#Console: python ../../../transit/src/transit.py zinb iron_combined_wig4.txt iron_samples_metadata.txt H37Rv.prot_table zinb_iron.txt
#parameters: normalization=TTR, trimming=5.0/5.0% (N/C), pseudocounts=5.0
#Rv	Gene	TAs	Mean_HighFeMBT	Mean_LowFeMBT	Mean_FeCMBT	Mean_Hemin	Mean_Hemoglobin	Mean_HeminMBT	LFC_HighFeMBT	LFC_LowFeMBT	LFC_FeCMBT	LFC_Hemin	LFC_Hemoglobin	LFC_HeminMBT	NZmean_HighFeMBT	NZmean_LowFeMBT	NZmean_FeCMBT	NZmean_Hemin	NZmean_Hemoglobin	NZmean_HeminMBT	NZperc_HighFeMBT	NZperc_LowFeMBT	NZperc_FeCMBT	NZperc_Hemin	NZperc_Hemoglobin	NZperc_HeminMBT	pval	padj	status
Rv0001	dnaA	29	0.0	0.0	0.0	0.1	0.2	0.0	-0.015	-0.015	-0.015	0.028	0.030	-0.015	0.0	0.0	0.0	13.0	9.0	0.0	0.00	0.00	0.00	0.01	0.02	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0002	dnaN	27	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0003	recF	33	58.6	53.7	59.7	60.6	52.5	60.1	0.025	-0.090	0.048	0.069	-0.122	0.059	76.3	66.9	74.3	73.2	60.8	69.6	0.77	0.80	0.80	0.83	0.86	0.86	0.973754	1.000000	-
Rv0004	-	5	0.0	1.0	1.3	1.7	0.9	1.1	-0.262	0.001	0.063	0.166	-0.023	0.020	0.0	10.0	12.6	25.9	9.0	10.8	0.00	0.10	0.10	0.07	0.10	0.10	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0005	gyrB	38	0.2	0.1	0.0	0.0	0.0	0.0	0.040	0.023	-0.016	-0.016	-0.016	-0.016	22.6	10.4	0.0	0.0	0.0	0.0	0.01	0.01	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0006	gyrA	42	0.0	0.1	0.0	0.0	0.0	0.0	-0.006	0.029	-0.006	-0.006	-0.006	-0.006	0.0	10.4	0.0	0.0	0.0	0.0	0.00	0.01	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0007	-	10	142.7	223.2	159.9	217.6	263.5	142.3	-0.412	0.216	-0.253	0.179	0.450	-0.416	142.7	223.2	159.9	233.1	263.5	142.3	1.00	1.00	1.00	0.93	1.00	1.00	0.001536	0.028765	-
Rv0008c	-	4	37.2	34.5	37.6	32.9	30.2	39.2	0.067	-0.028	0.081	-0.086	-0.193	0.133	55.8	46.0	50.1	43.9	34.5	52.2	0.67	0.75	0.75	0.75	0.88	0.75	0.965802	1.000000	-
Rv0009	ppiA	6	103.4	145.2	135.0	164.1	165.1	125.2	-0.416	0.054	-0.048	0.225	0.234	-0.152	124.1	145.2	147.2	164.1	165.1	150.2	0.83	1.00	0.92	1.00	1.00	0.83	0.279021	1.000000	-
Rv0010c	-	9	179.5	205.5	138.0	144.1	163.4	178.2	0.092	0.282	-0.275	-0.215	-0.040	0.082	242.3	264.2	191.1	185.3	210.0	246.7	0.74	0.78	0.72	0.78	0.78	0.72	0.994611	1.000000	-
Rv0011c	-	3	27.4	39.1	11.5	64.6	65.9	38.5	-0.508	-0.065	-1.487	0.592	0.619	-0.087	30.9	39.1	22.9	64.6	65.9	38.5	0.89	1.00	0.50	1.00	1.00	1.00	0.009317	0.132298	-
Rv0012	-	14	81.2	124.2	89.4	78.0	75.9	84.0	-0.122	0.462	0.009	-0.176	-0.213	-0.076	87.4	124.2	92.7	88.6	92.4	94.1	0.93	1.00	0.96	0.88	0.82	0.89	0.084621	0.679353	-
Rv0013	trpG	12	1.4	2.9	4.4	2.4	1.7	0.8	-0.187	0.124	0.373	0.018	-0.116	-0.320	16.9	35.3	53.3	28.6	20.8	10.1	0.08	0.08	0.08	0.08	0.08	0.08	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0014c	pknB	22	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0015c	pknA	13	1.3	8.2	5.8	5.8	3.4	6.7	-0.691	0.374	0.080	0.086	-0.280	0.192	25.7	106.7	75.1	75.7	44.2	86.5	0.05	0.08	0.08	0.08	0.08	0.08	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0016c	pbpA	34	51.0	71.8	59.6	66.5	87.5	60.0	-0.345	0.113	-0.138	0.009	0.381	-0.129	69.3	85.7	77.9	78.9	94.5	72.8	0.74	0.84	0.76	0.84	0.93	0.82	0.050433	0.474595	-
Rv0017c	rodA	23	76.1	131.0	70.3	141.5	181.5	128.8	-0.642	0.104	-0.748	0.211	0.560	0.080	87.5	133.9	77.0	152.5	181.5	128.8	0.87	0.98	0.91	0.93	1.00	1.00	0.000000	0.000014	-
Rv0018c	ppp	23	58.5	75.4	61.7	93.2	98.1	83.5	-0.393	-0.053	-0.322	0.235	0.306	0.086	103.5	123.9	113.6	153.1	161.2	137.2	0.57	0.61	0.54	0.61	0.61	0.61	0.209086	1.000000	-
Rv0019c	-	12	212.4	227.1	165.6	285.2	272.2	228.5	-0.123	-0.029	-0.473	0.293	0.227	-0.021	212.4	227.1	172.8	285.2	272.2	228.5	1.00	1.00	0.96	1.00	1.00	1.00	0.025046	0.281502	-
Rv0020c	TB39.8	50	23.1	28.7	22.6	31.0	31.1	29.7	-0.219	0.045	-0.246	0.137	0.144	0.086	144.4	179.6	141.1	193.4	194.6	174.7	0.16	0.16	0.16	0.16	0.16	0.17	0.750252	1.000000	-
Rv0021c	-	18	257.3	247.8	260.7	244.1	248.5	235.7	0.046	-0.007	0.065	-0.028	-0.003	-0.077	257.3	254.8	260.7	244.1	248.5	235.7	1.00	0.97	1.00	1.00	1.00	1.00	0.967228	1.000000	-
Rv0022c	whiB5	8	345.2	361.5	382.6	350.3	297.7	288.6	0.031	0.097	0.178	0.052	-0.179	-0.223	376.5	361.5	382.6	350.3	340.2	307.8	0.92	1.00	1.00	1.00	0.88	0.94	0.636490	1.000000	-
Rv0023	-	12	3.6	9.7	1.6	12.1	18.6	4.7	-0.642	0.135	-1.023	0.356	0.817	-0.460	25.7	23.2	37.9	27.3	29.7	18.9	0.14	0.42	0.04	0.44	0.62	0.25	0.000537	0.011526	-
Rv0024	-	11	325.0	287.0	330.5	261.7	303.8	273.1	0.129	-0.048	0.152	-0.179	0.033	-0.118	325.0	300.6	330.5	287.8	303.8	300.5	1.00	0.95	1.00	0.91	1.00	0.91	0.437178	1.000000	-
Rv0025	-	6	172.5	168.1	163.1	179.5	144.6	157.5	0.069	0.033	-0.010	0.125	-0.178	-0.059	182.7	168.1	163.1	179.5	144.6	157.5	0.94	1.00	1.00	1.00	1.00	1.00	0.968647	1.000000	-
Rv0026	-	12	119.9	123.4	112.4	121.8	112.9	142.3	-0.026	0.015	-0.115	-0.003	-0.109	0.212	159.9	148.1	134.9	146.2	123.1	155.2	0.75	0.83	0.83	0.83	0.92	0.92	0.918826	1.000000	-
Rv0027	-	5	40.1	25.4	41.9	33.7	42.8	39.3	0.096	-0.472	0.151	-0.124	0.179	0.070	40.1	28.3	59.8	36.1	47.5	56.1	1.00	0.90	0.70	0.93	0.90	0.70	0.089202	0.696425	-
Rv0028	-	4	122.0	159.4	127.4	117.4	97.5	144.8	-0.067	0.305	-0.007	-0.121	-0.377	0.171	122.0	159.4	127.4	117.4	97.5	144.8	1.00	1.00	1.00	1.00	1.00	1.00	0.750964	1.000000	-
Rv0029	-	17	237.3	227.7	257.4	232.6	236.8	243.1	-0.011	-0.069	0.104	-0.039	-0.014	0.023	237.3	241.9	273.5	247.1	236.8	243.1	1.00	0.94	0.94	0.94	1.00	1.00	0.375540	1.000000	-
Rv0030	-	5	209.7	234.4	261.4	215.2	252.6	214.2	-0.138	0.019	0.173	-0.101	0.125	-0.108	209.7	234.4	261.4	269.0	252.6	214.2	1.00	1.00	1.00	0.80	1.00	1.00	0.350441	1.000000	-
Rv0031	-	1	0.0	30.1	15.5	0.0	102.9	51.4	-2.938	-0.127	-0.902	-2.938	1.494	0.558	0.0	30.1	31.0	0.0	102.9	51.4	0.00	1.00	0.50	0.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0032	bioF2	50	106.2	102.5	107.0	108.0	105.9	113.1	-0.012	-0.061	-0.002	0.011	-0.015	0.075	147.5	136.7	159.7	132.8	137.6	139.6	0.72	0.75	0.67	0.81	0.77	0.81	0.742727	1.000000	-
Rv0033	acpA	3	51.1	71.4	65.6	62.0	77.6	82.3	-0.387	0.059	-0.055	-0.130	0.172	0.251	51.1	71.4	65.6	62.0	77.6	82.3	1.00	1.00	1.00	1.00	1.00	1.00	0.885847	1.000000	-
Rv0034	-	5	175.4	188.4	147.4	171.3	156.5	178.5	0.047	0.147	-0.196	0.014	-0.112	0.072	219.2	209.3	184.2	183.5	156.5	198.4	0.80	0.90	0.80	0.93	1.00	0.90	0.901108	1.000000	-
Rv0035	fadD34	24	332.8	320.3	341.1	345.6	313.2	327.6	0.011	-0.043	0.047	0.065	-0.075	-0.011	357.6	341.7	341.1	350.5	326.8	327.6	0.93	0.94	1.00	0.99	0.96	1.00	0.394177	1.000000	-
Rv0036c	-	4	345.2	383.3	327.7	344.3	345.8	332.6	-0.005	0.144	-0.079	-0.009	-0.003	-0.058	345.2	383.3	327.7	344.3	345.8	332.6	1.00	1.00	1.00	1.00	1.00	1.00	0.971788	1.000000	-
Rv0037c	-	17	211.4	273.5	252.9	352.7	326.4	241.5	-0.379	-0.015	-0.126	0.346	0.236	-0.191	229.4	273.5	252.9	352.7	358.0	241.5	0.92	1.00	1.00	1.00	0.91	1.00	0.017378	0.212194	-
Rv0038	-	7	222.1	220.6	226.0	181.1	218.8	208.9	0.059	0.050	0.084	-0.227	0.038	-0.027	222.1	237.6	226.0	181.1	218.8	208.9	1.00	0.93	1.00	1.00	1.00	1.00	0.878071	1.000000	-
Rv0039c	-	4	635.5	474.6	550.3	498.6	415.6	420.6	0.345	-0.072	0.139	-0.002	-0.262	-0.244	635.5	632.8	550.3	498.6	474.9	560.8	1.00	0.75	1.00	1.00	0.88	0.75	0.352179	1.000000	-
Rv0040c	mtc28	8	196.9	215.2	146.9	195.3	218.3	186.0	0.028	0.152	-0.383	0.016	0.173	-0.053	196.9	215.2	146.9	195.3	218.3	186.0	1.00	1.00	1.00	1.00	1.00	1.00	0.822460	1.000000	-
Rv0041	leuS	66	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0042c	-	5	58.9	70.3	75.3	51.5	46.5	70.4	-0.072	0.164	0.258	-0.248	-0.382	0.167	63.1	70.3	83.7	51.5	46.5	78.2	0.93	1.00	0.90	1.00	1.00	0.90	0.335526	1.000000	-
Rv0043c	-	7	105.5	121.6	96.9	93.8	76.5	107.3	0.070	0.266	-0.047	-0.091	-0.370	0.094	105.5	121.6	96.9	93.8	76.5	107.3	1.00	1.00	1.00	1.00	1.00	1.00	0.305845	1.000000	-
Rv0044c	-	19	118.0	130.7	120.9	127.3	124.9	128.6	-0.081	0.061	-0.047	0.025	-0.002	0.039	137.2	141.9	131.2	134.4	135.6	128.6	0.86	0.92	0.92	0.95	0.92	1.00	0.607605	1.000000	-
Rv0045c	-	6	299.2	312.3	335.2	334.6	325.2	395.2	-0.155	-0.094	0.007	0.004	-0.036	0.241	299.2	312.3	335.2	334.6	325.2	395.2	1.00	1.00	1.00	1.00	1.00	1.00	0.969744	1.000000	-
Rv0046c	ino1	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0047c	-	7	106.4	119.5	115.7	161.9	152.9	123.1	-0.276	-0.116	-0.161	0.307	0.227	-0.075	117.6	128.7	124.6	179.0	178.4	143.7	0.90	0.93	0.93	0.90	0.86	0.86	0.838797	1.000000	-
Rv0048c	-	14	161.7	144.8	134.0	153.2	165.8	174.7	0.053	-0.101	-0.209	-0.022	0.088	0.161	205.8	162.2	163.1	169.4	193.4	195.6	0.79	0.89	0.82	0.90	0.86	0.89	0.949020	1.000000	-
Rv0049	-	6	164.1	286.3	204.7	362.0	382.1	233.0	-0.713	0.073	-0.402	0.406	0.483	-0.219	184.6	286.3	245.7	362.0	382.1	233.0	0.89	1.00	0.83	1.00	1.00	1.00	0.110898	0.784724	-
Rv0050	ponA1	33	37.0	60.2	41.1	55.8	65.6	49.6	-0.429	0.205	-0.294	0.105	0.320	-0.051	51.6	66.2	57.7	72.7	73.3	55.5	0.72	0.91	0.71	0.77	0.89	0.89	0.002083	0.037780	-
Rv0051	-	33	117.5	106.2	120.2	120.2	122.0	105.3	0.027	-0.112	0.058	0.059	0.079	-0.125	136.8	116.8	130.0	126.6	138.8	110.3	0.86	0.91	0.92	0.95	0.88	0.95	0.497814	1.000000	-
Rv0052	-	6	130.2	60.1	100.6	105.2	74.9	93.3	0.449	-0.606	0.092	0.154	-0.310	-0.011	130.2	60.1	109.7	105.2	81.7	112.0	1.00	1.00	0.92	1.00	0.92	0.83	0.155290	0.965118	-
Rv0053	rpsF	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0054	ssb	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0055	rpsR	4	15.5	21.8	19.5	27.4	39.7	22.1	-0.516	-0.132	-0.260	0.145	0.608	-0.116	62.1	87.0	78.0	109.8	158.9	88.3	0.25	0.25	0.25	0.25	0.25	0.25	0.604188	1.000000	-
Rv0056	rplI	7	152.3	153.3	116.3	93.4	103.7	153.2	0.234	0.244	-0.141	-0.443	-0.298	0.243	199.8	165.1	135.6	103.2	121.0	165.0	0.76	0.93	0.86	0.90	0.86	0.93	0.663703	1.000000	-
Rv0057	-	15	45.7	51.3	64.4	60.9	66.8	59.1	-0.314	-0.162	0.139	0.063	0.188	0.024	58.8	61.6	96.6	76.1	71.6	73.8	0.78	0.83	0.67	0.80	0.93	0.80	0.168147	0.996892	-
Rv0058	dnaB	36	0.0	0.0	0.0	0.0	0.1	0.0	-0.006	-0.006	-0.006	-0.006	0.030	-0.006	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.01	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0059	-	16	187.0	141.1	193.9	158.2	171.2	126.0	0.194	-0.201	0.244	-0.041	0.069	-0.358	208.8	155.7	221.6	185.2	182.6	149.4	0.90	0.91	0.88	0.85	0.94	0.84	0.828349	1.000000	-
Rv0060	-	20	0.0	0.5	0.0	1.4	2.3	0.5	-0.210	-0.070	-0.210	0.145	0.335	-0.072	0.0	10.2	0.0	28.0	46.0	10.1	0.00	0.05	0.00	0.05	0.05	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0061	-	6	72.0	73.0	115.0	76.1	80.2	69.3	-0.158	-0.140	0.481	-0.083	-0.013	-0.209	81.0	73.0	125.4	76.1	80.2	69.3	0.89	1.00	0.92	1.00	1.00	1.00	0.503410	1.000000	-
Rv0062	celA1	19	251.4	255.9	232.6	264.7	238.6	229.6	0.034	0.059	-0.076	0.107	-0.040	-0.095	255.9	270.1	238.9	264.7	238.6	229.6	0.98	0.95	0.97	1.00	1.00	1.00	0.609077	1.000000	-
Rv0063	-	21	112.6	107.1	117.6	103.0	104.9	109.3	0.043	-0.025	0.104	-0.080	-0.054	0.003	128.9	109.7	123.5	108.1	110.1	114.8	0.87	0.98	0.95	0.95	0.95	0.95	0.864149	1.000000	-
Rv0064	-	64	84.1	73.3	92.8	78.1	68.0	76.9	0.087	-0.098	0.222	-0.014	-0.201	-0.034	100.9	86.9	111.0	92.0	82.1	89.5	0.83	0.84	0.84	0.85	0.83	0.86	0.875568	1.000000	-
Rv0065	-	7	103.7	122.3	106.5	114.9	120.1	113.4	-0.124	0.104	-0.088	0.017	0.079	-0.001	136.1	155.7	124.2	141.9	140.1	113.4	0.76	0.79	0.86	0.81	0.86	1.00	0.610859	1.000000	-
Rv0066c	icd2	32	59.8	87.7	57.7	110.0	117.6	81.7	-0.486	0.030	-0.533	0.342	0.434	-0.065	83.2	105.9	73.9	122.8	125.5	93.4	0.72	0.83	0.78	0.90	0.94	0.88	0.000054	0.001434	-
Rv0067c	-	11	84.6	139.3	98.4	127.1	145.2	99.1	-0.429	0.259	-0.222	0.131	0.316	-0.212	93.0	153.2	108.2	139.8	145.2	103.8	0.91	0.91	0.91	0.91	1.00	0.95	0.023720	0.269638	-
Rv0068	-	11	208.5	188.3	182.7	185.6	188.6	192.3	0.123	-0.020	-0.063	-0.040	-0.018	0.010	221.9	197.2	223.3	235.6	188.6	192.3	0.94	0.95	0.82	0.79	1.00	1.00	0.216460	1.000000	-
Rv0069c	sdaA	11	64.3	64.7	65.4	51.5	66.7	63.7	0.034	0.042	0.056	-0.261	0.082	0.020	75.8	64.7	79.9	58.6	81.5	66.7	0.85	1.00	0.82	0.88	0.82	0.95	0.353422	1.000000	-
Rv0070c	glyA2	16	175.6	171.7	186.6	174.0	166.8	148.2	0.042	0.010	0.127	0.029	-0.031	-0.196	191.6	196.2	199.0	203.7	172.1	163.5	0.92	0.88	0.94	0.85	0.97	0.91	0.871233	1.000000	-
Rv0071	-	8	139.7	151.5	175.9	149.7	137.6	218.2	-0.207	-0.095	0.115	-0.111	-0.229	0.418	159.7	202.0	201.0	171.1	137.6	232.8	0.88	0.75	0.88	0.88	1.00	0.94	0.447956	1.000000	-
Rv0072	-	16	249.3	289.5	249.0	259.8	271.0	275.5	-0.090	0.122	-0.092	-0.032	0.028	0.051	272.0	308.8	265.6	271.1	271.0	293.9	0.92	0.94	0.94	0.96	1.00	0.94	0.787601	1.000000	-
Rv0073	-	13	256.2	249.8	199.8	208.8	209.7	223.8	0.186	0.150	-0.165	-0.104	-0.098	-0.006	256.2	249.8	216.4	208.8	209.7	223.8	1.00	1.00	0.92	1.00	1.00	1.00	0.551428	1.000000	-
Rv0074	-	14	144.3	144.9	143.7	145.6	142.3	166.3	-0.034	-0.028	-0.040	-0.021	-0.053	0.164	144.3	144.9	149.0	149.1	147.5	166.3	1.00	1.00	0.96	0.98	0.96	1.00	0.843118	1.000000	-
Rv0075	-	22	170.5	170.1	174.3	177.2	164.9	169.9	-0.005	-0.009	0.026	0.049	-0.052	-0.011	212.3	207.9	213.1	208.8	196.1	196.7	0.80	0.82	0.82	0.85	0.84	0.86	0.999994	1.000000	-
Rv0076c	-	3	171.9	191.9	158.7	169.1	244.6	261.8	-0.210	-0.056	-0.322	-0.233	0.286	0.383	171.9	191.9	158.7	169.1	244.6	261.8	1.00	1.00	1.00	1.00	1.00	1.00	0.429712	1.000000	-
Rv0077c	-	11	148.0	106.0	143.9	140.6	118.5	115.4	0.194	-0.268	0.155	0.122	-0.114	-0.152	148.0	111.1	143.9	140.6	130.4	126.9	1.00	0.95	1.00	1.00	0.91	0.91	0.313361	1.000000	-
Rv0078	-	7	76.4	69.9	45.6	66.5	66.9	62.6	0.225	0.104	-0.460	0.038	0.046	-0.043	100.3	88.9	71.0	82.2	85.2	73.0	0.76	0.79	0.64	0.81	0.79	0.86	0.992854	1.000000	-
Rv0078A	-	9	94.2	84.6	94.4	98.4	91.5	110.9	-0.021	-0.168	-0.018	0.039	-0.061	0.203	101.8	89.6	106.2	102.2	96.9	117.4	0.93	0.94	0.89	0.96	0.94	0.94	0.993692	1.000000	-
Rv0079	-	13	265.9	230.2	239.6	234.2	223.3	202.3	0.189	-0.014	0.042	0.010	-0.058	-0.196	272.9	239.4	249.1	240.4	223.3	202.3	0.97	0.96	0.96	0.97	1.00	1.00	0.948984	1.000000	-
Rv0080	-	3	53.3	49.2	44.9	60.2	28.6	73.3	0.044	-0.063	-0.180	0.204	-0.754	0.469	53.3	49.2	53.9	67.7	34.3	73.3	1.00	1.00	0.83	0.89	0.83	1.00	0.446269	1.000000	-
Rv0081	-	5	93.2	91.4	117.0	71.7	122.0	97.6	-0.080	-0.107	0.233	-0.436	0.291	-0.017	116.5	130.5	146.2	119.6	152.5	139.4	0.80	0.70	0.80	0.60	0.80	0.70	0.938299	1.000000	-
Rv0082	-	7	115.3	121.5	122.8	123.7	109.6	100.9	-0.004	0.069	0.083	0.093	-0.074	-0.188	142.4	130.9	156.3	173.2	118.0	117.7	0.81	0.93	0.79	0.71	0.93	0.86	0.859666	1.000000	-
Rv0083	-	20	256.7	239.0	255.3	257.9	257.9	210.8	0.059	-0.042	0.051	0.065	0.066	-0.220	280.0	265.5	276.0	257.9	286.6	234.2	0.92	0.90	0.93	1.00	0.90	0.90	0.260681	1.000000	-
Rv0084	hycD	7	115.9	127.2	130.8	123.8	115.6	140.4	-0.112	0.017	0.056	-0.020	-0.115	0.155	135.2	148.4	152.6	144.5	134.9	163.8	0.86	0.86	0.86	0.86	0.86	0.86	0.999378	1.000000	-
Rv0085	hycP	3	87.0	91.8	95.6	116.7	117.6	145.1	-0.309	-0.236	-0.180	0.095	0.105	0.398	97.9	91.8	95.6	116.7	117.6	145.1	0.89	1.00	1.00	1.00	1.00	1.00	0.830988	1.000000	-
Rv0086	hycQ	14	108.5	112.8	104.9	108.7	99.4	99.4	0.037	0.091	-0.010	0.039	-0.083	-0.084	119.9	131.6	104.9	117.0	111.3	103.1	0.90	0.86	1.00	0.93	0.89	0.96	0.429540	1.000000	-
Rv0087	hycE	22	126.6	86.2	112.9	82.0	97.2	79.1	0.363	-0.167	0.204	-0.234	-0.002	-0.282	160.7	108.3	141.9	117.7	122.2	102.4	0.79	0.80	0.80	0.70	0.80	0.77	0.721340	1.000000	-
Rv0088	-	11	97.9	65.6	70.2	65.5	74.8	60.0	0.412	-0.131	-0.040	-0.134	0.045	-0.250	101.0	72.2	96.6	72.0	78.4	69.5	0.97	0.91	0.73	0.91	0.95	0.86	0.319228	1.000000	-
