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ELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRLLVRLAGVTD RDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQRVGAVAEVLHTAAGELLAVRDDADGA PREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. avium 104 | MAV_3762 | rimM | - | 100% (175) | 16S rRNA-processing protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2931c | rimM | 2e-66 | 72.07% (179) | 16S rRNA-processing protein RimM |
| M. gilvum PYR-GCK | Mflv_4173 | rimM | 2e-63 | 69.71% (175) | 16S rRNA-processing protein |
| M. tuberculosis H37Rv | Rv2907c | rimM | 2e-66 | 72.07% (179) | 16S rRNA-processing protein RimM |
| M. leprae Br4923 | MLBr_01616 | rimM | 4e-71 | 77.27% (176) | 16S rRNA-processing protein RimM |
| M. abscessus ATCC 19977 | MAB_3227c | rimM | 6e-60 | 63.43% (175) | 16S rRNA-processing protein RimM |
| M. marinum M | MMAR_1801 | rimM | 2e-68 | 74.43% (176) | 16S rRNA processing protein RimM |
| M. smegmatis MC2 155 | MSMEG_2437 | rimM | 2e-61 | 68.00% (175) | 16S rRNA-processing protein |
| M. thermoresistible (build 8) | TH_2388 | rimM | 1e-63 | 68.75% (176) | PROBABLE 16S RRNA PROCESSING PROTEIN RIMM |
| M. ulcerans Agy99 | MUL_2049 | rimM | 4e-68 | 73.86% (176) | 16S rRNA-processing protein RimM |
| M. vanbaalenii PYR-1 | Mvan_2189 | rimM | 1e-66 | 72.00% (175) | 16S rRNA-processing protein |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_4173|M.gilvum_PYR-GCK -------MDLVVGRVAKAHGVTGELTVEVRTDDPQGRFVRGAVLRGRPPR
Mvan_2189|M.vanbaalenii_PYR-1 -------MDLVVGRVVKAHGVTGELAVDVRTDDPEGRFVAGAVLRGRPAR
MAB_3227c|M.abscessus_ATCC_199 -------MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPR
MSMEG_2437|M.smegmatis_MC2_155 -------MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGR-PR
TH_2388|M.thermoresistible__bu -------MDLVVGRVVKAHGITGEVVVEVRTDDPDSRFAPGVRLRGRPGR
Mb2931c|M.bovis_AF2122/97 -------MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPF
Rv2907c|M.tuberculosis_H37Rv -------MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPF
MMAR_1801|M.marinum_M -------MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSR
MUL_2049|M.ulcerans_Agy99 -------MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSR
MLBr_01616|M.leprae_Br4923 MHAHGALLELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFP
MAV_3762|M.avium_104 -------MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAK-PS
::*.:**:.::**: **: *::***:* ** * * .:
Mflv_4173|M.gilvum_PYR-GCK GGA-E---REYVIESVRTHGDRLLVRFDGVADRDAADALRGTVFLVDSAD
Mvan_2189|M.vanbaalenii_PYR-1 GGA-E---REFVIESVRSHGDRMLIRLQGVGDRDAADALRGTLFLVDSAE
MAB_3227c|M.abscessus_ATCC_199 GGG-S---RRFTVESVREHSGRLLIRFAGVSDRDAADALRGTLFMVDTTD
MSMEG_2437|M.smegmatis_MC2_155 SGA-E---REYTIESVRAHGGRLLVRLAGVADRNGADELRGTVFLVDTAE
TH_2388|M.thermoresistible__bu GDGPE---REFVVESSRPHSGRLLVRLAGIEDRTAAEALRGILFVIDSAD
Mb2931c|M.bovis_AF2122/97 DGGAEGSAVSYVIESVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADD
Rv2907c|M.tuberculosis_H37Rv DGGAEGSAVSYVIESVRQHGGRLLVRLAGVADRDAADALRGSLFVIDADD
MMAR_1801|M.marinum_M DGGTG---RNYVIEGVREHGARLLVRLAGVNDRDTADGLRGSLFVIDSAD
MUL_2049|M.ulcerans_Agy99 DGGTG---RNYVIEGVREHGARLLVRLAGVNDRDTADGLRGSLFVIDSAD
MLBr_01616|M.leprae_Br4923 RGGPE---RRYTVVYAREHGARLLVRLAGVSDRDAADALRGSLFVIDSLD
MAV_3762|M.avium_104 RGGPE---RSCVIESAREHGGRLLVRLAGVTDRDAADALRGTLFVVDSAE
.. .: * *. *:*:*: *: ** *: *** :*::*: :
Mflv_4173|M.gilvum_PYR-GCK LPPIEDPDEFYDHQLEGLTVITTSGGEVGKVAEVLHTAAGELLAVRTADD
Mvan_2189|M.vanbaalenii_PYR-1 LPPIEDPDEFYDHQLEGMAVSTTGGQPVGTVAEVLHTAAGELLAVRDPDG
MAB_3227c|M.abscessus_ATCC_199 LPPIEDPDEFYDHQLEGLAVRTLDGAAVGTVSEVLHTPGGELLSVRGSER
MSMEG_2437|M.smegmatis_MC2_155 LPAIDDPDEFYDHELEGMRVVTVDDAPVGKVAEVLHTAGGEILAVKADEG
TH_2388|M.thermoresistible__bu LPPIEDPDEFYDHQLEGLRVRTVDGREVGTVSEVLHTAAGELLAVRAGER
Mb2931c|M.bovis_AF2122/97 LPPIDEPDTYYDHQLVGLMVQTATGEGVGVVTEVVHTAAGELLAVKRDSD
Rv2907c|M.tuberculosis_H37Rv LPPIDEPDTYYDHQLVGLMVQTATGEGVGVVTEVVHTAAGELLAVKRDSD
MMAR_1801|M.marinum_M LPPIDEPDTYYDHQLEGLRVRTTAGQDVGVVAEVLHTGAGELLAVKCDSG
MUL_2049|M.ulcerans_Agy99 LPPIEEPDTYYDHQLEGLRVRTTAGQDVGVVAEVLHTGAGELLAVKCDSG
MLBr_01616|M.leprae_Br4923 LPPIDEPDTYYDHQLEGLQVRTMMGRDVGVVAEVLHTAAGELLAVRCDSG
MAV_3762|M.avium_104 LPDIDEPDTYYDHQLEGLQVRTTGGQRVGAVAEVLHTAAGELLAVRDDAD
** *::** :***:* *: * * . ** *:**:** .**:*:*:
Mflv_4173|M.gilvum_PYR-GCK ---TEVLVPFVSAIVLSVSLDDQLITIDPPDGLLELD-
Mvan_2189|M.vanbaalenii_PYR-1 ---AEVLVPFVSAIVVSVSLADNAIEIDPPEGLLDL--
MAB_3227c|M.abscessus_ATCC_199 ---REILVPFVSAIVTSISLADKVIEIDPPEGLLDLS-
MSMEG_2437|M.smegmatis_MC2_155 G--REILVPFVGAIVTSVSRQNATIVIDPPEGLLDLA-
TH_2388|M.thermoresistible__bu ----EVLVPFVREIVPTVSLKERTIEIDPPDGLLELG-
Mb2931c|M.bovis_AF2122/97 ----EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE-
Rv2907c|M.tuberculosis_H37Rv ----EVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE-
MMAR_1801|M.marinum_M ----EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS
MUL_2049|M.ulcerans_Agy99 ----EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS
MLBr_01616|M.leprae_Br4923 ----EVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL--
MAV_3762|M.avium_104 GAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL--
*:***** ** :* : : ****.***:*