPRPQRPAGAAVRYRGTGVL
Mvan_2442|M.vanbaalenii_PYR-1 LDDRETWNEFERAPRLQVGGGRVRPVVPVRRSPSRRPGGAPVRYRGTGVL
MSMEG_2742|M.smegmatis_MC2_155 PASR------------RV---RPRGERPVRRPQPGRPGGAALRHRGTGVL
TH_2886|M.thermoresistible__bu --------------------------------------------------
MLBr_01004|M.leprae_Br4923 -------------------------SAGSRRPAPSRSASAPMRYSGASVA
MAV_3613|M.avium_104 -------------------------LTRPRRPGPVRPAGAATRYHGTGVA
Mb2738c|M.bovis_AF2122/97 -------------------------PAQSRRPGRSRPGGAPLRYHRTGVG
Rv2719c|M.tuberculosis_H37Rv -------------------------PAQSRRPGRSRPGGAPLRYHRTGVG
MMAR_1993|M.marinum_M -------------------------LATSRRVRPSRPAVAPLSYRGTGVA
MUL_3362|M.ulcerans_Agy99 -------------------------LATSRRVRPSRPAVAPLSYRGTGVA
MAB_3037c|M.abscessus_ATCC_199 -------------------------ALPVRTVAYRRPAGRPVAYRGNGIR
Mflv_3955|M.gilvum_PYR-GCK VSRAS---HRRRPITPMATVGLALVAGAITLWLGLVAQVGGVSG------
Mvan_2442|M.vanbaalenii_PYR-1 VSRAP---HRRRPITPATTVLLALVAAAITLWLGLVGQFGELVG------
MSMEG_2742|M.smegmatis_MC2_155 MSRAS---HRR-PITPATTVVLALVAAGITVWLGLVAQFGGVLGS-----
TH_2886|M.thermoresistible__bu --------------------------------------------------
MLBr_01004|M.leprae_Br4923 MLVAP---HRGRTVSLAKTIGLALLAGMITLWLGLMADVSQVIDGDATG-
MAV_3613|M.avium_104 MSIAP---HRRRSVTWVTTVGLALAAGAITLWLGLVANVGQVLNGDAPS-
Mb2738c|M.bovis_AF2122/97 MSRTG---HGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADG
Rv2719c|M.tuberculosis_H37Rv MSRTG---HGSRPVPPATTVGLALLAAAITLWLGLVAQFGQMITGGSADG
MMAR_1993|M.marinum_M LSATA---HRRRPASVATTVGLALLAAIITLWLGLVAHFGEMANGGSANV
MUL_3362|M.ulcerans_Agy99 LSATA---HRRRPASVATTVGLTLLAAIITLWLGLVAHFGEMANGGSANV
MAB_3037c|M.abscessus_ATCC_199 VSGVAHRVHRRRPVSLKATIVVAVGAAVATMWLLMLGQVSAAGIG-----
Mflv_3955|M.gilvum_PYR-GCK ---AETQMPGRLAVVQVQSGESLQHVARRVAPDAPVTEVVARIQELNELD
Mvan_2442|M.vanbaalenii_PYR-1 ---DQAEIPGRLAVVQVQSGESLQHVAQRVAPDAPVADVVDRIRELNKLE
MSMEG_2742|M.smegmatis_MC2_155 --SAPVSVPSELAVVQVQSGETLQQVARRVAPDAPVAAVVQQIRDLNQLE
TH_2886|M.thermoresistible__bu -------------VVQVQHGETLHQVAQRVAPDAPVAAVVERIRELNQLD
MLBr_01004|M.leprae_Br4923 ---FVTHVPNRLAVVRVEAGESLQDVAARVAPDAPVRQVSERIRELNVLD
MAV_3613|M.avium_104 ---SAAHVPDRLAVVRVDPGESLSDVAHRVAPDAPAAQVADRIRELNDLN
Mb2738c|M.bovis_AF2122/97 SADSTGRVPDRLAVVRVETGESLHDVAVRVAPNAPTRQVADRIRELNGLQ
Rv2719c|M.tuberculosis_H37Rv SADSTGRVPDRLAVVRVETGESLYDVAVRVAPNAPTRQVADRIRELNGLQ
MMAR_1993|M.marinum_M SPISSG-VPDRLAVVRVDAGESLQDVAARVAPDAPVRQVVERIRELNALG
MUL_3362|M.ulcerans_Agy99 SPISSG-VPDRLTVVRVDAGESLQDVAARVAPDAPVRQVVERIRELNALG
MAB_3037c|M.abscessus_ATCC_199 ----GAGVPDRLAVVQVAPGETLADVASRVAPEAPRSAVVSKIRELNELD
**:* **:* .** ****:** * :*::** *
Mflv_3955|M.gilvum_PYR-GCK SAAVDAGQTLIAPVA
Mvan_2442|M.vanbaalenii_PYR-1 SVALDAGQTLIAPVA
MSMEG_2742|M.smegmatis_MC2_155 SAALDAGQTLIAPVG
TH_2886|M.thermoresistible__bu SAALAAGQTLIAPIG
MLBr_01004|M.leprae_Br4923 SSMLVAGQTLIAPVG
MAV_3613|M.avium_104 SPTLLAGQTLIAPVG
Mb2738c|M.bovis_AF2122/97 TPALAVGQTLIAPVG
Rv2719c|M.tuberculosis_H37Rv TPALAVGQTLIAPVG
MMAR_1993|M.marinum_M SSMPASGQTLIAPVG
MUL_3362|M.ulcerans_Agy99 SSMPASGQTLVAPVG
MAB_3037c|M.abscessus_ATCC_199 SATVQAGQTLVSPVG
: ****::*:.