For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
IRPPFGVRLLLGVAATVLEETRKLPQAVLTYPMTAASQTVQNFMRFQQTVTELAIKGDEAWENIFPPTEE QPEWATFDEDLDELDAPEHDETQATAVYEDAAERMTQGRFALYSSEPAAPETESAPATEPETAAEKAAPR KAPAKKAAAKKAPAKKAAPAVPAESADPNAPDVVTELGYHDLTLAQLRARLQLLSVGELEELLAYEDAHK ARAPYQTLLANRITRAAARG*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. abscessus ATCC 19977 | MAB_1256c | - | - | 100% (231) | hypothetical protein MAB_1256c |
| M. abscessus ATCC 19977 | MAB_4083c | - | 2e-06 | 47.95% (73) | Heparin-binding hemagglutinin (adhesin) |
| M. abscessus ATCC 19977 | MAB_3009 | - | 2e-06 | 45.45% (77) | RNA polymerase sigma factor |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1139c | - | 1e-49 | 51.28% (234) | hypothetical protein Mb1139c |
| M. gilvum PYR-GCK | Mflv_2078 | - | 4e-50 | 49.37% (237) | hypothetical protein Mflv_2078 |
| M. tuberculosis H37Rv | Rv1109c | - | 1e-49 | 51.28% (234) | hypothetical protein Rv1109c |
| M. leprae Br4923 | MLBr_01939 | - | 8e-42 | 45.69% (232) | hypothetical protein MLBr_01939 |
| M. marinum M | MMAR_4356 | - | 2e-48 | 50.00% (232) | hypothetical protein MMAR_4356 |
| M. avium 104 | MAV_1229 | - | 8e-49 | 49.57% (230) | hypothetical protein MAV_1229 |
| M. smegmatis MC2 155 | MSMEG_5225 | - | 4e-53 | 51.54% (227) | hypothetical protein MSMEG_5225 |
| M. thermoresistible (build 8) | TH_1704 | - | 2e-52 | 52.94% (221) | CONSERVED HYPOTHETICAL PROTEIN |
| M. ulcerans Agy99 | MUL_0169 | - | 1e-48 | 50.00% (232) | hypothetical protein MUL_0169 |
| M. vanbaalenii PYR-1 | Mvan_4632 | - | 3e-52 | 49.13% (230) | hypothetical protein Mvan_4632 |
CLUSTAL 2.0.9 multiple sequence alignment
Mb1139c|M.bovis_AF2122/97 MATAPYGVRLLVGAATVAVEETMKLPRTILMYPMTLASQAAHVVMRFQQG
Rv1109c|M.tuberculosis_H37Rv MATAPYGVRLLVGAATVAVEETMKLPRTILMYPMTLASQAAHVVMRFQQG
MLBr_01939|M.leprae_Br4923 MATAPYGVRLLVGAATVAVEETLKLPRTVLMCPMTLASQVAHIVMRFQQN
MMAR_4356|M.marinum_M MATAPYGVRLIVGAATVAVEETMKLPRTILMYPMTLASQAAHLVMLFQQN
MUL_0169|M.ulcerans_Agy99 MATAPYGVRLIVGAATVAVEETMKLPRTILMYPMTLASQAAHLVMLFQQN
MAV_1229|M.avium_104 MATAPYGVRLLVGAATVAVEETMRLPKTILMYPMTLASQAAHIVMRFQQN
Mflv_2078|M.gilvum_PYR-GCK MSTAPYGVRLLVGAAVTAIEETRKLPQTILMYPMTVASQIAQLVMKMQQD
Mvan_4632|M.vanbaalenii_PYR-1 MSTAPYGVRLLVGAAVTAIEETRKLPQTILMYPMTIASQLAQLVMKMQQD
MSMEG_5225|M.smegmatis_MC2_155 MGTAPYGVRLLVGAAVTTLEEARKLPQTILTYPMTMASQAANLVMHVQQN
TH_1704|M.thermoresistible__bu ---------LLLGVAVTALEETRKLPHTILTYPMTVASTAAHIVMRVQQN
MAB_1256c|M.abscessus_ATCC_199 MIRPPFGVRLLLGVAATVLEETRKLPQAVLTYPMTAASQTVQNFMRFQQT
*::*.*...:**: :**:::* *** ** .: .* .**
Mb1139c|M.bovis_AF2122/97 LAELVIKGDNTLETLFPPKDEKPEWATFDEDLPDALEGTSIPLLGLSDAS
Rv1109c|M.tuberculosis_H37Rv LAELVIKGDNTLETLFPPKDEKPEWATFDEDLPDALEGTSIPLLGLSDAS
MLBr_01939|M.leprae_Br4923 LAGLVTKGDGTLETLFPAKSEQPEWATFDEDLTDTVDETPTPLP----VG
MMAR_4356|M.marinum_M LAELVIKGDSTLESLFPPKDEQAAWATFDEDLPDDANALEGSAT---ALA
MUL_0169|M.ulcerans_Agy99 LAELVIKGDSTLESLFPPKDEQAAWATFDEDLPDDANALEGSAT---ALA
