For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VAHIASRGPGRPPAAKAAETRERILSAAREVFSELGYDAATFQAIAIRADLTRPAINHYFGSKRVLYREV VEQTNATVIAAGVARAREATSLLGRLSAFFAAAMDAESADRSSAAFLVTSVLESQRHPDLVSEEQDALLN SRKFVAWAVNDAIERGELTTDTDIPAIVEMLVAVMWGMGFYAGYVGRSEELAAIVDKFEMLMANKLWQLR D
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_0092 | - | - | 100% (211) | transcriptional regulatory protein |
| M. smegmatis MC2 155 | MSMEG_3177 | - | 3e-27 | 37.70% (183) | transcriptional regulatory protein, putative |
| M. smegmatis MC2 155 | MSMEG_1565 | - | 3e-16 | 26.24% (202) | transcriptional regulator, TetR family protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0149 | - | 6e-68 | 60.29% (204) | TetR family transcriptional regulator |
| M. gilvum PYR-GCK | Mflv_0744 | - | 4e-84 | 72.51% (211) | TetR family transcriptional regulator |
| M. tuberculosis H37Rv | Rv0144 | - | 6e-68 | 60.29% (204) | TetR family transcriptional regulator |
| M. leprae Br4923 | MLBr_00815 | - | 2e-06 | 32.94% (85) | putative TetR-family transcriptional regulator |
| M. abscessus ATCC 19977 | MAB_1149 | - | 4e-09 | 35.62% (73) | TetR family transcriptional regulator |
| M. marinum M | MMAR_0355 | - | 1e-61 | 56.80% (206) | TetR family transcriptional regulator |
| M. avium 104 | MAV_5151 | - | 1e-58 | 54.19% (203) | transcriptional regulator, TetR family protein |
| M. thermoresistible (build 8) | TH_1278 | - | 9e-58 | 72.60% (146) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY |
| M. ulcerans Agy99 | MUL_4765 | - | 8e-62 | 56.80% (206) | TetR family transcriptional regulator |
| M. vanbaalenii PYR-1 | Mvan_0103 | - | 3e-70 | 68.31% (183) | TetR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
MSMEG_0092|M.smegmatis_MC2_155 --------------------------------------------------
TH_1278|M.thermoresistible__bu --------------------------------------------------
Mflv_0744|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_0103|M.vanbaalenii_PYR-1 --------------------------------------------------
Mb0149|M.bovis_AF2122/97 MPHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSV
Rv0144|M.tuberculosis_H37Rv MPHSWTPTSVMTPPLVVAAFRPVGHYRLATDRAGGPCSPPATGAKLTSSV
MMAR_0355|M.marinum_M --------------------------------------------------
MUL_4765|M.ulcerans_Agy99 --------------------------------------------------
MAV_5151|M.avium_104 --------------------------------------------------
MLBr_00815|M.leprae_Br4923 -------------------------------------------------M
MAB_1149|M.abscessus_ATCC_1997 --------------------------------------------------
MSMEG_0092|M.smegmatis_MC2_155 -------------------MAHIASRGPGRPP--AAKAAETRERILSAAR
TH_1278|M.thermoresistible__bu --------------------------------------------------
Mflv_0744|M.gilvum_PYR-GCK -------------MWHNFNVPYTASRGPGRPP--AAKAAETRERILRAAR
Mvan_0103|M.vanbaalenii_PYR-1 ---------------------------------------------MRAAR
Mb0149|M.bovis_AF2122/97 ASRPTVGTKPQWWHTLVMSMSLTAGRGPGRPP--AAKADETRKRILHAAR
Rv0144|M.tuberculosis_H37Rv ASRPTVGTKPQWWHTLVMSMSLTAGRGPGRPP--AAKADETRKRILHAAR
MMAR_0355|M.marinum_M -------------------MQLTASRGPGRPP--AAKADDTRRRIVGAAR
MUL_4765|M.ulcerans_Agy99 ------------------MMQLTASRGPGRPP--AAKADDTRRRIVGAAR
MAV_5151|M.avium_104 -------------------MLPRGNRRPGRPP--AAKADETRQRIIQAAR
MLBr_00815|M.leprae_Br4923 NNLAKAAQRRTVRPIDRGRLSDDIATPNQRSN--RLSRDKRRGQLLIVAS
MAB_1149|M.abscessus_ATCC_1997 ------------------MAVPSRPDVPGRTPRVRMAGSERRRQLIDVAR
MSMEG_0092|M.smegmatis_MC2_155 EVFSELGYDAATFQAIAIRADLTRPAINHYFGSKRVLYREVVEQTNATVI
TH_1278|M.thermoresistible__bu -----------------------------------VLYQEVVQQTNSLVV
Mflv_0744|M.gilvum_PYR-GCK EVFSELGYDAATFQAIAIRADLTRPAINHYFASKGVLWAEVVEQTNATIV
Mvan_0103|M.vanbaalenii_PYR-1 EIFSELGYDAATFQAIAVRADLTRPAINHYFSSKRVLWAEVVEQTYASVV
Mb0149|M.bovis_AF2122/97 QVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVI
Rv0144|M.tuberculosis_H37Rv QVFSERGYDGATFQEIAVRADLTRPAINHYFANKRVLYQEVVEQTHELVI
MMAR_0355|M.marinum_M EVFSERGYDGATFQAIAVSADLTRPAINHYFASKQALYREVVVQTNELVV
MUL_4765|M.ulcerans_Agy99 EVFSERGYDGATFQAIAVSADLTRPAINHYFASKQALYREVVVQTNELVV
MAV_5151|M.avium_104 LVFSERGYDGATFQAIAARADLTRPAINHYFSSKRALYQEVMDETNEFVI
MLBr_00815|M.leprae_Br4923 DVFVDHGYHAAGMDEIADRAGVSKPVLYQHFSSKLELYLAVLERHMNNLV
MAB_1149|M.abscessus_ATCC_1997 SLFAERGYEATSIEEIAQRAGVSKPVVYEHFGGKEGLYAVVVDREMSVLL
*: *: . ::
MSMEG_0092|M.smegmatis_MC2_155 AAGVARAREATSLLGRLSAFFAAAMDAESADRSSAAFLVTSVLESQRHPD
TH_1278|M.thermoresistible__bu AEGMERAKRETTLLGRLSAFFTAAMQAESEDRSTAAFLVISVLESQRHPE
Mflv_0744|M.gilvum_PYR-GCK SEAIARAHEHTSLIERLSAFLTVATQAESDDRSAAAFLVTSVLESQRHPE
Mvan_0103|M.vanbaalenii_PYR-1 GVGIARAHEQTSLLNRLMAFLSVATQVDTDDRSAAAFLVTSVLESQRHPE
Mb0149|M.bovis_AF2122/97 VAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPE
Rv0144|M.tuberculosis_H37Rv VAGIERARREPTLMGRLAVVVDFAMEADAQYPASTAFLATTVLESQRHPE
MMAR_0355|M.marinum_M AAGVERARSVQTLLGQLCTFVMVAKEADASHPATTAFLATAVLESQRHPE
MUL_4765|M.ulcerans_Agy99 AAGVERARSVQTLLGQLCTFVMVAKEADASHPATTAFLATAVLESQRHPE
MAV_5151|M.avium_104 GVGIKEADRETTLVGRLTAFISAAVKANAENPAGSAFIIGGVLESQRHPE
MLBr_00815|M.leprae_Br4923 SSVQQALRTTTNNRQRLHAAVQAFFDFIEHDGQGYRLIFE--NDNITEPR
MAB_1149|M.abscessus_ATCC_1997 DGITSSLTSYRS-RVRLEQVALALLSYIEERTDGFRILIRDSPPGVSSGT
. :* . :: .
MSMEG_0092|M.smegmatis_MC2_155 LVSEEQDALLNSRKFVAWAVNDAIERGELTTDTDIPAIVEMLVAVMWGMG
TH_1278|M.thermoresistible__bu LTIDEFDALKNSRAFVTWAVNDAIERGELTTNTDVSKIVEMLVAVLWGMG
Mflv_0744|M.gilvum_PYR-GCK LINDEHDSLKNSRRFVSAAVSDAIERGELSADTDVTHLVEMLVAVVWGMG
Mvan_0103|M.vanbaalenii_PYR-1 LADDDHDSLTNSRAFVSWAVNDAVARGELSADTDVNHLVEMLVAVVWGMG
Mb0149|M.bovis_AF2122/97 LSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVG
Rv0144|M.tuberculosis_H37Rv LSRTENDAVRATREFLVWAVNDAIERGELAADVDVSSLAETLLVVLCGVG
MMAR_0355|M.marinum_M LRRSDHDAVAATREFLDTAVRDAIQRGELEAGVDASQLAEALLLLLCGVG
MUL_4765|M.ulcerans_Agy99 LRRSDHDAVAATREFLDTAVRDAIQRGELEAGVDASQLAEALLLLLCGVG
MAV_5151|M.avium_104 WNTAENDSVRIAREFLIRVVNDAIEHGEVAADIDASALVETLLVVMCGVG
MLBr_00815|M.leprae_Br4923 VAAQVRVATESCIDAVFALISADSRLDPHRARMVAVGLVGISVDCAR---
MAB_1149|M.abscessus_ATCC_1997 YSSLLNDAVS----QVSSILAGDFQRRGLDAEMAPLYAQALVGQVSMTAQ
: : : :
MSMEG_0092|M.smegmatis_MC2_155 FYAGYVGRSEELAAIVDKFEMLMANKLWQLRD------
TH_1278|M.thermoresistible__bu FYAGYVGRQEDLKTVVEQFELLLANKLWQLKS------
Mflv_0744|M.gilvum_PYR-GCK FYAGFVGDRSDLSAVVHKLELLLAGKLWNVAD------
Mvan_0103|M.vanbaalenii_PYR-1 FYAGFVGDRSDFGAVMHKLELLLANKLWNLGE------
Mb0149|M.bovis_AF2122/97 FYIGFVGSYQRMATITDSFQQLLAGTLWRPPT------
Rv0144|M.tuberculosis_H37Rv FYIGFVGSYQRMATITDSFQQLLAGTLWRPPT------
MMAR_0355|M.marinum_M FYAGFVGSYRDMENILDTLCKMMAGTLWKPRS------
MUL_4765|M.ulcerans_Agy99 FYAGFVGSYRDMENILDTLCKMMAGTLWKPRS------
MAV_5151|M.avium_104 LYAGYVETYQEMLAVTGMLRQLLEGALWRPGS------
MLBr_00815|M.leprae_Br4923 YWLDTNRPISKSDAVEGTVQFAWGGLSHVPLTRL----
MAB_1149|M.abscessus_ATCC_1997 WWLDAREP-KKEVVAAHIVNLCWHGLKHLEADPQLHEE
: . . .