Rv0089	-	9	200.7	185.0	220.5	166.3	192.1	133.6	0.129	0.015	0.262	-0.135	0.068	-0.440	225.7	208.1	248.1	172.7	192.1	150.3	0.89	0.89	0.89	0.96	1.00	0.89	0.610693	1.000000	-
Rv0090	-	12	219.9	163.4	193.6	215.1	188.8	161.4	0.203	-0.214	0.024	0.172	-0.012	-0.231	232.8	178.2	232.3	215.1	197.0	176.1	0.94	0.92	0.83	1.00	0.96	0.92	0.515138	1.000000	-
Rv0091	mtn	11	203.7	177.7	190.1	194.0	166.3	167.0	0.150	-0.042	0.053	0.081	-0.135	-0.129	268.9	217.2	232.4	206.5	203.3	229.7	0.76	0.82	0.82	0.94	0.82	0.73	0.702425	1.000000	-
Rv0092	ctpA	27	184.7	173.4	164.8	156.2	136.2	169.1	0.166	0.077	0.006	-0.068	-0.260	0.043	191.8	187.2	189.4	164.4	138.7	175.6	0.96	0.93	0.87	0.95	0.98	0.96	0.405987	1.000000	-
Rv0093c	-	7	233.6	206.9	237.0	193.4	207.4	193.8	0.137	-0.035	0.157	-0.129	-0.031	-0.126	233.6	241.3	237.0	225.7	242.0	226.1	1.00	0.86	1.00	0.86	0.86	0.86	0.433685	1.000000	-
Rv0094c	-	14	194.2	194.2	209.9	200.2	187.7	213.1	-0.040	-0.041	0.069	0.002	-0.088	0.090	226.6	209.1	235.1	247.3	219.0	229.5	0.86	0.93	0.89	0.81	0.86	0.93	0.951997	1.000000	-
Rv0095c	-	7	25.0	34.0	42.5	22.2	34.8	42.4	-0.362	0.020	0.304	-0.499	0.048	0.301	52.4	53.0	66.2	51.9	40.6	84.9	0.48	0.64	0.64	0.43	0.86	0.50	0.280225	1.000000	-
Rv0096	PPE1	30	202.0	192.7	221.2	221.5	185.7	190.0	-0.001	-0.068	0.127	0.129	-0.120	-0.088	230.1	202.8	237.0	229.2	202.6	203.5	0.88	0.95	0.93	0.97	0.92	0.93	0.824154	1.000000	-
Rv0097	-	24	48.8	51.5	51.9	49.2	49.5	59.4	-0.076	-0.006	0.004	-0.065	-0.058	0.184	68.9	63.4	73.2	65.6	59.4	71.3	0.71	0.81	0.71	0.75	0.83	0.83	0.952083	1.000000	-
Rv0098	-	10	73.9	102.4	57.6	67.8	61.6	71.8	0.025	0.470	-0.307	-0.090	-0.220	-0.013	100.7	128.0	76.9	88.4	77.0	79.8	0.73	0.80	0.75	0.77	0.80	0.90	0.528373	1.000000	-
Rv0099	fadD10	30	44.4	48.4	54.2	43.5	41.1	39.4	-0.023	0.089	0.240	-0.048	-0.123	-0.175	71.3	65.9	70.7	65.3	54.7	56.3	0.62	0.73	0.77	0.67	0.75	0.70	0.777490	1.000000	-
Rv0100	-	3	46.5	40.6	34.4	40.7	63.8	60.9	-0.036	-0.213	-0.422	-0.208	0.381	0.320	52.4	40.6	41.3	40.7	63.8	60.9	0.89	1.00	0.83	1.00	1.00	1.00	0.582267	1.000000	-
Rv0101	nrp	103	115.8	98.7	116.8	112.4	99.2	108.9	0.088	-0.132	0.100	0.047	-0.125	0.004	143.1	123.2	143.2	131.0	115.5	124.6	0.81	0.80	0.82	0.86	0.86	0.87	0.629567	1.000000	-
Rv0102	-	38	4.2	6.2	2.5	2.5	2.3	6.0	0.042	0.324	-0.257	-0.257	-0.300	0.302	23.9	17.4	17.1	15.7	14.3	16.9	0.18	0.36	0.14	0.16	0.16	0.36	0.002861	0.049847	-
Rv0103c	ctpB	28	199.3	188.0	208.3	201.6	190.9	168.5	0.047	-0.035	0.109	0.063	-0.014	-0.189	217.4	188.0	216.0	206.5	201.7	181.4	0.92	1.00	0.96	0.98	0.95	0.93	0.535903	1.000000	-
Rv0104	-	25	259.0	256.9	248.4	237.8	239.1	238.5	0.069	0.057	0.010	-0.051	-0.044	-0.047	266.1	267.6	253.5	244.4	249.0	248.5	0.97	0.96	0.98	0.97	0.96	0.96	0.996427	1.000000	-
Rv0105c	rpmB	5	206.6	196.4	180.8	138.8	144.0	143.7	0.287	0.216	0.100	-0.270	-0.219	-0.221	221.3	245.5	200.9	138.8	180.0	179.7	0.93	0.80	0.90	1.00	0.80	0.80	0.483678	1.000000	-
Rv0106	-	10	142.9	117.8	113.8	109.6	105.0	115.6	0.272	0.004	-0.043	-0.096	-0.155	-0.022	147.9	138.6	113.8	121.8	116.7	144.5	0.97	0.85	1.00	0.90	0.90	0.80	0.301193	1.000000	-
Rv0107c	ctpI	59	132.5	120.4	130.2	127.7	128.1	113.1	0.077	-0.056	0.053	0.026	0.030	-0.143	151.3	145.0	149.1	155.9	142.6	132.1	0.88	0.83	0.87	0.82	0.90	0.86	0.661905	1.000000	-
Rv0108c	-	2	16.9	18.0	26.7	26.2	23.0	34.4	-0.415	-0.342	0.118	0.094	-0.061	0.432	20.3	18.0	35.6	39.2	30.6	34.4	0.83	1.00	0.75	0.67	0.75	1.00	0.373023	1.000000	-
Rv0109	PE_PGRS1	25	94.3	59.8	75.5	79.6	79.0	71.0	0.284	-0.331	-0.018	0.054	0.042	-0.102	124.1	76.7	94.4	101.2	94.0	86.5	0.76	0.78	0.80	0.79	0.84	0.82	0.850005	1.000000	-
Rv0110	-	13	342.9	328.1	346.6	339.8	300.5	300.5	0.070	0.007	0.085	0.057	-0.117	-0.118	342.9	328.1	346.6	339.8	300.5	312.5	1.00	1.00	1.00	1.00	1.00	0.96	0.928403	1.000000	-
Rv0111	-	40	159.6	152.8	150.3	137.0	155.8	151.9	0.075	0.015	-0.009	-0.138	0.041	0.007	180.6	156.7	171.7	141.7	166.2	164.2	0.88	0.97	0.88	0.97	0.94	0.93	0.193167	1.000000	-
Rv0112	gca	29	1.6	2.3	1.6	2.0	3.2	3.0	-0.147	0.004	-0.135	-0.059	0.175	0.130	19.4	19.0	18.8	21.5	26.5	17.1	0.08	0.12	0.09	0.09	0.12	0.17	0.645233	1.000000	-
Rv0113	gmhA	12	68.6	65.4	59.6	39.0	67.3	62.3	0.170	0.107	-0.016	-0.570	0.146	0.042	79.6	74.8	62.2	54.0	67.3	71.2	0.86	0.88	0.96	0.72	1.00	0.88	0.039503	0.404150	-
Rv0114	gmhB	9	180.5	178.5	150.5	146.7	150.0	178.3	0.134	0.118	-0.121	-0.157	-0.125	0.116	180.5	178.5	159.4	146.7	150.0	178.3	1.00	1.00	0.94	1.00	1.00	1.00	0.939990	1.000000	-
Rv0115	hddA	17	162.2	141.3	132.9	149.6	151.4	162.0	0.110	-0.082	-0.168	-0.003	0.014	0.109	165.4	141.3	150.6	165.8	160.9	162.0	0.98	1.00	0.88	0.90	0.94	1.00	0.214114	1.000000	-
Rv0116c	-	15	114.1	116.6	113.6	98.6	113.3	124.1	0.009	0.039	0.002	-0.192	-0.001	0.125	116.7	116.6	117.5	98.6	113.3	124.1	0.98	1.00	0.97	1.00	1.00	1.00	0.762117	1.000000	-
Rv0117	oxyS	16	70.8	65.2	75.8	60.1	67.7	80.8	0.014	-0.096	0.106	-0.205	-0.047	0.193	82.9	72.0	86.6	72.2	77.4	89.2	0.85	0.91	0.88	0.83	0.88	0.91	0.981932	1.000000	-
Rv0118c	oxcA	25	149.3	139.2	151.4	142.8	115.5	111.8	0.140	0.042	0.160	0.079	-0.217	-0.261	162.3	158.2	180.3	150.9	137.5	136.4	0.92	0.88	0.84	0.95	0.84	0.82	0.343205	1.000000	-
Rv0119	fadD7	13	49.6	58.1	45.9	56.0	56.1	36.9	-0.021	0.186	-0.123	0.139	0.140	-0.403	66.7	88.8	70.2	66.2	76.7	48.0	0.74	0.65	0.65	0.85	0.73	0.77	0.503002	1.000000	-
Rv0120c	fusA2	25	50.7	46.9	61.4	52.7	47.3	52.9	-0.033	-0.136	0.221	0.019	-0.124	0.022	65.6	58.6	73.1	62.8	57.7	66.1	0.77	0.80	0.84	0.84	0.82	0.80	0.957889	1.000000	-
Rv0121c	-	10	152.6	155.4	140.6	134.3	136.8	123.7	0.115	0.140	0.000	-0.063	-0.038	-0.177	199.1	194.3	234.4	201.5	195.4	137.5	0.77	0.80	0.60	0.67	0.70	0.90	0.729062	1.000000	-
Rv0122	-	9	46.5	35.6	57.3	43.4	50.1	73.7	-0.124	-0.466	0.151	-0.212	-0.025	0.488	69.7	58.3	79.3	73.3	82.0	82.9	0.67	0.61	0.72	0.59	0.61	0.89	0.598609	1.000000	-
Rv0123	-	7	65.2	82.5	89.3	67.9	59.0	52.8	-0.086	0.233	0.341	-0.030	-0.218	-0.365	114.0	144.4	178.6	158.5	137.7	105.7	0.57	0.57	0.50	0.43	0.43	0.50	0.820549	1.000000	-
Rv0124	PE_PGRS2	11	263.9	268.5	270.4	249.6	229.8	231.1	0.064	0.089	0.099	-0.015	-0.132	-0.123	290.3	295.4	297.5	257.4	252.8	231.1	0.91	0.91	0.91	0.97	0.91	1.00	0.861985	1.000000	-
Rv0125	pepA	9	179.1	162.4	191.8	146.4	137.0	163.3	0.129	-0.008	0.226	-0.153	-0.246	-0.001	179.1	162.4	215.8	146.4	137.0	172.9	1.00	1.00	0.89	1.00	1.00	0.94	0.465224	1.000000	-
Rv0126	treS	29	137.0	189.5	125.2	177.4	189.7	134.0	-0.206	0.248	-0.332	0.155	0.250	-0.237	159.0	207.3	151.2	195.4	200.1	155.4	0.86	0.91	0.83	0.91	0.95	0.86	0.149333	0.944275	-
Rv0127	-	27	72.3	100.8	64.0	99.3	96.3	94.6	-0.265	0.189	-0.429	0.167	0.125	0.101	82.4	104.7	76.8	103.1	100.0	94.6	0.88	0.96	0.83	0.96	0.96	1.00	0.001881	0.034583	-
Rv0128	-	17	278.5	251.0	269.0	258.6	256.4	268.3	0.078	-0.070	0.029	-0.027	-0.039	0.025	278.5	251.0	269.0	258.6	256.4	268.3	1.00	1.00	1.00	1.00	1.00	1.00	0.992549	1.000000	-
Rv0129c	fbpC	27	48.5	67.7	54.3	56.0	89.0	62.0	-0.343	0.098	-0.197	-0.155	0.469	-0.019	67.8	71.6	73.2	68.7	96.1	69.8	0.72	0.94	0.74	0.81	0.93	0.89	0.008160	0.118390	-
Rv0130	-	3	74.9	80.0	92.9	97.6	89.9	79.0	-0.184	-0.094	0.110	0.178	0.065	-0.111	84.2	80.0	92.9	97.6	89.9	79.0	0.89	1.00	1.00	1.00	1.00	1.00	0.960986	1.000000	-
Rv0131c	fadE1	18	142.4	162.9	162.7	163.9	160.4	153.9	-0.142	0.045	0.044	0.054	0.024	-0.034	153.8	172.5	172.2	173.5	160.4	163.0	0.93	0.94	0.94	0.94	1.00	0.94	0.848213	1.000000	-
Rv0132c	fgd2	14	162.5	173.2	175.2	182.6	157.9	176.8	-0.075	0.015	0.031	0.089	-0.115	0.043	179.6	194.0	213.3	196.6	157.9	176.8	0.90	0.89	0.82	0.93	1.00	1.00	0.279991	1.000000	-
Rv0133	-	6	248.1	216.5	212.3	258.0	237.4	216.7	0.098	-0.094	-0.122	0.153	0.036	-0.093	248.1	216.5	231.6	258.0	237.4	216.7	1.00	1.00	0.92	1.00	1.00	1.00	0.943004	1.000000	-
Rv0134	ephF	11	259.6	256.9	275.7	234.1	243.2	233.7	0.050	0.035	0.136	-0.096	-0.042	-0.099	259.6	256.9	275.7	234.1	243.2	233.7	1.00	1.00	1.00	1.00	1.00	1.00	0.968259	1.000000	-
Rv0135c	-	11	267.1	169.0	214.7	103.5	122.5	157.5	0.617	-0.028	0.309	-0.710	-0.476	-0.126	267.1	177.1	214.7	106.7	122.5	165.0	1.00	0.95	1.00	0.97	1.00	0.95	0.011265	0.151338	-
Rv0136	cyp138	22	181.2	184.9	191.7	177.5	185.4	183.7	-0.022	0.006	0.057	-0.051	0.010	-0.003	196.1	203.4	200.9	185.9	203.9	187.9	0.92	0.91	0.95	0.95	0.91	0.98	0.936193	1.000000	-
Rv0137c	msrA	11	60.6	64.7	67.1	52.9	74.4	75.7	-0.112	-0.024	0.024	-0.293	0.164	0.186	68.9	67.8	86.8	64.6	81.9	75.7	0.88	0.95	0.77	0.82	0.91	1.00	0.341234	1.000000	-
Rv0138	-	6	591.0	549.2	541.8	532.4	491.4	495.1	0.146	0.042	0.022	-0.003	-0.118	-0.107	591.0	549.2	541.8	532.4	491.4	495.1	1.00	1.00	1.00	1.00	1.00	1.00	0.977117	1.000000	-
Rv0139	-	12	411.9	361.4	398.8	406.7	362.6	336.7	0.116	-0.070	0.070	0.098	-0.065	-0.171	449.4	361.4	398.8	406.7	362.6	336.7	0.92	1.00	1.00	1.00	1.00	1.00	0.484424	1.000000	-
Rv0140	-	15	123.4	115.6	118.6	114.5	119.6	127.1	0.042	-0.049	-0.014	-0.063	-0.002	0.082	129.2	123.8	136.8	117.1	128.1	136.1	0.96	0.93	0.87	0.98	0.93	0.93	0.891350	1.000000	-
Rv0141c	-	8	183.0	204.0	204.9	189.0	185.1	175.6	-0.055	0.098	0.104	-0.009	-0.039	-0.112	183.0	233.1	204.9	189.0	185.1	200.7	1.00	0.88	1.00	1.00	1.00	0.88	0.219054	1.000000	-
Rv0142	-	5	433.1	377.3	348.1	355.4	373.9	258.7	0.272	0.076	-0.039	-0.009	0.063	-0.460	464.0	377.3	348.1	380.8	373.9	323.4	0.93	1.00	1.00	0.93	1.00	0.80	0.699674	1.000000	-
Rv0143c	-	25	179.4	156.0	181.4	150.8	176.3	179.6	0.071	-0.125	0.086	-0.173	0.046	0.072	189.5	162.5	188.9	159.3	176.3	195.2	0.95	0.96	0.96	0.95	1.00	0.92	0.597929	1.000000	-
Rv0144	-	14	112.4	131.0	95.9	107.5	98.0	118.8	0.022	0.234	-0.197	-0.039	-0.166	0.099	147.5	166.7	127.8	145.7	119.3	151.2	0.76	0.79	0.75	0.74	0.82	0.79	0.994651	1.000000	-
Rv0145	-	14	313.7	273.4	251.0	268.8	238.3	250.1	0.235	0.040	-0.081	0.015	-0.155	-0.087	337.9	306.2	281.2	268.8	256.6	269.4	0.93	0.89	0.89	1.00	0.93	0.93	0.696987	1.000000	-
Rv0146	-	15	375.2	357.1	322.7	320.7	326.7	321.5	0.152	0.081	-0.063	-0.072	-0.045	-0.068	383.8	357.1	322.7	343.6	326.7	321.5	0.98	1.00	1.00	0.93	1.00	1.00	0.596191	1.000000	-
Rv0147	-	23	278.0	272.9	257.5	250.9	268.1	287.2	0.046	0.020	-0.062	-0.099	-0.005	0.092	286.3	285.3	275.4	262.3	280.2	307.2	0.97	0.96	0.93	0.96	0.96	0.93	0.973877	1.000000	-
Rv0148	-	15	285.3	297.7	251.6	254.0	234.9	253.1	0.117	0.177	-0.061	-0.048	-0.159	-0.053	291.8	297.7	260.3	254.0	234.9	253.1	0.98	1.00	0.97	1.00	1.00	1.00	0.890565	1.000000	-
Rv0149	-	19	179.8	181.6	185.6	175.3	166.7	172.9	0.022	0.036	0.067	-0.014	-0.084	-0.033	186.3	197.1	195.9	175.3	166.7	187.7	0.96	0.92	0.95	1.00	1.00	0.92	0.412637	1.000000	-
Rv0150c	-	4	11.8	23.0	21.2	13.8	18.5	28.4	-0.541	0.196	0.102	-0.382	-0.058	0.450	35.4	30.7	42.5	27.5	49.3	37.9	0.33	0.75	0.50	0.50	0.38	0.75	0.631332	1.000000	-
Rv0151c	PE1	40	120.4	128.7	110.1	115.0	121.1	136.0	-0.017	0.076	-0.141	-0.080	-0.009	0.152	127.8	137.3	124.0	130.2	125.8	137.7	0.94	0.94	0.89	0.88	0.96	0.99	0.173141	1.000000	-
Rv0152c	PE2	35	173.7	173.2	170.5	176.0	170.8	191.6	-0.018	-0.022	-0.044	0.001	-0.042	0.119	207.2	202.0	217.0	207.7	196.0	223.5	0.84	0.86	0.79	0.85	0.87	0.86	0.994124	1.000000	-
Rv0153c	ptbB	11	114.1	177.3	78.4	214.1	194.7	141.9	-0.411	0.203	-0.925	0.468	0.334	-0.109	114.1	177.3	86.3	214.1	203.9	141.9	1.00	1.00	0.91	1.00	0.95	1.00	0.000015	0.000454	-
Rv0154c	fadE2	11	124.5	162.7	117.2	160.8	173.6	153.1	-0.246	0.126	-0.331	0.110	0.217	0.041	137.0	162.7	128.9	176.9	191.0	168.4	0.91	1.00	0.91	0.91	0.91	0.91	0.485257	1.000000	-
Rv0155	pntAa	10	392.8	395.8	402.5	425.1	407.1	303.0	0.018	0.030	0.053	0.131	0.069	-0.351	420.8	439.8	447.2	472.3	428.5	303.0	0.93	0.90	0.90	0.90	0.95	1.00	0.860139	1.000000	-
Rv0156	pntAb	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0157	pntB	10	239.6	251.9	230.6	224.2	247.9	299.4	-0.054	0.017	-0.108	-0.148	-0.006	0.261	256.7	279.9	271.3	240.2	247.9	332.6	0.93	0.90	0.85	0.93	1.00	0.90	0.725129	1.000000	-
Rv0158	-	15	247.9	279.3	213.6	238.4	233.7	277.0	-0.002	0.166	-0.213	-0.058	-0.086	0.155	293.6	279.3	237.3	243.8	233.7	277.0	0.84	1.00	0.90	0.98	1.00	1.00	0.058140	0.526026	-
Rv0159c	PE3	48	221.2	221.0	228.6	204.0	200.4	212.2	0.043	0.042	0.089	-0.071	-0.096	-0.016	237.7	238.4	258.2	220.9	209.2	223.9	0.93	0.93	0.89	0.92	0.96	0.95	0.937117	1.000000	-
Rv0160c	PE4	41	176.8	166.1	163.4	168.1	164.6	179.9	0.056	-0.031	-0.054	-0.014	-0.044	0.081	205.1	174.6	186.1	193.2	177.6	194.1	0.86	0.95	0.88	0.87	0.93	0.93	0.779550	1.000000	-
Rv0161	-	16	119.2	101.0	98.0	111.7	106.5	105.7	0.149	-0.080	-0.121	0.059	-0.006	-0.018	173.5	140.5	136.4	127.7	126.3	130.1	0.69	0.72	0.72	0.88	0.84	0.81	0.669941	1.000000	-
Rv0162c	adhE1	15	71.3	85.0	100.7	91.5	83.6	110.8	-0.324	-0.086	0.146	0.016	-0.107	0.278	82.2	94.4	125.8	111.3	96.5	110.8	0.87	0.90	0.80	0.82	0.87	1.00	0.163942	0.995236	-
Rv0163	-	9	184.8	165.7	177.3	171.2	187.0	191.4	0.041	-0.113	-0.018	-0.067	0.057	0.090	199.6	165.7	177.3	177.8	187.0	191.4	0.93	1.00	1.00	0.96	1.00	1.00	0.835645	1.000000	-
Rv0164	TB18.5	8	54.7	50.9	55.3	51.1	58.2	70.9	-0.051	-0.145	-0.038	-0.141	0.031	0.296	437.8	407.5	442.2	408.8	465.8	567.4	0.12	0.12	0.12	0.12	0.12	0.12	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0165c	-	6	180.4	136.2	160.5	169.8	181.9	119.0	0.186	-0.207	0.022	0.101	0.198	-0.395	180.4	148.6	175.1	179.8	181.9	119.0	1.00	0.92	0.92	0.94	1.00	1.00	0.767535	1.000000	-
Rv0166	fadD5	23	178.6	178.1	172.4	170.8	163.3	166.9	0.055	0.051	0.006	-0.007	-0.070	-0.039	186.7	182.0	193.4	181.3	170.7	174.5	0.96	0.98	0.89	0.94	0.96	0.96	0.977775	1.000000	-
Rv0167	yrbE1A	6	122.6	131.4	95.7	107.9	86.3	127.1	0.127	0.224	-0.215	-0.050	-0.356	0.177	137.9	131.4	127.6	114.2	129.5	127.1	0.89	1.00	0.75	0.94	0.67	1.00	0.258582	1.000000	-
Rv0168	yrbE1B	13	99.5	120.3	72.9	111.6	102.9	123.1	-0.075	0.188	-0.499	0.084	-0.028	0.219	102.1	120.3	78.9	117.7	102.9	133.3	0.97	1.00	0.92	0.95	1.00	0.92	0.214602	1.000000	-
Rv0169	mce1A	33	71.3	95.3	68.7	86.0	83.4	104.9	-0.237	0.157	-0.287	0.017	-0.025	0.289	96.7	106.6	103.1	110.6	105.9	119.4	0.74	0.89	0.67	0.78	0.79	0.88	0.140095	0.913603	-
Rv0170	mce1B	16	188.4	231.1	170.2	175.3	196.0	255.3	-0.103	0.185	-0.246	-0.204	-0.047	0.325	226.1	255.0	194.5	200.4	216.3	272.3	0.83	0.91	0.88	0.88	0.91	0.94	0.762300	1.000000	-
Rv0171	mce1C	23	183.3	253.4	159.1	194.4	223.7	238.6	-0.182	0.274	-0.381	-0.100	0.097	0.189	183.3	253.4	159.1	194.4	223.7	238.6	1.00	1.00	1.00	1.00	1.00	1.00	0.018959	0.227167	-
Rv0172	mce1D	31	88.3	115.3	87.1	95.3	105.2	134.1	-0.228	0.139	-0.246	-0.123	0.013	0.349	108.0	129.9	103.8	116.6	120.7	151.2	0.82	0.89	0.84	0.82	0.87	0.89	0.249675	1.000000	-
Rv0173	lprK	15	206.4	222.2	180.5	216.7	206.3	259.5	-0.059	0.045	-0.248	0.009	-0.060	0.264	216.0	238.1	186.7	216.7	221.0	278.1	0.96	0.93	0.97	1.00	0.93	0.93	0.373907	1.000000	-
Rv0174	mce1F	28	139.4	212.5	129.6	157.1	173.5	210.6	-0.281	0.310	-0.383	-0.114	0.025	0.297	146.4	220.4	139.6	162.9	173.5	218.4	0.95	0.96	0.93	0.96	1.00	0.96	0.002476	0.044299	-
Rv0175	-	8	176.9	230.8	118.2	171.6	190.1	217.4	-0.057	0.318	-0.618	-0.099	0.045	0.233	212.2	230.8	118.2	179.0	190.1	248.4	0.83	1.00	1.00	0.96	1.00	0.88	0.089290	0.696425	-
Rv0176	-	15	219.1	265.7	202.3	244.2	242.7	281.1	-0.144	0.129	-0.256	0.010	0.001	0.209	240.5	265.7	233.5	244.2	260.0	281.1	0.91	1.00	0.87	1.00	0.93	1.00	0.102385	0.747564	-
Rv0177	-	11	30.4	43.7	20.8	26.9	34.2	42.6	-0.105	0.354	-0.562	-0.258	0.042	0.321	71.7	68.6	45.8	52.1	53.8	58.6	0.42	0.64	0.45	0.52	0.64	0.73	0.764494	1.000000	-
