For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
AAQSKQAKPSGKQGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSLRERHASLVDAFATVDDGEVWL RNLHIPEYLHGTWTNHEPRRNRKLLLHRRQIDTLFGKIREGNFALVPLSMYFLDGKVKVELALARGKHAH DKRQDLARRDAQREVIRELGRRAKGMG*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. ulcerans Agy99 | MUL_2407 | smpB | - | 100% (168) | SsrA-binding protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3127c | smpB | 1e-75 | 86.36% (154) | SsrA-binding protein |
| M. gilvum PYR-GCK | Mflv_4446 | smpB | 1e-68 | 77.71% (157) | SsrA-binding protein |
| M. tuberculosis H37Rv | Rv3100c | smpB | 1e-75 | 86.36% (154) | SsrA-binding protein |
| M. leprae Br4923 | MLBr_00671 | smpB | 7e-75 | 85.06% (154) | SsrA-binding protein |
| M. abscessus ATCC 19977 | MAB_3473c | - | 4e-69 | 80.92% (152) | SsrA-binding protein |
| M. marinum M | MMAR_1532 | smpB | 2e-93 | 99.40% (168) | ssRNA-binding protein SmpB |
| M. avium 104 | MAV_4001 | - | 3e-19 | 80.77% (52) | SsrA-binding protein |
| M. smegmatis MC2 155 | MSMEG_2091 | smpB | 8e-70 | 81.88% (149) | SsrA-binding protein |
| M. thermoresistible (build 8) | TH_2155 | smpB | 1e-72 | 77.91% (163) | PROBABLE SSRA-BINDING PROTEIN SMPB |
| M. vanbaalenii PYR-1 | Mvan_1916 | smpB | 3e-70 | 78.71% (155) | SsrA-binding protein |
CLUSTAL 2.0.9 multiple sequence alignment
MUL_2407|M.ulcerans_Agy99 MAAQSKQAKPSGKQGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSL
MMAR_1532|M.marinum_M MAAQSKQAKPSGKQGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSL
Mb3127c|M.bovis_AF2122/97 MSKSSR--------GGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSL
Rv3100c|M.tuberculosis_H37Rv MSKSSR--------GGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSL
MLBr_00671|M.leprae_Br4923 MARNPR--------GGKQIVATNRKARHDYAIIELFEAGVALLGTEVKSL
MAV_4001|M.avium_104 --------------------------------------------------
Mflv_4446|M.gilvum_PYR-GCK MAKKPK----SVKDTNNMVVASNRKARHNYSILETYEAGVALVGTEVKSL
Mvan_1916|M.vanbaalenii_PYR-1 MAKKPK----AVKDSNNQVVATNRKARHNYSILDTYEAGIALMGTEVKSL
MSMEG_2091|M.smegmatis_MC2_155 MTKKS-------ASSNNKVVATNRKARHNYTILDTYEAGIVLMGTEVKSL
MAB_3473c|M.abscessus_ATCC_199 MSKK------PAD--GRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTL
TH_2155|M.thermoresistible__bu MAKKGAKQAGPARPGGRQVIATNRKARHNYTILDTYEAGIALVGTEVKSL
MUL_2407|M.ulcerans_Agy99 RERHASLVDAFATVDDGEVWLRNLHIPEYLHGTWTNHEPRRNRKLLLHRR
MMAR_1532|M.marinum_M REGHASLVDAFATVDDGEVWLRNLHIPEYLHGTWTNHEPRRNRKLLLHRR
Mb3127c|M.bovis_AF2122/97 REGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRR
Rv3100c|M.tuberculosis_H37Rv REGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRR
MLBr_00671|M.leprae_Br4923 REGHASLADAFATVDSGEVWLRNMHIPEYQHGSWTNHDPRRNRKLLLHRR
MAV_4001|M.avium_104 --------------------------------------------------
Mflv_4446|M.gilvum_PYR-GCK RDGTASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRRNRKLLMHRR
Mvan_1916|M.vanbaalenii_PYR-1 REGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRRNRKLLMHRR
MSMEG_2091|M.smegmatis_MC2_155 REGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRRNRKLLLHRK
MAB_3473c|M.abscessus_ATCC_199 REGKASLVDAFATVDDGEVWLRGVHIPQYDHGTWTNHAPLRNRKLLLHRA
TH_2155|M.thermoresistible__bu REGHASLTDAFATIDDGEVWLRNLHIPEYHHGTWTNHAPRRNRKLLLHRR
MUL_2407|M.ulcerans_Agy99 QIDTLFGKIREGNFALVPLSMYFLDGKVKVELALARGKHAHDKRQDLARR
MMAR_1532|M.marinum_M QIDTLFGKIREGNFALVPLSMYFLDGKVKVELALARGKHAHDKRQDLARR
Mb3127c|M.bovis_AF2122/97 QIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGKQARDKRQDMARR
Rv3100c|M.tuberculosis_H37Rv QIDTLVGKIREGNFALVPLSLYFAEGKVKVELALARGKQARDKRQDMARR
MLBr_00671|M.leprae_Br4923 QIDTLVGKIRDGNLALVPLSLYFAEGKVKVELALARGKKLHDKRQDMARR
MAV_4001|M.avium_104 ---------------MMPLSLYFSEGKVKVELALARGKKAYDKRQDLAQR
Mflv_4446|M.gilvum_PYR-GCK EIDNLVGKIRDGNLTLVPLSLYFTGGKVKVELALARGKQAHDKRQDMARR
Mvan_1916|M.vanbaalenii_PYR-1 EIDNLVGKIRDGNLTLVPLSLYFTGGKVKVELALARGKQAHDKRQDMARR
MSMEG_2091|M.smegmatis_MC2_155 QIDNLIGKIRDGNLTLVPLSIYFTDGKVKVELALARGKQAHDKRQDLARR
MAB_3473c|M.abscessus_ATCC_199 QIDMLVGKTRDGNLTLVPLSLYFLDGKVKVELALARGKQAHDKRQDIAKR
TH_2155|M.thermoresistible__bu QIDQLTGKLRDGNLTLVPLSLYFSEGKVKVELALARGKQAHDKRQDLAKR
::***:** *************: *****:*:*
MUL_2407|M.ulcerans_Agy99 DAQREVIRELGRRAKGMG-
MMAR_1532|M.marinum_M DAQREVIRELGRRAKGMG-
Mb3127c|M.bovis_AF2122/97 DAQREVLRELGRRAKGMT-
Rv3100c|M.tuberculosis_H37Rv DAQREVLRELGRRAKGMT-
MLBr_00671|M.leprae_Br4923 DAQREVIRELGRRAKGML-
MAV_4001|M.avium_104 DAQREVVRQLGRRTKGMI-
Mflv_4446|M.gilvum_PYR-GCK DAQREVTRELGRRVKGMTN
Mvan_1916|M.vanbaalenii_PYR-1 DAQREVTRELGRRVKGMTS
MSMEG_2091|M.smegmatis_MC2_155 DAQREVIRELGRRAKGKI-
MAB_3473c|M.abscessus_ATCC_199 DASREITRELGRRAKGM--
TH_2155|M.thermoresistible__bu DAEREITRALGRRAKGMR-
**.**: * ****.**