For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
TLVATDQHACEAGDRTTTRRSVVPRTLQKGWLPAVAVIAVGVGSVTVWKVHEMSAPVPVATVLAAQAPEQ FTPKRMTYELFGSPGSGGLLTYVDVDGHPHRVDIAELPWSHTETTTLTVVSGSISGQVKGGEVGCRILVN DRVRDEHSSSHANADVTCRVKSA*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_3585 | - | - | 100% (164) | MmpS2 protein |
| M. smegmatis MC2 155 | MSMEG_0186 | - | 2e-75 | 81.10% (164) | MmpS2 protein |
| M. smegmatis MC2 155 | MSMEG_1381 | - | 7e-23 | 40.30% (134) | MmpS5 protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0410c | mmpS1 | 3e-22 | 39.55% (134) | membrane protein |
| M. gilvum PYR-GCK | Mflv_3028 | - | 2e-19 | 34.06% (138) | membrane family protein |
| M. tuberculosis H37Rv | Rv0403c | mmpS1 | 3e-22 | 39.55% (134) | membrane protein |
| M. leprae Br4923 | MLBr_02377 | - | 1e-22 | 36.17% (141) | hypothetical protein MLBr_02377 |
| M. abscessus ATCC 19977 | MAB_4769c | - | 2e-54 | 66.67% (144) | membrane protein MmpS |
| M. marinum M | MMAR_3049 | mmpS4_1 | 5e-22 | 35.25% (139) | membrane transporter |
| M. avium 104 | MAV_3953 | - | 1e-49 | 65.69% (137) | MmpS2 protein |
| M. thermoresistible (build 8) | TH_2866 | - | 2e-22 | 33.10% (145) | PUTATIVE hypothetical protein Mvan_3834 |
| M. ulcerans Agy99 | MUL_2293 | mmpS4_1 | 3e-22 | 35.25% (139) | membrane transporter |
| M. vanbaalenii PYR-1 | Mvan_1058 | - | 3e-23 | 39.86% (138) | hypothetical protein Mvan_1058 |
CLUSTAL 2.0.9 multiple sequence alignment
MLBr_02377|M.leprae_Br4923 ------------MSKRQRGKGISIFKLLSRIWIPLVILVVLVVGGFVVYR
TH_2866|M.thermoresistible__bu -------------LWTSKAKDSAILTRLARAWIPLVMVVVVAIGGFAVWR
Mb0410c|M.bovis_AF2122/97 -----------------------MFGVAKRFWIPMVIVIVVAVAAVTVSR
Rv0403c|M.tuberculosis_H37Rv -----------------------MFGVAKRFWIPMVIVIVVAVAAVTVSR
Mflv_3028|M.gilvum_PYR-GCK -----------------------MITVVKRVWLPVLIVVALAIGFVSISY
Mvan_1058|M.vanbaalenii_PYR-1 -----------------------MITVVKRVWLPVLVIAAVAVGAVTVAN
MMAR_3049|M.marinum_M -----------------------MFTFLKRAWVPIVVVIAVAIGGTAVDR
MUL_2293|M.ulcerans_Agy99 -----------------------MFTFLKRAWVPIVVVIAVAIGGTAVDR
MAB_4769c|M.abscessus_ATCC_199 -----------------MSPRSVGRTALARAWMPLVAAIALGVASVSMWK
MAV_3953|M.avium_104 --------------------------MLARIWMPLVAVVAVGVGLLCMYK
MSMEG_3585|M.smegmatis_MC2_155 MTLVATDQHACEAGDRTTTRRSVVPRTLQKGWLPAVAVIAVGVGSVTVWK