Rv0178	-	11	150.8	130.5	85.4	107.6	135.5	132.9	0.274	0.073	-0.511	-0.193	0.126	0.099	171.6	130.5	104.4	126.9	135.5	132.9	0.88	1.00	0.82	0.85	1.00	1.00	0.111020	0.784724	-
Rv0179c	lprO	22	225.3	185.4	205.0	198.4	188.2	191.1	0.176	-0.099	0.043	-0.004	-0.078	-0.057	228.8	185.4	209.8	198.4	192.6	191.1	0.98	1.00	0.98	1.00	0.98	1.00	0.913460	1.000000	-
Rv0180c	-	27	41.5	43.2	37.7	41.5	49.4	45.3	-0.049	0.003	-0.172	-0.048	0.179	0.063	73.1	70.7	75.4	80.1	83.4	55.5	0.57	0.61	0.50	0.52	0.59	0.81	0.073481	0.618541	-
Rv0181c	-	14	144.7	159.5	148.7	152.1	149.7	147.0	-0.053	0.083	-0.015	0.017	-0.005	-0.031	155.8	159.5	148.7	159.7	155.3	147.0	0.93	1.00	1.00	0.95	0.96	1.00	0.672491	1.000000	-
Rv0182c	sigG	19	190.7	189.5	178.8	160.0	175.3	178.9	0.090	0.081	-0.001	-0.156	-0.028	0.000	194.1	194.7	183.6	160.0	175.3	178.9	0.98	0.97	0.97	1.00	1.00	1.00	0.856640	1.000000	-
Rv0183	-	14	291.0	260.3	270.6	248.1	218.8	251.5	0.178	0.019	0.075	-0.048	-0.226	-0.029	291.0	260.3	270.6	248.1	218.8	251.5	1.00	1.00	1.00	1.00	1.00	1.00	0.673720	1.000000	-
Rv0184	-	11	199.8	227.7	204.5	242.6	223.0	221.5	-0.135	0.050	-0.102	0.139	0.020	0.011	212.7	227.7	214.3	266.9	245.3	270.8	0.94	1.00	0.95	0.91	0.91	0.82	0.434668	1.000000	-
Rv0185	-	9	129.3	137.9	123.7	118.5	134.5	137.9	-0.011	0.079	-0.072	-0.132	0.044	0.079	174.5	177.3	171.2	177.7	201.7	190.9	0.74	0.78	0.72	0.67	0.67	0.72	0.985798	1.000000	-
Rv0186	bglS	32	119.0	121.0	127.2	109.5	110.7	126.4	0.001	0.023	0.093	-0.114	-0.100	0.084	141.1	129.0	135.7	119.5	120.0	132.6	0.84	0.94	0.94	0.92	0.92	0.95	0.705910	1.000000	-
Rv0187	-	7	315.9	334.1	315.7	280.1	246.1	222.6	0.142	0.222	0.142	-0.028	-0.212	-0.353	315.9	334.1	315.7	326.8	265.0	239.7	1.00	1.00	1.00	0.86	0.93	0.93	0.452803	1.000000	-
Rv0188	-	8	271.5	204.2	222.6	216.0	221.6	233.5	0.245	-0.157	-0.035	-0.078	-0.042	0.032	296.1	204.2	254.4	216.0	221.6	233.5	0.92	1.00	0.88	1.00	1.00	1.00	0.764258	1.000000	-
Rv0189c	ilvD	18	7.7	3.7	8.9	0.8	0.0	10.2	0.317	-0.230	0.447	-0.825	-1.033	0.571	34.8	26.8	107.4	13.9	0.0	36.7	0.22	0.14	0.08	0.06	0.00	0.28	0.000035	0.000982	-
Rv0190	-	3	504.0	654.1	406.2	681.9	450.1	536.8	-0.095	0.277	-0.404	0.337	-0.257	-0.005	504.0	654.1	406.2	681.9	450.1	536.8	1.00	1.00	1.00	1.00	1.00	1.00	0.853017	1.000000	-
Rv0191	-	17	480.6	427.0	447.8	421.8	423.7	403.5	0.145	-0.023	0.044	-0.041	-0.034	-0.104	532.8	468.3	507.5	488.9	480.2	403.5	0.90	0.91	0.88	0.86	0.88	1.00	0.596338	1.000000	-
Rv0192	-	11	262.4	247.2	278.0	215.4	257.0	273.0	0.038	-0.047	0.120	-0.241	0.008	0.094	270.6	247.2	278.0	215.4	257.0	273.0	0.97	1.00	1.00	1.00	1.00	1.00	0.845288	1.000000	-
Rv0192A	-	2	321.3	250.2	332.3	282.2	256.3	298.9	0.145	-0.210	0.192	-0.040	-0.176	0.042	321.3	250.2	332.3	282.2	256.3	298.9	1.00	1.00	1.00	1.00	1.00	1.00	0.285834	1.000000	-
Rv0193c	-	31	241.2	253.5	243.9	247.2	246.0	261.1	-0.044	0.026	-0.028	-0.009	-0.016	0.068	249.2	253.5	243.9	247.2	246.0	261.1	0.97	1.00	1.00	1.00	1.00	1.00	0.401656	1.000000	-
Rv0194	-	48	343.1	351.2	350.0	333.1	309.3	320.3	0.036	0.069	0.064	-0.006	-0.111	-0.062	350.4	358.7	365.2	340.2	319.3	327.1	0.98	0.98	0.96	0.98	0.97	0.98	0.996611	1.000000	-
Rv0195	-	6	416.8	400.4	378.4	360.1	367.4	384.4	0.115	0.057	-0.023	-0.094	-0.065	-0.001	416.8	400.4	378.4	360.1	367.4	384.4	1.00	1.00	1.00	1.00	1.00	1.00	0.999005	1.000000	-
Rv0196	-	7	254.8	250.1	213.8	222.8	222.0	234.5	0.127	0.100	-0.121	-0.063	-0.068	0.009	254.8	250.1	230.3	222.8	222.0	234.5	1.00	1.00	0.93	1.00	1.00	1.00	0.938631	1.000000	-
Rv0197	-	30	149.4	121.4	148.3	115.9	124.5	119.4	0.196	-0.093	0.186	-0.157	-0.058	-0.116	154.6	125.5	158.9	119.9	128.8	123.5	0.97	0.97	0.93	0.97	0.97	0.97	0.666890	1.000000	-
Rv0198c	-	39	71.2	63.9	65.1	68.2	74.3	80.2	0.013	-0.132	-0.106	-0.045	0.072	0.175	78.6	80.4	79.4	82.3	84.0	93.4	0.91	0.79	0.82	0.83	0.88	0.86	0.181302	1.000000	-
Rv0199	-	12	17.2	19.5	14.6	32.1	23.4	25.4	-0.287	-0.143	-0.462	0.457	0.070	0.171	36.3	42.5	43.9	68.0	80.2	40.7	0.47	0.46	0.33	0.47	0.29	0.62	0.136350	0.900720	-
Rv0200	-	7	105.3	134.3	90.4	209.3	179.5	116.6	-0.387	-0.050	-0.597	0.571	0.355	-0.246	130.0	188.0	126.5	293.0	251.3	163.2	0.81	0.71	0.71	0.71	0.71	0.71	0.192020	1.000000	-
Rv0201c	-	7	94.5	136.2	106.8	126.3	109.8	133.8	-0.305	0.200	-0.137	0.095	-0.098	0.176	94.5	136.2	106.8	126.3	109.8	133.8	1.00	1.00	1.00	1.00	1.00	1.00	0.495757	1.000000	-
Rv0202c	mmpL11	36	10.6	19.9	61.1	163.8	167.2	14.2	-2.323	-1.643	-0.234	1.117	1.146	-2.019	47.5	51.2	81.5	168.5	172.0	42.6	0.22	0.39	0.75	0.97	0.97	0.33	0.000000	0.000000	-
Rv0203	-	3	328.0	377.1	384.8	310.7	320.2	348.5	-0.071	0.127	0.156	-0.148	-0.105	0.015	328.0	377.1	384.8	310.7	320.2	348.5	1.00	1.00	1.00	1.00	1.00	1.00	0.829135	1.000000	-
Rv0204c	-	19	92.9	156.6	139.0	127.6	173.2	108.2	-0.495	0.229	0.062	-0.057	0.370	-0.285	103.8	156.6	146.7	139.8	173.2	111.2	0.89	1.00	0.95	0.91	1.00	0.97	0.013911	0.179632	-
Rv0205	-	12	238.8	196.8	199.4	203.5	205.3	237.6	0.158	-0.115	-0.097	-0.068	-0.056	0.151	268.7	224.9	208.1	209.3	205.3	248.0	0.89	0.88	0.96	0.97	1.00	0.96	0.609485	1.000000	-
Rv0206c	mmpL3	27	2.3	1.3	1.0	2.2	1.6	1.1	0.141	-0.060	-0.128	0.130	0.007	-0.114	61.6	36.0	28.1	60.1	44.2	29.7	0.04	0.04	0.04	0.04	0.04	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0207c	-	9	96.9	129.1	85.6	139.2	109.7	94.7	-0.164	0.232	-0.334	0.336	0.006	-0.195	174.5	154.9	154.1	197.7	164.5	131.2	0.56	0.83	0.56	0.70	0.67	0.72	0.905368	1.000000	-
Rv0208c	trmB	10	113.2	95.6	87.7	88.3	82.5	98.3	0.252	0.019	-0.099	-0.089	-0.182	0.057	141.5	106.3	134.9	101.9	97.1	115.7	0.80	0.90	0.65	0.87	0.85	0.85	0.858847	1.000000	-
Rv0209	-	14	238.3	251.8	263.5	270.0	221.2	233.7	-0.047	0.030	0.095	0.129	-0.152	-0.075	270.6	261.1	273.3	276.6	221.2	233.7	0.88	0.96	0.96	0.98	1.00	1.00	0.533953	1.000000	-
Rv0210	-	12	528.4	491.7	492.9	482.6	513.0	479.2	0.085	-0.018	-0.015	-0.045	0.042	-0.055	656.0	561.9	563.3	526.4	586.3	500.1	0.81	0.88	0.88	0.92	0.88	0.96	0.956820	1.000000	-
Rv0211	pckA	22	92.9	124.4	66.3	199.1	228.3	111.7	-0.537	-0.135	-0.995	0.522	0.715	-0.284	136.3	133.5	116.7	219.0	245.0	119.9	0.68	0.93	0.57	0.91	0.93	0.93	0.000000	0.000002	-
Rv0212c	nadR	6	135.7	146.7	123.7	132.5	134.1	119.7	0.038	0.146	-0.091	0.005	0.022	-0.137	143.7	146.7	123.7	140.3	146.3	119.7	0.94	1.00	1.00	0.94	0.92	1.00	0.919892	1.000000	-
Rv0213c	-	29	99.9	102.8	85.1	96.1	96.7	108.0	0.025	0.065	-0.194	-0.028	-0.020	0.132	126.0	126.9	114.8	121.2	116.8	125.3	0.79	0.81	0.74	0.79	0.83	0.86	0.994323	1.000000	-
Rv0214	fadD4	31	144.1	128.9	122.0	131.0	138.8	141.2	0.098	-0.057	-0.134	-0.035	0.046	0.069	155.8	133.2	137.5	135.3	148.4	150.9	0.92	0.97	0.89	0.97	0.94	0.94	0.701442	1.000000	-
Rv0215c	fadE3	14	158.0	149.0	161.0	166.0	164.8	179.7	-0.044	-0.126	-0.018	0.025	0.014	0.136	179.4	160.5	173.4	178.8	177.5	193.5	0.88	0.93	0.93	0.93	0.93	0.93	0.999242	1.000000	-
Rv0216	-	19	93.5	81.4	77.2	69.3	80.0	71.3	0.234	0.044	-0.027	-0.173	0.020	-0.135	133.3	96.7	88.9	80.6	86.8	71.3	0.70	0.84	0.87	0.86	0.92	1.00	0.002139	0.038623	-
Rv0217c	lipW	19	196.6	194.3	180.2	174.9	168.1	165.3	0.125	0.109	0.002	-0.040	-0.095	-0.119	228.7	205.1	195.6	178.0	172.6	174.5	0.86	0.95	0.92	0.98	0.97	0.95	0.505466	1.000000	-
Rv0218	-	18	85.1	60.6	67.1	62.1	58.7	69.5	0.320	-0.139	-0.001	-0.105	-0.180	0.045	106.9	68.1	75.5	76.2	66.1	73.6	0.80	0.89	0.89	0.81	0.89	0.94	0.296510	1.000000	-
Rv0219	-	11	203.6	150.6	163.2	147.3	156.4	159.1	0.309	-0.114	-0.001	-0.145	-0.060	-0.037	216.7	157.8	163.2	156.8	156.4	175.0	0.94	0.95	1.00	0.94	1.00	0.91	0.527608	1.000000	-
Rv0220	lipC	22	94.0	104.8	109.3	112.5	89.8	107.4	-0.125	0.024	0.082	0.122	-0.188	0.059	121.7	121.4	129.9	123.7	106.8	115.3	0.77	0.86	0.84	0.91	0.84	0.93	0.784163	1.000000	-