MAV_1229|M.avium_104 LAELVIKGDSTLESIFPPKDEKPEWATFDEDIDDAADGYANPAD------
Mflv_2078|M.gilvum_PYR-GCK VAVLVIKGDETLESIFPPKDEQPEWATFDEDSGSDRESDDGGDVGDVVEL
Mvan_4632|M.vanbaalenii_PYR-1 VAVLVIKGDETLESIFPPKDEQPEWATFDEDLP--------GDDGEVGAA
MSMEG_5225|M.smegmatis_MC2_155 LAELVIKGDEALEQLFPPKDEQPEWATFDEDLQDSGDDDTAGDS---AST
TH_1704|M.thermoresistible__bu VAELVIKGDEALEQLFPPTEEQPEWATFDEDLDDGSDD------------
MAB_1256c|M.abscessus_ATCC_199 VTELAIKGDEAWENIFPPTEEQPEWATFDEDLDELDAPEHDETQ--ATAV
:: *. *** : * :**...*:. *******
Mb1139c|M.bovis_AF2122/97 EAKNDDRRSDGRFALYS--------------------VSDTPETTTASRS
Rv1109c|M.tuberculosis_H37Rv EAKNDDRRSDGRFALYS--------------------VSDTPETTTASRS
MLBr_01939|M.leprae_Br4923 DVIEIDCRSEERFALYS--------------------VSDTSEPEDAD-S
MMAR_4356|M.marinum_M DSMDADRRTEGRFALYS--------------------VSDPAESRETS-S
MUL_0169|M.ulcerans_Agy99 DSMDADRRTEGRFALYS--------------------VSDPAESRETS-S
MAV_1229|M.avium_104 -GSEGERRAEGRFALYS--------------------VADAHD--DAS-A
Mflv_2078|M.gilvum_PYR-GCK PVRDGERLTEGRFALFS--------------------GDFNGDPDVPKTD
Mvan_4632|M.vanbaalenii_PYR-1 AARDGERLTEGRFALFS--------------------GEADAARASASDD
MSMEG_5225|M.smegmatis_MC2_155 SSANGQRRTEGRFALYST------------------GTPDSAESEPAARS
TH_1704|M.thermoresistible__bu ---DGERRRPGRFALYS----------------------TGAPERQANGA
MAB_1256c|M.abscessus_ATCC_199 YEDAAERMTQGRFALYSSEPAAPETESAPATEPETAAEKAAPRKAPAKKA
: ****:* .
Mb1139c|M.bovis_AF2122/97 ADRSTNPKTAKHPKSAAKPTVPTPAVAAELDYPALTLAQLRARLHTLDVP
Rv1109c|M.tuberculosis_H37Rv ADRSTNPKTAKHPKSAAKPTVPTPAVAAELDYPALTLAQLRARLHTLDVP
MLBr_01939|M.leprae_Br4923 LTQSMPTRHVK--KAAAKLMVHAPEVADDIDYPALTLAQLRGKLQSLDLG
MMAR_4356|M.marinum_M PVRKAPARQPK---SAAKPSTEIPAVAGKLDYASLTLAQLRARLASLSVE
MUL_0169|M.ulcerans_Agy99 PVRKAPARQPK---SAAKPSTEIPAVAGKLDYASLTLAQLRARLASLSVE
MAV_1229|M.avium_104 LTRSARP-SAK---PAAEASVPTPAVVTELDYSALTLAQLRARLQSLSVD
Mflv_2078|M.gilvum_PYR-GCK TPAETPAASAD-----------APEIVSEIEYESLTLAQLRARLTSLRVP
Mvan_4632|M.vanbaalenii_PYR-1 TSAPSTAASPD-----------APEIVAEIEYESLTLAQLRARLTSLRLA
MSMEG_5225|M.smegmatis_MC2_155 SKSSEPSKPSE------PETGEAPAVVAEMDYDSLTLAQLRARLTSLSIG
TH_1704|M.thermoresistible__bu NGAAEPAAPAE-----------PPEIATELGYDSLTLAQLRARLPSLKVG
MAB_1256c|M.abscessus_ATCC_199 AAKKAPAKKAAPAVPAESADPNAPDVVTELGYHDLTLAQLRARLQLLSVG
. * :. .: * *******.:* * :
Mb1139c|M.bovis_AF2122/97 ELEALLAYEQATKARAPFQTLLANRITRATAK-
Rv1109c|M.tuberculosis_H37Rv ELEALLAYEQATKARAPFQTLLANRITRATAK-
MLBr_01939|M.leprae_Br4923 ELEALLVYEQATKARAPFQTLLANRITSTTAK-
MMAR_4356|M.marinum_M DLEALLAYEQATKARAPFQTLLANRITRATAK-
MUL_0169|M.ulcerans_Agy99 DLEALLAYEQATKARAPFQTLLANRITRATAK-
MAV_1229|M.avium_104 ELEALLAYEQATKGRAPFQTLLANRITRANAK-
Mflv_2078|M.gilvum_PYR-GCK DLEALLAYEESTKARAPYQTLLANRITRASAK-
Mvan_4632|M.vanbaalenii_PYR-1 DLEALLSYEESTKARAPYQTLLANRITRASAK-
MSMEG_5225|M.smegmatis_MC2_155 DLEALLAYEEAGRARAPFVTLLANRITRASAK-
TH_1704|M.thermoresistible__bu DLEALLAYEEATRARAPFQTLLANRITRASAK-
MAB_1256c|M.abscessus_ATCC_199 ELEELLAYEDAHKARAPYQTLLANRITRAAARG
:** ** **:: :.***: ******** : *: