For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. smegmatis MC2 155 MSMEG_5054 (-)

annotation: ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein
coordinates: 5155073 - 5155915
length: 280

RRILVPAVLVVLALIATGCGGQSGTPPIRVGAAPGAESALIGHLYAAALRYYGSPAEVVETDEGLGALDS
SAVTVLPGFTGQLLVALDPGASARADEQVYRDLLSALPEGVAAGDYTTSAQDKPALVATEATTRAWDGTD
LAALRRHCAQVRPGAVAGAQVPAAIGQCTPAKPVRFDDEDTLFAALDAGRINVAWSRTADPEIPSHLVVL
ADRTSLIRAENIVPLYRRNELDERQIRALNEIAGVLDTGSLADMRRKVAEGADPGAVADEFLQANPLGH*

Operon Prediction Model: Genebank

Paralogs

species id gene e-value identity (len) annotation
M. smegmatis MC2 155 MSMEG_5054 - - 100% (280) ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein
M. smegmatis MC2 155 MSMEG_6334 - 7e-15 28.90% (218) ABC transporter, quaternary amine uptake transporter (QAT)

Closest Orthologs (e-value cutoff: 1e-4)

species id gene e-value identity (len) annotation
M. bovis AF2122 / 97 Mb1276 lpqZ 3e-76 52.67% (281) putative lipoprotein LPQZ
M. gilvum PYR-GCK Mflv_2215 - 1e-81 61.76% (238) substrate-binding region of ABC-type glycine betaine transport
M. tuberculosis H37Rv Rv1244 lpqZ 1e-76 53.02% (281) lipoprotein LpqZ
M. leprae Br4923 MLBr_01093 - 1e-68 47.94% (267) lipoprotein
M. abscessus ATCC 19977 MAB_1385 - 1e-42 38.89% (270) lipoprotein LpqZ
M. marinum M MMAR_4196 lpqZ 3e-72 49.82% (275) lipoprotein LpqZ
M. avium 104 MAV_1383 - 9e-72 48.95% (286) LpqZ protein
M. thermoresistible (build 8) - - - - -
M. ulcerans Agy99 MUL_4502 lpqZ 2e-71 49.09% (275) lipoprotein LpqZ
M. vanbaalenii PYR-1 Mvan_4480 - 9e-87 59.63% (270) substrate-binding region of ABC-type glycine betaine transport

CLUSTAL 2.0.9 multiple sequence alignment


Mflv_2215|M.gilvum_PYR-GCK          -------------------------------------------------M
Mvan_4480|M.vanbaalenii_PYR-1       ---------MLVAAAIAAG--------CGGQSPPPSIPVGAPADPESQLI
MSMEG_5054|M.smegmatis_MC2_155      MRRILVPAVLVVLALIATG--------CGGQSGTPPIRVGAAPGAESALI
MMAR_4196|M.marinum_M               -MKIGRLAALLLTAALVVA---GCG--GGDRRGAAELVVGATADSESTLL
MUL_4502|M.ulcerans_Agy99           -MKIGRLAALLLTAALVVA---GCG--SGDRRGAAELVVGATADSESTLL
MAV_1383|M.avium_104                -MRIGRLVAPLLTALLAVT---GCTTDTGDRRAHAEVVVGSRPDASSTLL
Mb1276|M.bovis_AF2122/97            -MRITRILALLLAVLLAVSGVAGCSADTGDR--HPELVVGSTPDSEAMLL
Rv1244|M.tuberculosis_H37Rv         -MRITRILALLLAVLLAVSGVAGCSADTGDR--HPELVVGSTPDSEAMLL
MLBr_01093|M.leprae_Br4923          -MRVGRLAALLLAG-VGVFVAGGCATDRGDR--HPELVVGSKPDSESTLL
MAB_1385|M.abscessus_ATCC_1997      --------MLLAAVAVLAG-------CSENHGPAPYLTVVTTNDAQYRVL
                                                                                     :