Rv0221	-	25	177.5	155.8	180.6	153.6	152.0	162.8	0.113	-0.070	0.137	-0.089	-0.103	-0.008	195.8	169.3	200.6	174.6	161.7	169.6	0.91	0.92	0.90	0.88	0.94	0.96	0.943842	1.000000	-
Rv0222	echA1	8	72.6	67.9	85.2	69.2	72.2	76.0	-0.023	-0.113	0.194	-0.088	-0.031	0.038	79.2	67.9	90.9	69.2	72.2	81.0	0.92	1.00	0.94	1.00	1.00	0.94	0.732863	1.000000	-
Rv0223c	-	22	64.3	73.8	63.1	54.3	62.5	69.4	-0.006	0.180	-0.031	-0.231	-0.043	0.097	81.6	95.5	79.3	74.6	72.4	76.3	0.79	0.77	0.80	0.73	0.86	0.91	0.579818	1.000000	-
Rv0224c	-	14	0.0	0.0	0.0	0.3	0.0	0.0	-0.015	-0.015	-0.015	0.072	-0.015	-0.015	0.0	0.0	0.0	13.0	0.0	0.0	0.00	0.00	0.00	0.02	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0225	-	20	0.0	0.0	0.8	0.0	0.0	0.0	-0.037	-0.037	0.171	-0.037	-0.037	-0.037	0.0	0.0	31.0	0.0	0.0	0.0	0.00	0.00	0.03	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0226c	-	23	0.0	0.2	0.0	0.4	0.6	0.2	-0.069	-0.007	-0.069	0.049	0.091	-0.002	0.0	10.0	0.0	14.6	27.0	10.8	0.00	0.02	0.00	0.03	0.02	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0227c	-	21	0.0	0.0	0.0	0.0	0.7	0.0	-0.033	-0.033	-0.033	-0.033	0.154	-0.033	0.0	0.0	0.0	0.0	14.5	0.0	0.00	0.00	0.00	0.00	0.05	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0228	-	13	0.0	0.8	0.0	0.0	0.6	0.4	-0.081	0.125	-0.081	-0.081	0.071	0.034	0.0	10.0	0.0	0.0	14.5	10.8	0.00	0.08	0.00	0.00	0.04	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0229c	-	16	108.7	101.0	86.9	95.7	95.4	121.1	0.094	-0.006	-0.212	-0.080	-0.085	0.244	130.4	107.8	107.0	109.4	109.0	129.2	0.83	0.94	0.81	0.88	0.88	0.94	0.908499	1.000000	-
Rv0230c	php	13	348.3	334.4	326.2	304.0	314.3	328.8	0.094	0.036	0.001	-0.099	-0.052	0.012	367.2	378.0	326.2	312.0	340.5	356.3	0.95	0.88	1.00	0.97	0.92	0.92	0.684980	1.000000	-
Rv0231	fadE4	33	150.5	171.1	155.7	147.5	160.8	166.1	-0.073	0.106	-0.026	-0.101	0.019	0.065	158.5	171.1	163.1	150.6	160.8	166.1	0.95	1.00	0.95	0.98	1.00	1.00	0.198176	1.000000	-
Rv0232	-	9	346.9	323.8	344.1	317.8	318.5	314.2	0.082	-0.016	0.070	-0.043	-0.040	-0.059	346.9	323.8	344.1	317.8	318.5	314.2	1.00	1.00	1.00	1.00	1.00	1.00	0.997770	1.000000	-
Rv0233	nrdB	11	158.4	149.7	156.4	157.9	172.9	174.6	-0.028	-0.108	-0.046	-0.033	0.094	0.108	158.4	149.7	172.1	157.9	172.9	174.6	1.00	1.00	0.91	1.00	1.00	1.00	0.626018	1.000000	-
Rv0234c	gabD1	19	79.8	87.3	73.3	74.3	72.1	73.9	0.053	0.174	-0.064	-0.045	-0.085	-0.051	119.7	107.0	111.3	108.6	94.5	108.0	0.67	0.82	0.66	0.68	0.76	0.68	0.969370	1.000000	-
Rv0235c	-	22	53.1	55.2	67.0	48.2	58.9	55.6	-0.078	-0.028	0.232	-0.205	0.059	-0.017	66.2	60.7	77.6	61.2	61.7	64.4	0.80	0.91	0.86	0.79	0.95	0.86	0.399484	1.000000	-
Rv0236c	-	34	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0236A	-	1	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0237	lpqI	12	177.4	179.4	145.8	169.0	145.8	136.9	0.153	0.169	-0.121	0.085	-0.122	-0.209	212.8	215.3	159.1	202.8	159.0	156.4	0.83	0.83	0.92	0.83	0.92	0.88	0.915683	1.000000	-
Rv0238	-	11	126.3	138.3	99.1	358.8	359.9	168.4	-0.701	-0.575	-1.036	0.769	0.773	-0.300	198.5	169.1	128.2	438.5	416.7	205.8	0.64	0.82	0.77	0.82	0.86	0.82	0.000001	0.000040	-
Rv0239	-	2	139.3	117.3	147.1	129.9	120.9	134.2	0.081	-0.158	0.157	-0.017	-0.116	0.029	139.3	117.3	147.1	129.9	120.9	134.2	1.00	1.00	1.00	1.00	1.00	1.00	0.994584	1.000000	-
Rv0240	-	6	202.4	255.4	264.2	223.2	204.1	252.6	-0.202	0.126	0.174	-0.064	-0.191	0.110	202.4	255.4	264.2	223.2	204.1	252.6	1.00	1.00	1.00	1.00	1.00	1.00	0.750739	1.000000	-
Rv0241c	-	13	48.3	74.7	60.1	46.7	57.7	47.1	-0.188	0.391	0.100	-0.232	0.045	-0.223	85.7	92.4	92.0	50.6	78.9	64.4	0.56	0.81	0.65	0.92	0.73	0.73	0.010153	0.140666	-
Rv0242c	fabG	11	45.9	83.4	75.3	58.3	59.7	48.4	-0.394	0.404	0.265	-0.079	-0.047	-0.324	63.1	91.8	87.2	64.1	73.0	50.7	0.73	0.91	0.86	0.91	0.82	0.95	0.161806	0.987163	-
Rv0243	fadA2	18	89.8	99.8	105.0	59.6	78.6	65.5	0.106	0.251	0.321	-0.447	-0.075	-0.320	101.0	108.9	111.1	64.4	78.6	69.4	0.89	0.92	0.94	0.93	1.00	0.94	0.040425	0.410422	-
Rv0244c	fadE5	21	297.5	257.3	250.6	213.4	220.9	250.8	0.255	0.050	0.012	-0.214	-0.166	0.013	297.5	257.3	250.6	213.4	220.9	250.8	1.00	1.00	1.00	1.00	1.00	1.00	0.382169	1.000000	-
Rv0245	-	4	124.4	253.5	103.2	139.7	162.5	215.9	-0.407	0.592	-0.664	-0.246	-0.035	0.365	124.4	253.5	103.2	139.7	162.5	215.9	1.00	1.00	1.00	1.00	1.00	1.00	0.089067	0.696425	-
Rv0246	-	29	78.3	79.9	79.5	74.2	67.1	89.7	0.003	0.030	0.024	-0.069	-0.205	0.188	109.9	94.5	107.2	107.6	79.4	102.0	0.71	0.84	0.74	0.69	0.84	0.88	0.275560	1.000000	-
Rv0247c	-	9	55.5	52.6	56.9	42.6	47.3	53.1	0.103	0.031	0.136	-0.244	-0.107	0.045	78.8	72.8	78.8	54.7	53.2	56.2	0.70	0.72	0.72	0.78	0.89	0.94	0.550477	1.000000	-
Rv0248c	sdhA	33	121.5	108.8	101.7	103.5	100.6	102.4	0.183	0.031	-0.062	-0.038	-0.078	-0.053	129.3	117.8	111.9	105.7	102.1	105.6	0.94	0.92	0.91	0.98	0.98	0.97	0.468823	1.000000	-
Rv0249c	-	22	97.6	92.4	90.2	80.8	74.6	91.4	0.144	0.069	0.037	-0.114	-0.222	0.054	99.1	104.3	99.3	84.6	84.2	95.8	0.98	0.89	0.91	0.95	0.89	0.95	0.306001	1.000000	-
Rv0250c	-	3	74.8	71.1	50.1	55.6	89.7	122.1	-0.044	-0.111	-0.578	-0.440	0.204	0.628	74.8	71.1	60.1	55.6	89.7	122.1	1.00	1.00	0.83	1.00	1.00	1.00	0.354958	1.000000	-
Rv0251c	hsp	5	447.0	323.1	365.5	349.5	316.7	319.0	0.335	-0.128	0.048	-0.016	-0.156	-0.146	479.0	403.9	406.1	349.5	316.7	319.0	0.93	0.80	0.90	1.00	1.00	1.00	0.809401	1.000000	-
Rv0252	nirB	38	134.8	134.1	144.1	142.7	142.9	123.5	-0.023	-0.030	0.070	0.056	0.059	-0.144	149.2	141.6	156.4	152.0	157.4	138.0	0.90	0.95	0.92	0.94	0.91	0.89	0.925276	1.000000	-
Rv0253	nirD	6	96.8	76.2	74.4	96.5	69.8	94.6	0.182	-0.144	-0.177	0.179	-0.262	0.151	96.8	83.2	74.4	96.5	83.8	94.6	1.00	0.92	1.00	1.00	0.83	1.00	0.391291	1.000000	-
Rv0254c	cobU	5	271.3	244.7	290.7	241.8	263.3	267.4	0.043	-0.103	0.141	-0.120	0.001	0.022	271.3	244.7	290.7	241.8	263.3	267.4	1.00	1.00	1.00	1.00	1.00	1.00	0.987146	1.000000	-
Rv0255c	cobQ1	13	236.7	202.8	214.6	216.8	215.4	192.5	0.148	-0.070	0.009	0.024	0.015	-0.143	256.5	219.7	232.5	234.8	215.4	208.6	0.92	0.92	0.92	0.92	1.00	0.92	0.952419	1.000000	-
Rv0256c	PPE2	30	142.2	141.1	154.7	231.4	206.4	128.6	-0.228	-0.238	-0.110	0.456	0.294	-0.368	166.2	159.8	171.9	254.0	217.2	140.3	0.86	0.88	0.90	0.91	0.95	0.92	0.023231	0.265593	-
Rv0257	-	3	276.4	303.2	257.1	297.9	290.0	205.2	0.025	0.156	-0.078	0.131	0.093	-0.396	276.4	303.2	257.1	297.9	290.0	205.2	1.00	1.00	1.00	1.00	1.00	1.00	0.759735	1.000000	-
Rv0258c	-	6	76.5	58.8	69.2	42.1	75.8	74.7	0.195	-0.158	0.060	-0.596	0.182	0.164	114.7	70.5	118.6	50.5	90.9	89.7	0.67	0.83	0.58	0.83	0.83	0.83	0.348983	1.000000	-
Rv0259c	-	7	90.9	96.1	59.0	77.4	86.9	81.6	0.141	0.217	-0.443	-0.078	0.079	-0.007	106.0	122.3	75.1	90.3	121.6	114.2	0.86	0.79	0.79	0.86	0.71	0.71	0.613844	1.000000	-
Rv0260c	-	18	101.9	114.1	107.6	100.2	87.2	94.4	0.014	0.169	0.089	-0.010	-0.199	-0.092	144.8	146.7	138.4	117.6	101.3	106.2	0.70	0.78	0.78	0.85	0.86	0.89	0.585249	1.000000	-
Rv0261c	narK3	22	124.4	99.7	125.9	106.6	109.5	110.5	0.136	-0.170	0.152	-0.077	-0.041	-0.028	139.1	109.6	131.9	121.3	120.4	124.7	0.89	0.91	0.95	0.88	0.91	0.89	0.898018	1.000000	-
Rv0262c	aac	6	148.3	129.6	147.3	153.1	132.1	120.2	0.096	-0.091	0.086	0.140	-0.065	-0.197	148.3	129.6	176.7	153.1	132.1	120.2	1.00	1.00	0.83	1.00	1.00	1.00	0.425638	1.000000	-
Rv0263c	-	15	67.7	80.7	77.3	56.3	73.7	78.3	-0.090	0.148	0.091	-0.334	0.024	0.107	89.6	96.8	85.9	79.2	81.8	87.0	0.76	0.83	0.90	0.71	0.90	0.90	0.534946	1.000000	-
Rv0264c	-	9	178.3	143.3	181.3	166.0	170.0	134.5	0.133	-0.173	0.156	0.032	0.065	-0.262	185.2	161.2	181.3	166.0	170.0	151.3	0.96	0.89	1.00	1.00	1.00	0.89	0.463024	1.000000	-
Rv0265c	-	9	169.4	194.8	143.1	179.4	178.0	177.0	-0.035	0.162	-0.271	0.046	0.035	0.027	169.4	194.8	143.1	179.4	178.0	177.0	1.00	1.00	1.00	1.00	1.00	1.00	0.860411	1.000000	-
