For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VAAPRKFDQETRERAVRMYEDRIAEFGGSKREARRHVGELLGINEATLRNWVENRHGSGRPAAGAVMSSA GDKDAELAALRKENAELRRANEILKTASAFFAAAEVDRRLR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_1728 | - | - | 100% (111) | ISMsm1, transposase orfA |
| M. smegmatis MC2 155 | MSMEG_5096 | - | 2e-58 | 100.00% (111) | ISMsm1, transposase orfA |
| M. smegmatis MC2 155 | MSMEG_2819 | - | 2e-58 | 100.00% (111) | ISMsm1, transposase orfA |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2839c | - | 2e-15 | 48.65% (111) | transposase |
| M. gilvum PYR-GCK | Mflv_0600 | - | 3e-08 | 34.29% (105) | Fis family transcriptional regulator |
| M. tuberculosis H37Rv | Rv3474 | - | 2e-15 | 48.65% (111) | transposase IS6110 |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_2547 | - | 3e-12 | 38.74% (111) | transposase, ISMyma03_aa1 |
| M. avium 104 | MAV_5035 | - | 6e-09 | 35.24% (105) | ISAfe7, transposase OrfA |
| M. thermoresistible (build 8) | TH_1992 | - | 4e-15 | 41.12% (107) | POSSIBLE TRANSPOSASE FOR INSERTION ELEMENT IS6110 |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_5972 | - | 2e-09 | 37.14% (105) | transposase IS3/IS911 family protein |
CLUSTAL 2.0.9 multiple sequence alignment
Mb2839c|M.bovis_AF2122/97 -----------------------------------------MSGGSSRRY
Rv3474|M.tuberculosis_H37Rv -----------------------------------------MSGGSSRRY
MMAR_2547|M.marinum_M -----------------------------------------MARAS--KY
TH_1992|M.thermoresistible__bu VLAKLIWQQHWGTWLKFGRADKLFTRLRAARLDHTVEAEIRRLAAVDXKY
MAV_5035|M.avium_104 -----------------------------------MPKEQSPGKPTTRRY
Mvan_5972|M.vanbaalenii_PYR-1 -----------------------------------MPKEQSVGKPTTRRY
Mflv_0600|M.gilvum_PYR-GCK -----------------------------------MPKEQSPGKPTTRRY
MSMEG_1728|M.smegmatis_MC2_155 -------------------------------------------MAAPRKF
::
Mb2839c|M.bovis_AF2122/97 PPELRERAVRMVAEIRGQHD-SEWAAISEVARLLGVGCAETVRKWVR---
Rv3474|M.tuberculosis_H37Rv PPELRERAVRMVAEIRGQHD-SEWAAISEVARLLGVGCAETVRKWVR---
MMAR_2547|M.marinum_M PEELRERAVRMVAEIAPQYG-SQWAAICAVAGKLGVGTPETVRTWVR---
TH_1992|M.thermoresistible__bu SPEFRDRALRLLDTTMEDSGVSEFEAIKSVASKLGV-SQESVRRWRR---
MAV_5035|M.avium_104 SAEEKAAAVRMVRTLRAELG-TEQGTVQRVARQLGY-GVESVRTWVR---
Mvan_5972|M.vanbaalenii_PYR-1 SAEEKAAAVRMVRALRAELG-IAQGTVQRVATQLGY-GVESVRTWVR---
Mflv_0600|M.gilvum_PYR-GCK SSEEKAAAVRMVRTLREELG-TEQGTVTRVAHQLGY-GVESVRSWVR---
MSMEG_1728|M.smegmatis_MC2_155 DQETRERAVRMYEDRIAEFGGSKREARRHVGELLGI-NEATLRNWVENRH
* : *:*: : . : *. ** ::* * .
Mb2839c|M.bovis_AF2122/97 -QAQVDAGARPGTTTEESAELKRLRRDNAELRRANAILKTASAFFA-AEL
Rv3474|M.tuberculosis_H37Rv -QAQVDAGARPGTTTEESAELKRLRRDNAELRRANAILKTASAFFA-AEL
MMAR_2547|M.marinum_M -RAEVDAGQRPGVSSEQSEELRRLKRENAELRRANEILKAAAIFFG-AEL
TH_1992|M.thermoresistible__bu -KAEIDAGQRPGVTSTEHAEIRKLKRENAELRRANEILKSASAFFA-AEL
MAV_5035|M.avium_104 -QADIDEGLAPGVTTAESKRVQELEQENRELKRANEILKRAASFFG-AEL
Mvan_5972|M.vanbaalenii_PYR-1 -QADIDEGVAPGVTTAESTRLKALEQENRELERANEILKRAASFFG-AEL
Mflv_0600|M.gilvum_PYR-GCK -QADIDDGHAPGVTSTESAKVKELEQEIRELKRANEILKRAASFFG-AEL
MSMEG_1728|M.smegmatis_MC2_155 GSGRPAAGAVMSSAGDKDAELAALRKENAELRRANEILKTASAFFAAAEV
. * . : : .: *.:: **.*** *** *: **. **:
Mb2839c|M.bovis_AF2122/97 DRPAR-
Rv3474|M.tuberculosis_H37Rv DRPAR-
MMAR_2547|M.marinum_M DRPARR
TH_1992|M.thermoresistible__bu DRPATK
MAV_5035|M.avium_104 DRQHKK
Mvan_5972|M.vanbaalenii_PYR-1 DRQHKR
Mflv_0600|M.gilvum_PYR-GCK DRQHKK
MSMEG_1728|M.smegmatis_MC2_155 DRRLR-
**