Mflv_2215|M.gilvum_PYR-GCK          AHLYTAALRFYGNPAHVQVADDPLGALDSGEVRVAPGLTGELLARFAPDS
Mvan_4480|M.vanbaalenii_PYR-1       AHLYAAALRFYGNPAHVQVTDAPLDLLDAGEIRVVPGFTGQLLQRFAPDA
MSMEG_5054|M.smegmatis_MC2_155      GHLYAAALRYYGSPAEVVETDEGLGALDSSAVTVLPGFTGQLLVALDPGA
MMAR_4196|M.marinum_M               ADIYVAALRSYGFPARAATAADPMAKLDSGDFTVVPAFTGEVLRALQPSA
MUL_4502|M.ulcerans_Agy99           ADIYVAALRSYGFPARAATAADPMAKLDSGDFTVVPAFTGEVLRALQPSA
MAV_1383|M.avium_104                AGIYVAALRSYGFAARPATAGDPTAQLDSGAFTVVPAFTGRVLQALQPGA
Mb1276|M.bovis_AF2122/97            AAIYVAALRSYGFAAHAETAADPVAKLDSGAFTVVPAFTGQMLQTLQPDA
Rv1244|M.tuberculosis_H37Rv         AAIYVAALRSYGFAAHAETAADPVAKLDSGAFTVVPAFTGQMLQTLQPDA
MLBr_01093|M.leprae_Br4923          AAIYVAALRSYGFGARGETGADPMAMLDSGGFTVVPGFTGKVLQILQPRA
MAB_1385|M.abscessus_ATCC_1997      AHIYAAVVKATGIDTKVRESADPVTELDTGIASVAPGFTGRVLRRFAPQQ
                                    . :*.*.::  *  :.          **:.   * *.:**.:*  : *  

Mflv_2215|M.gilvum_PYR-GCK          AARSDVQ-VYRTLLSALPEGVAAGDYTTSAEDKPAIAVTERTAGEWD---
Mvan_4480|M.vanbaalenii_PYR-1       SARADVQ-VYRALLSVLPEGVAAGDYTTAAEDKPAVAVTERTADEWG---
MSMEG_5054|M.smegmatis_MC2_155      SARADEQ-VYRDLLSALPEGVAAGDYTTSAQDKPALVATEATTRAWD---
MMAR_4196|M.marinum_M               TALSDKE-VYRAMVSALPEGIAAGDYATAAEDKPALMITQATADGWG---
MUL_4502|M.ulcerans_Agy99           TALSDKE-VYRAMVSALPEGIAAGDYATAAEDKPALMITQATADGWG---
MAV_1383|M.avium_104                TAMSDKD-VYRAMIAALPEGIVAGDYTTAAEDKPVLLVSRSTAQAWGGSD
Mb1276|M.bovis_AF2122/97            SVRSDAQ-VYRAIVSALPEGIAAGDYTTAAEDKPALVVTQSTAKAWG---
Rv1244|M.tuberculosis_H37Rv         SVRSDAQ-VYRAIVSALPEGIAAGDYTTAAEDKPALVVTQSTAKAWG---
MLBr_01093|M.leprae_Br4923          AVLSAAR-VYRAMVSALPEGIAAGDYTTAAEDKPTLVVTPDTAKAWS---
MAB_1385|M.abscessus_ATCC_1997      RPSGDEETAYKAMIAALPAGVAAADYGT-AEDRAALAVTSSPGASAK---
                                       .    .*: :::.** *:.*.** * *:*:..:  :  .        

Mflv_2215|M.gilvum_PYR-GCK          -GGDVAALARSCPDIAVG-AVRSEPRP-ARVGTCTLPDAREFPDDDAMFG
Mvan_4480|M.vanbaalenii_PYR-1       -GRDVIAVTRRCDDVSVG-AVGSTAHP-LSVGTCRLPEARRFADAEAMFE
MSMEG_5054|M.smegmatis_MC2_155      -GTDLAALRRHCAQVRPG-AVAGAQVP-AAIGQCTPAKPVRFDDEDTLFA
MMAR_4196|M.marinum_M               -SSELSVLARHCDGLVVG-KVGGGATP-AMVGPCRLPAAGEFPDGAAMFA
MUL_4502|M.ulcerans_Agy99           -SSELSVLARHCDGLVVG-KVGGGATP-AMVGPCRLPAAGEFPDGAAMFA
MAV_1383|M.avium_104                VSADLSTLPRHCDGLVVG-TVAGRPAP-PAVGSCRLAAPREFPDAATMFA
Mb1276|M.bovis_AF2122/97            -GGDLSELPSHCRGLLVG-RVAGAHTP-AAVGPCRLPAPREFRNDATMFA
Rv1244|M.tuberculosis_H37Rv         -GGDLSELPSHCRGLLVG-RVAGAHTP-AAVGPCRLPAPREFRNDATMFA
MLBr_01093|M.leprae_Br4923          -GSDLSLVLSHCNELVVG-IVAGTHTP-SAVGSCRLPAAREFPDYPTMFA
MAB_1385|M.abscessus_ATCC_1997      --PTLAAFVRHCDQLARGGQVGQGPVPLPRIGSCATGTPRQYASAGELFA
                                        :  .   *  :  *  *     *   :* *    . .: .   :* 

Mflv_2215|M.gilvum_PYR-GCK          ALRSGRIDAAWTSTAAPDVPSEVVVLSD-KTSLIRAENVVPLYRRNELNE
Mvan_4480|M.vanbaalenii_PYR-1       ALRAGQLDVAWTTTAAPDVPSEVVVLSD-KTALIRAENLVPLYRRNELTE
MSMEG_5054|M.smegmatis_MC2_155      ALDAGRINVAWSRTADPEIPSHLVVLAD-RTSLIRAENIVPLYRRNELDE
MMAR_4196|M.marinum_M               RLRDGRLTAAWTSTANPAVPAGLVMLTDGKPALIRAENVVPLYRRNALNE
MUL_4502|M.ulcerans_Agy99           RLRDGRLTAAWTSTANPAVPAGLVMLTDGKPALIRADNVVPLYRRNALNE
MAV_1383|M.avium_104                AVRAGQLTAGWTTTADPGTPADLVALADGKPALIRAENVVPVYRRNALSE
Mb1276|M.bovis_AF2122/97            ALRAGQLVAAWTTTADPDIPADLIMLTDGKPALIRAENIVPLYRRNALTE
Rv1244|M.tuberculosis_H37Rv         ALRAGQLVAAWTTTADPDIPADLIMLTDGKPALIRAENIVPLYRRNALTE
MLBr_01093|M.leprae_Br4923          ALRAGQLTAGWTTTANPDLPADLIVLTDGKATLIQAENVVPLYRRNVLTD
MAB_1385|M.abscessus_ATCC_1997      ALRRGEVAVAWTSTANPALPADGVTLLDDEKQWLPANSVVPLYRRNELTE
                                     :  *.: ..*: ** *  *:  : * * .   : *:.:**:**** * :

Mflv_2215|M.gilvum_PYR-GCK          SQVLALNEIAGVLDTGSLADMRRQLAEGTDPGLVAGQWLEEHPLGVGH
Mvan_4480|M.vanbaalenii_PYR-1       SQVLALNEIAGVLDAGSLADMRRQVAEGVEPGLVAGQWLDEHPLGVGN
MSMEG_5054|M.smegmatis_MC2_155      RQIRALNEIAGVLDTGSLADMRRKVAEGADPGAVADEFLQANPLGH--
MMAR_4196|M.marinum_M               RQLLAVNEVGGVLDTAALVDMRRQVAGGADPQAVAAGWLGEHPLGR--
MUL_4502|M.ulcerans_Agy99           RQLLAVNEVGGVLDTAALVDMRRQVAGGADPQAVAAGWLGEHPLGR--
MAV_1383|M.avium_104                RQLLAINEVAGVLDTAALVDMRRQVDTGADPQAVAGGWLAEHPLGR--
Mb1276|M.bovis_AF2122/97            RKLLAVNEVAGVLDTTALIGMRRQVAAGADPAAVAAGWLAEHPLGR--
Rv1244|M.tuberculosis_H37Rv         RQLLAVNEVAGVLDTTALIGMRRQVAAGADPAAVAAGWLAEHPLGR--
MLBr_01093|M.leprae_Br4923          RQMLAINEVAGVLDTAALIEMRRQVIRGADSQAIADGWLAEHPMGR--
MAB_1385|M.abscessus_ATCC_1997      AQVLSLNKVAGELTTGDLAAMTREVSGGADPQRVVGTWLNDHQILLRG
                                     :: ::*::.* * :  *  * *::  *.:.  :.  :*  : :

species	id	gene	e-value	identity (len)	annotation
M. smegmatis MC2 155	MSMEG_5054	-	-	100% (280)	ABC transporter, quaternary amine uptake transporter (QAT) family protein, substrate-binding protein
M. smegmatis MC2 155	MSMEG_6334	-	7e-15	28.90% (218)	ABC transporter, quaternary amine uptake transporter (QAT)