Rv0266c	oplA	37	280.0	258.5	257.8	246.2	246.3	251.8	0.123	0.009	0.006	-0.060	-0.059	-0.028	298.8	273.3	276.5	253.0	253.1	266.2	0.94	0.95	0.93	0.97	0.97	0.95	0.957253	1.000000	-
Rv0267	narU	11	192.8	185.0	172.3	168.5	171.5	206.3	0.075	0.017	-0.082	-0.113	-0.089	0.170	219.4	185.0	172.3	168.5	171.5	206.3	0.88	1.00	1.00	1.00	1.00	1.00	0.187994	1.000000	-
Rv0268c	-	12	354.9	354.2	347.0	353.4	325.5	355.7	0.026	0.023	-0.006	0.020	-0.097	0.029	354.9	354.2	347.0	353.4	325.5	355.7	1.00	1.00	1.00	1.00	1.00	1.00	0.996254	1.000000	-
Rv0269c	-	10	260.4	259.8	203.2	208.0	207.3	203.2	0.215	0.212	-0.135	-0.102	-0.107	-0.135	269.4	259.8	213.9	249.6	230.3	203.2	0.97	1.00	0.95	0.83	0.90	1.00	0.344124	1.000000	-
Rv0270	fadD2	21	335.9	173.7	330.7	84.4	145.7	121.2	0.743	-0.188	0.721	-1.188	-0.434	-0.690	346.9	182.4	338.7	91.7	153.0	127.3	0.97	0.95	0.98	0.92	0.95	0.95	0.000000	0.000000	-
Rv0271c	fadE6	25	197.1	207.4	200.7	202.9	203.0	189.7	-0.022	0.050	0.004	0.020	0.020	-0.075	217.3	230.4	204.8	211.4	203.0	189.7	0.91	0.90	0.98	0.96	1.00	1.00	0.093641	0.714391	-
Rv0272c	-	15	76.8	88.0	85.9	78.1	76.3	87.4	-0.091	0.095	0.062	-0.067	-0.099	0.086	107.9	110.0	103.0	100.4	99.5	97.1	0.71	0.80	0.83	0.78	0.77	0.90	0.944957	1.000000	-
Rv0273c	-	15	162.4	143.2	137.5	129.2	144.2	140.8	0.179	0.003	-0.053	-0.140	0.013	-0.021	178.2	153.4	158.7	166.1	144.2	145.6	0.91	0.93	0.87	0.78	1.00	0.97	0.183938	1.000000	-
Rv0274	-	8	83.8	82.0	76.3	78.0	69.8	75.6	0.105	0.075	-0.023	0.008	-0.144	-0.035	111.8	109.3	93.9	89.2	85.9	80.7	0.75	0.75	0.81	0.88	0.81	0.94	0.924312	1.000000	-
Rv0275c	-	7	87.8	86.7	107.8	95.5	87.6	98.3	-0.093	-0.109	0.189	0.022	-0.096	0.062	108.4	134.9	125.8	133.7	136.2	137.7	0.81	0.64	0.86	0.71	0.64	0.71	0.825033	1.000000	-
Rv0276	-	17	161.8	163.5	141.0	165.7	173.3	189.5	-0.035	-0.019	-0.226	-0.001	0.062	0.188	165.0	168.5	154.7	169.0	178.5	195.3	0.98	0.97	0.91	0.98	0.97	0.97	0.803670	1.000000	-
Rv0277c	-	5	128.2	110.2	117.8	118.3	116.6	121.0	0.107	-0.102	-0.010	-0.005	-0.024	0.027	160.3	137.8	196.3	147.8	166.6	151.3	0.80	0.80	0.60	0.80	0.70	0.80	0.992844	1.000000	-
Rv0278c	PE_PGRS3	24	301.3	287.6	292.6	279.2	241.9	243.0	0.133	0.067	0.092	0.025	-0.177	-0.172	374.0	336.7	326.6	340.8	283.2	271.2	0.81	0.85	0.90	0.82	0.85	0.90	0.904874	1.000000	-
Rv0279c	PE_PGRS4	17	353.4	313.0	350.1	298.4	277.7	293.2	0.167	-0.006	0.153	-0.074	-0.176	-0.098	353.4	313.0	350.1	298.4	295.0	293.2	1.00	1.00	1.00	1.00	0.94	1.00	0.496779	1.000000	-
Rv0280	PPE3	26	119.4	259.8	119.9	322.8	299.3	230.2	-0.888	0.202	-0.883	0.510	0.402	0.031	194.1	270.1	159.8	327.0	305.2	234.7	0.62	0.96	0.75	0.99	0.98	0.98	0.000000	0.000000	-
Rv0281	-	12	362.2	404.6	385.7	376.2	355.9	382.4	-0.060	0.098	0.029	-0.006	-0.085	0.017	395.2	441.4	402.4	410.4	388.2	417.2	0.92	0.92	0.96	0.92	0.92	0.92	0.995842	1.000000	-
Rv0282	-	19	1.9	0.8	0.0	0.3	0.0	4.0	0.171	-0.086	-0.303	-0.232	-0.303	0.545	18.5	10.3	0.0	14.4	0.0	21.7	0.11	0.08	0.00	0.02	0.00	0.18	0.003941	0.064710	-
Rv0283	-	22	0.3	0.2	0.0	0.0	0.4	1.4	-0.015	-0.046	-0.110	-0.110	0.003	0.248	22.6	10.0	0.0	0.0	18.0	10.3	0.02	0.02	0.00	0.00	0.02	0.14	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0284	-	57	0.6	0.0	0.0	0.1	0.0	1.5	0.063	-0.104	-0.104	-0.080	-0.104	0.285	26.2	0.0	0.0	14.4	0.0	14.7	0.02	0.00	0.00	0.01	0.00	0.11	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0285	PE5	5	0.0	0.0	0.0	0.0	0.0	2.0	-0.094	-0.094	-0.094	-0.094	-0.094	0.396	0.0	0.0	0.0	0.0	0.0	10.1	0.00	0.00	0.00	0.00	0.00	0.20	0.214626	1.000000	-
Rv0286	PPE4	28	8.5	0.5	0.4	48.6	57.9	41.6	-1.210	-2.496	-2.520	0.777	1.008	0.576	23.9	10.1	25.2	151.2	162.1	70.6	0.36	0.05	0.02	0.32	0.36	0.59	0.000000	0.000000	-
Rv0287	esxG	3	1.8	0.0	0.0	0.0	0.0	1.6	0.294	-0.154	-0.154	-0.154	-0.154	0.239	16.4	0.0	0.0	0.0	0.0	9.4	0.11	0.00	0.00	0.00	0.00	0.17	0.583399	1.000000	-
Rv0288	esxH	7	1.1	0.0	0.0	0.0	0.0	2.7	0.111	-0.170	-0.170	-0.170	-0.170	0.450	22.6	0.0	0.0	0.0	0.0	12.5	0.05	0.00	0.00	0.00	0.00	0.21	0.140502	0.914522	-
Rv0289	-	13	3.6	4.7	0.0	0.0	0.0	7.6	0.166	0.349	-0.613	-0.613	-0.613	0.716	34.9	24.7	0.0	0.0	0.0	17.9	0.10	0.19	0.00	0.00	0.00	0.42	0.000003	0.000111	-
Rv0290	-	18	1.6	0.3	0.0	0.0	0.0	6.2	0.062	-0.267	-0.345	-0.345	-0.345	0.819	22.1	10.0	0.0	0.0	0.0	22.3	0.07	0.03	0.00	0.00	0.00	0.28	0.000026	0.000755	-
Rv0291	mycP3	12	32.1	3.5	1.3	0.0	0.4	26.1	1.253	-0.879	-1.306	-1.638	-1.533	1.001	67.9	27.7	31.0	0.0	9.0	44.8	0.47	0.12	0.04	0.00	0.04	0.58	0.000000	0.000000	-
Rv0292	-	16	19.7	5.4	3.9	2.6	4.6	15.7	0.856	-0.388	-0.616	-0.840	-0.512	0.598	63.0	28.9	62.5	42.0	73.2	25.1	0.31	0.19	0.06	0.06	0.06	0.62	0.000000	0.000000	-
Rv0293c	-	26	198.6	230.3	186.8	230.4	185.6	219.4	-0.068	0.140	-0.155	0.141	-0.164	0.072	231.3	249.5	220.7	239.6	185.6	253.5	0.86	0.92	0.85	0.96	1.00	0.87	0.036541	0.380674	-
Rv0294	tam	13	177.7	228.8	197.3	213.0	230.4	198.9	-0.220	0.137	-0.072	0.035	0.147	-0.061	192.5	258.6	205.2	213.0	239.7	198.9	0.92	0.88	0.96	1.00	0.96	1.00	0.466917	1.000000	-
Rv0295c	-	7	219.1	198.6	179.8	195.5	200.3	257.0	0.070	-0.068	-0.207	-0.090	-0.056	0.296	255.6	198.6	193.7	195.5	233.6	299.8	0.86	1.00	0.93	1.00	0.86	0.86	0.259489	1.000000	-
Rv0296c	-	42	153.0	145.1	142.3	157.2	151.8	153.0	0.023	-0.050	-0.078	0.062	0.013	0.024	183.5	171.7	175.7	181.7	174.7	181.0	0.83	0.85	0.81	0.87	0.87	0.85	0.998766	1.000000	-
Rv0297	PE_PGRS5	14	253.5	227.5	248.7	232.0	213.4	216.6	0.126	-0.027	0.099	0.000	-0.118	-0.097	287.8	289.5	290.1	263.3	284.5	288.8	0.88	0.79	0.86	0.88	0.75	0.75	0.735410	1.000000	-
Rv0298	-	5	327.1	312.7	288.6	341.9	326.5	272.4	0.069	0.005	-0.108	0.132	0.067	-0.190	327.1	312.7	288.6	341.9	326.5	302.7	1.00	1.00	1.00	1.00	1.00	0.90	0.926552	1.000000	-
Rv0299	-	2	616.6	700.6	595.2	494.9	438.6	343.3	0.212	0.395	0.162	-0.102	-0.274	-0.623	616.6	700.6	595.2	494.9	438.6	343.3	1.00	1.00	1.00	1.00	1.00	1.00	0.752177	1.000000	-
Rv0300	-	4	340.0	394.2	368.3	345.5	328.3	326.1	-0.043	0.168	0.071	-0.020	-0.093	-0.102	340.0	394.2	368.3	345.5	328.3	326.1	1.00	1.00	1.00	1.00	1.00	1.00	0.998844	1.000000	-
Rv0301	-	7	403.4	401.0	369.1	352.8	349.8	365.7	0.109	0.101	-0.017	-0.082	-0.094	-0.031	403.4	401.0	369.1	352.8	349.8	365.7	1.00	1.00	1.00	1.00	1.00	1.00	0.991127	1.000000	-
Rv0302	-	8	250.9	261.1	274.4	223.9	242.5	243.2	0.009	0.065	0.136	-0.152	-0.039	-0.035	261.8	261.1	274.4	223.9	242.5	243.2	0.96	1.00	1.00	1.00	1.00	1.00	0.954406	1.000000	-
Rv0303	-	12	252.1	257.5	209.9	233.6	268.5	267.4	0.022	0.052	-0.236	-0.085	0.112	0.106	252.1	257.5	209.9	233.6	268.5	267.4	1.00	1.00	1.00	1.00	1.00	1.00	0.707506	1.000000	-
Rv0304c	PPE5	118	79.0	85.2	73.2	79.2	85.1	90.4	-0.051	0.052	-0.153	-0.048	0.050	0.133	116.0	109.3	106.0	115.8	116.7	112.9	0.68	0.78	0.69	0.68	0.73	0.80	0.222131	1.000000	-
Rv0305c	PPE6	53	47.9	57.0	55.3	63.4	61.7	64.7	-0.261	-0.031	-0.071	0.111	0.075	0.138	67.4	73.7	81.5	83.4	78.9	80.7	0.71	0.77	0.68	0.76	0.78	0.80	0.546277	1.000000	-
Rv0306	-	6	373.4	311.0	364.5	370.4	313.3	330.4	0.117	-0.143	0.083	0.106	-0.132	-0.057	373.4	311.0	364.5	370.4	313.3	330.4	1.00	1.00	1.00	1.00	1.00	1.00	0.985591	1.000000	-
Rv0307c	-	8	153.9	154.4	149.0	131.3	142.8	179.3	0.019	0.024	-0.026	-0.202	-0.085	0.233	153.9	154.4	149.0	131.3	142.8	179.3	1.00	1.00	1.00	1.00	1.00	1.00	0.874734	1.000000	-
Rv0308	-	15	142.7	174.6	164.8	155.3	164.8	175.8	-0.186	0.097	0.015	-0.068	0.015	0.106	178.4	174.6	170.5	166.4	176.6	175.8	0.80	1.00	0.97	0.93	0.93	1.00	0.092516	0.708520	-
Rv0309	-	11	109.4	129.9	133.3	115.9	128.8	129.6	-0.179	0.059	0.095	-0.099	0.047	0.056	128.9	129.9	139.6	131.9	134.9	135.8	0.85	1.00	0.95	0.88	0.95	0.95	0.733548	1.000000	-