: *:* : .: :. :
MLBr_02377|M.leprae_Br4923 VHSYFASEKRESYADSNLGSSKPFNPKQIVYEVFGPPGTVADISYFDANS
TH_2866|M.thermoresistible__bu IRGIFGSEQLPTYAGSTSVDTDKANPKRVRYEIFGAPGTVADINYIDAEG
Mb0410c|M.bovis_AF2122/97 LHSVFGSHQHAPDTG-NLDPIIAFYPKHVLYEVFGPPGTVASINYLDADA
Rv0403c|M.tuberculosis_H37Rv LHSVFGSHQHAPDTG-NLDPIIAFYPKHVLYEVFGPPGTVASINYLDADA
Mflv_3028|M.gilvum_PYR-GCK LRSVFGSNGAVVTP-VGSDTAEDFNPTVVTYEVFG-TGSFAVINYTDLDG
Mvan_1058|M.vanbaalenii_PYR-1 LRSVFGSDKAIVTP-VDADTAENFNPKVVTYEIFG-SGSTATINYADLDG
MMAR_3049|M.marinum_M LRGVFGSDEIFSSTGSSVETIVPFNPKQVTYEVFGPSGTAGSVSYLNKNA
MUL_2293|M.ulcerans_Agy99 LRGVFGSDEIFSSTGSSVETIVPFNPKQVTYEVFGPSGTAGSVSYLNKNA
MAB_4769c|M.abscessus_ATCC_199 VHQMSAPEPVITVN--QPQAPPEFTPKTLTYEVFGAPGEGGMLSYVDIDG
MAV_3953|M.avium_104 VHQFSEPEPVITVN--GPQAPEQFNLKRITYEVFGSVGQGGKLVYVDIDG
MSMEG_3585|M.smegmatis_MC2_155 VHEMSAPVPVATVL--AAQAPEQFTPKRMTYELFGSPGSGGLLTYVDVDG
:: . . : **:** * . : * : :.
MLBr_02377|M.leprae_Br4923 DPQRIDGAQLPWSLLMTTTLAAVMGNLVAQGNTDSIGCRIIVDGVVKAER
TH_2866|M.thermoresistible__bu DPHQVNGATLPWSIEIVTNSPAMAGNVLAQGDSDFIGCRIVSDGVVKDER
Mb0410c|M.bovis_AF2122/97 QPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREER
Rv0403c|M.tuberculosis_H37Rv QPHEVVNAAVPWSFTIVTTLTAVVANVVARGDGASLGCRITVNEVIREER
Mflv_3028|M.gilvum_PYR-GCK LPQRTGQVSLPWTLTLETTIPSVRPDLLAQGNGQFIGCRVTVDGEVEDER
Mvan_1058|M.vanbaalenii_PYR-1 KPQRTGEVSLPWSLTLETTLPSVMPNIMAQGDGQSITCRVTVDDEVKDER
MMAR_3049|M.marinum_M EPEEADFSTLPWTRTITTTIPAIIANIVAQGNSDSIGCRITVNGDVKDEQ
MUL_2293|M.ulcerans_Agy99 EPEEADFSTLPWTRTITTTIPAIIANIVAQGNSDSIGCRITVNGDVKDEQ
MAB_4769c|M.abscessus_ATCC_199 HPHQENVTTLPWSHTETTTLTVVSGSISVQVRGGQVGCRIRVNDVVRDQM
MAV_3953|M.avium_104 HPHQVDITTLPWTHTESTTLSVASGSISVHVHGGQVGCRMLVNDVVRDEQ
MSMEG_3585|M.smegmatis_MC2_155 HPHRVDIAELPWSHTETTTLTVVSGSISGQVKGGEVGCRILVNDRVRDEH
*.. :**: *. . .: : : **: : :. :
MLBr_02377|M.leprae_Br4923 VSNEVNAYTYCLVKSA
TH_2866|M.thermoresistible__bu TTQRVSAYVYCFTKSA
Mb0410c|M.bovis_AF2122/97 IVNAYHAHTSCLVKSA
Rv0403c|M.tuberculosis_H37Rv IVNAYHAHTSCLVKSA
Mflv_3028|M.gilvum_PYR-GCK TAEGVNAATYCLVKAA
Mvan_1058|M.vanbaalenii_PYR-1 TAEGLNAATYCLVKAA
MMAR_3049|M.marinum_M SAQGHHAQTFCLVKAA
MUL_2293|M.ulcerans_Agy99 SAQGHHAQTFCLVKAA
MAB_4769c|M.abscessus_ATCC_199 SDDHADANVMCRVKSA
MAV_3953|M.avium_104 SGNHQDADVQCRVKSA
MSMEG_3585|M.smegmatis_MC2_155 SSSHANADVTCRVKSA
. * . * .*:*