Rv0310c	-	12	76.8	67.9	86.7	73.4	85.3	82.4	-0.034	-0.200	0.131	-0.095	0.108	0.062	98.7	77.6	104.0	88.1	93.0	89.9	0.78	0.88	0.83	0.83	0.92	0.92	0.975085	1.000000	-
Rv0311	-	15	102.7	115.0	86.1	96.9	98.9	105.4	0.025	0.181	-0.217	-0.055	-0.026	0.061	105.0	119.0	89.0	106.3	102.3	109.0	0.98	0.97	0.97	0.91	0.97	0.97	0.842538	1.000000	-
Rv0312	-	19	32.7	38.0	46.7	52.1	32.2	38.0	-0.254	-0.064	0.203	0.345	-0.275	-0.064	56.5	68.8	71.0	90.0	55.5	68.7	0.58	0.55	0.66	0.58	0.58	0.55	0.459056	1.000000	-
Rv0313	-	4	605.7	623.4	547.8	603.8	602.8	603.5	0.019	0.060	-0.125	0.014	0.012	0.014	605.7	623.4	547.8	603.8	602.8	603.5	1.00	1.00	1.00	1.00	1.00	1.00	0.999655	1.000000	-
Rv0314c	-	7	397.4	341.3	297.5	326.7	265.4	329.3	0.281	0.064	-0.131	0.002	-0.293	0.013	397.4	341.3	378.7	326.7	285.8	329.3	1.00	1.00	0.79	1.00	0.93	1.00	0.288463	1.000000	-
Rv0315	-	8	118.4	117.2	102.0	143.5	133.3	117.0	-0.041	-0.054	-0.246	0.227	0.124	-0.057	135.3	134.0	116.6	164.0	152.3	133.7	0.88	0.88	0.88	0.88	0.88	0.88	0.926446	1.000000	-
Rv0316	-	8	380.5	293.9	309.6	264.6	288.1	252.8	0.346	-0.021	0.053	-0.170	-0.049	-0.235	456.6	361.7	381.0	302.4	288.1	311.1	0.83	0.81	0.81	0.88	1.00	0.81	0.684324	1.000000	-
Rv0317c	glpQ2	13	388.5	335.5	371.0	352.8	337.3	328.8	0.139	-0.069	0.073	0.002	-0.062	-0.098	388.5	363.5	371.0	352.8	350.8	328.8	1.00	0.92	1.00	1.00	0.96	1.00	0.602947	1.000000	-
Rv0318c	-	6	353.6	357.5	325.5	343.8	336.3	340.7	0.044	0.059	-0.074	0.004	-0.028	-0.009	353.6	357.5	325.5	343.8	336.3	340.7	1.00	1.00	1.00	1.00	1.00	1.00	0.999483	1.000000	-
Rv0319	pcp	6	245.1	244.5	206.2	258.3	215.0	256.9	0.043	0.040	-0.200	0.118	-0.142	0.110	259.5	244.5	206.2	258.3	234.5	256.9	0.94	1.00	1.00	1.00	0.92	1.00	0.904497	1.000000	-
Rv0320	-	12	208.1	207.7	187.7	188.3	202.2	208.9	0.053	0.050	-0.093	-0.088	0.012	0.058	208.1	207.7	187.7	205.5	220.6	208.9	1.00	1.00	1.00	0.92	0.92	1.00	0.274098	1.000000	-
Rv0321	dcd	4	124.6	138.7	129.6	109.0	86.2	132.5	0.051	0.200	0.105	-0.134	-0.456	0.137	166.1	185.0	148.1	145.3	98.5	151.5	0.75	0.75	0.88	0.75	0.88	0.88	0.902984	1.000000	-
Rv0322	udgA	21	116.0	121.1	112.3	114.2	123.4	126.1	-0.034	0.025	-0.078	-0.055	0.052	0.082	132.8	124.0	124.2	119.9	129.6	129.2	0.87	0.98	0.90	0.95	0.95	0.98	0.780209	1.000000	-
Rv0323c	-	11	257.8	245.2	243.0	210.6	239.3	201.0	0.144	0.073	0.061	-0.142	0.039	-0.207	293.4	299.6	281.4	231.6	309.7	245.6	0.88	0.82	0.86	0.91	0.77	0.82	0.838433	1.000000	-
Rv0324	-	11	250.8	228.5	265.8	266.5	267.7	216.1	0.009	-0.123	0.091	0.095	0.101	-0.201	275.9	228.5	307.7	266.5	294.4	237.7	0.91	1.00	0.86	1.00	0.91	0.91	0.373449	1.000000	-
Rv0325	-	5	242.4	192.7	220.0	185.6	212.1	211.3	0.198	-0.125	0.061	-0.179	0.009	0.004	279.7	192.7	220.0	198.8	212.1	211.3	0.87	1.00	1.00	0.93	1.00	1.00	0.881827	1.000000	-
Rv0326	-	9	151.1	150.1	168.8	164.5	175.4	156.6	-0.089	-0.099	0.065	0.029	0.120	-0.040	163.2	192.9	202.5	164.5	197.4	156.6	0.93	0.78	0.83	1.00	0.89	1.00	0.199559	1.000000	-
Rv0327c	cyp135A1	21	55.3	58.5	57.2	57.8	64.4	65.3	-0.102	-0.029	-0.058	-0.044	0.100	0.119	69.7	66.4	82.9	74.4	69.4	70.4	0.79	0.88	0.69	0.78	0.93	0.93	0.278723	1.000000	-
Rv0328	-	11	251.4	223.2	216.8	177.5	174.5	188.6	0.286	0.118	0.077	-0.205	-0.229	-0.119	267.6	245.5	280.6	195.2	213.3	207.5	0.94	0.91	0.77	0.91	0.82	0.91	0.687204	1.000000	-
Rv0329c	-	8	174.8	207.8	182.1	169.8	154.3	175.6	-0.021	0.222	0.037	-0.062	-0.195	-0.014	209.7	277.1	242.8	254.7	190.0	187.3	0.83	0.75	0.75	0.67	0.81	0.94	0.753902	1.000000	-
Rv0330c	-	9	307.8	307.4	295.5	302.1	295.6	317.0	0.016	0.015	-0.041	-0.010	-0.041	0.058	307.8	307.4	332.5	302.1	295.6	317.0	1.00	1.00	0.89	1.00	1.00	1.00	0.703673	1.000000	-
Rv0331	-	18	147.2	139.2	127.5	138.5	132.6	130.4	0.111	0.033	-0.089	0.027	-0.035	-0.057	169.1	156.6	143.4	143.9	144.6	130.4	0.87	0.89	0.89	0.96	0.92	1.00	0.479570	1.000000	-
Rv0332	-	8	283.8	270.1	281.4	243.6	285.9	244.3	0.080	0.010	0.068	-0.136	0.090	-0.132	283.8	270.1	281.4	243.6	285.9	244.3	1.00	1.00	1.00	1.00	1.00	1.00	0.977881	1.000000	-
Rv0333	-	4	194.3	189.5	184.7	222.5	184.1	183.0	0.010	-0.026	-0.062	0.200	-0.067	-0.075	233.2	189.5	246.2	267.1	245.5	209.2	0.83	1.00	0.75	0.83	0.75	0.88	0.956892	1.000000	-
Rv0334	rmlA	15	0.0	0.0	1.0	0.0	0.3	0.0	-0.063	-0.063	0.208	-0.063	0.021	-0.063	0.0	0.0	31.0	0.0	9.0	0.0	0.00	0.00	0.03	0.00	0.03	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0335c	PE6	1	63.9	35.6	18.9	0.0	0.0	0.0	1.477	0.715	-0.047	-2.307	-2.307	-2.307	63.9	35.6	37.9	0.0	0.0	0.0	1.00	1.00	0.50	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0336	-	18	321.7	310.7	322.0	329.0	310.8	297.6	0.029	-0.021	0.030	0.060	-0.020	-0.082	327.8	310.7	322.0	329.0	310.8	297.6	0.98	1.00	1.00	1.00	1.00	1.00	0.985324	1.000000	-
Rv0337c	aspC	20	94.9	109.8	83.6	112.3	111.0	103.1	-0.105	0.096	-0.279	0.127	0.110	0.009	116.2	129.2	98.3	124.8	126.8	114.5	0.82	0.85	0.85	0.90	0.88	0.90	0.902000	1.000000	-
Rv0338c	-	35	31.8	7.0	34.4	1.2	0.8	12.7	0.905	-0.715	1.003	-1.660	-1.761	-0.149	72.6	61.0	77.7	21.3	11.2	68.5	0.44	0.11	0.44	0.06	0.07	0.19	0.000000	0.000000	-
Rv0339c	-	26	144.9	179.1	168.1	167.0	182.1	161.6	-0.199	0.097	0.008	-0.001	0.120	-0.047	182.3	216.5	194.2	197.4	210.4	182.7	0.79	0.83	0.87	0.85	0.87	0.88	0.902298	1.000000	-
Rv0340	-	4	48.1	52.2	51.5	68.4	91.4	55.7	-0.318	-0.211	-0.230	0.149	0.541	-0.125	72.2	52.2	82.4	74.6	91.4	89.1	0.67	1.00	0.62	0.92	1.00	0.62	0.265206	1.000000	-
Rv0341	iniB	15	126.8	137.8	161.3	128.5	110.1	116.1	-0.036	0.080	0.300	-0.017	-0.231	-0.158	167.8	165.4	172.9	165.2	127.1	145.1	0.76	0.83	0.93	0.78	0.87	0.80	0.693478	1.000000	-
Rv0342	iniA	24	149.5	190.0	156.8	174.3	172.9	180.2	-0.185	0.151	-0.118	0.030	0.019	0.077	156.0	190.0	163.6	181.9	188.6	196.6	0.96	1.00	0.96	0.96	0.92	0.92	0.207501	1.000000	-
Rv0343	iniC	10	175.9	133.1	159.9	129.4	180.5	141.6	0.192	-0.197	0.058	-0.237	0.228	-0.112	229.4	147.9	188.1	168.8	200.5	141.6	0.77	0.90	0.85	0.77	0.90	1.00	0.272919	1.000000	-
Rv0344c	lpqJ	10	216.2	204.1	150.1	165.6	174.1	208.8	0.208	0.127	-0.304	-0.167	-0.096	0.159	223.7	204.1	166.8	165.6	183.3	208.8	0.97	1.00	0.90	1.00	0.95	1.00	0.387968	1.000000	-
Rv0345	-	7	317.5	239.6	252.7	249.4	239.6	268.4	0.277	-0.122	-0.047	-0.065	-0.122	0.038	317.5	239.6	252.7	249.4	239.6	268.4	1.00	1.00	1.00	1.00	1.00	1.00	0.877769	1.000000	-
Rv0346c	ansP2	26	198.1	129.7	180.5	91.3	111.1	115.1	0.510	-0.083	0.379	-0.567	-0.297	-0.249	220.8	146.6	208.6	104.7	120.4	127.3	0.90	0.88	0.87	0.87	0.92	0.90	0.000196	0.004661	-
Rv0347	-	15	0.6	5.8	8.5	0.6	5.1	4.1	-0.699	0.245	0.567	-0.692	0.140	-0.004	14.0	58.2	51.2	14.6	30.3	30.8	0.04	0.10	0.17	0.04	0.17	0.13	0.115675	0.799142	-
Rv0348	-	16	24.8	39.1	20.1	29.4	29.3	26.7	-0.160	0.409	-0.403	0.048	0.045	-0.066	54.0	54.4	58.6	58.7	42.6	38.9	0.46	0.72	0.34	0.50	0.69	0.69	0.111618	0.785054	-
Rv0349	-	8	180.1	155.1	135.2	127.5	142.5	187.5	0.213	0.004	-0.188	-0.269	-0.114	0.270	180.1	155.1	135.2	127.5	142.5	187.5	1.00	1.00	1.00	1.00	1.00	1.00	0.377849	1.000000	-
Rv0350	dnaK	17	1.0	0.9	0.4	0.3	0.4	0.6	0.099	0.075	-0.059	-0.081	-0.044	0.000	16.9	15.1	12.6	14.8	14.5	10.1	0.06	0.06	0.03	0.02	0.03	0.06	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0351	grpE	9	6.2	15.2	10.4	7.5	9.3	8.8	-0.383	0.471	0.083	-0.220	-0.025	-0.080	55.7	91.3	94.0	67.7	56.0	79.2	0.11	0.17	0.11	0.11	0.17	0.11	0.996922	1.000000	-
Rv0352	dnaJ1	11	26.4	70.3	33.3	66.0	64.1	39.6	-0.807	0.454	-0.522	0.369	0.331	-0.301	45.9	81.4	48.8	80.6	74.2	51.2	0.58	0.86	0.68	0.82	0.86	0.77	0.024860	0.280202	-
Rv0353	hspR	6	523.1	411.7	514.7	687.5	589.0	390.4	0.010	-0.332	-0.013	0.401	0.180	-0.407	553.8	411.7	617.7	825.1	589.0	468.5	0.94	1.00	0.83	0.83	1.00	0.83	0.209290	1.000000	-
Rv0354c	PPE7	4	46.1	48.4	46.3	32.8	55.7	59.4	-0.056	0.008	-0.050	-0.491	0.192	0.278	50.3	48.4	53.0	32.8	55.7	59.4	0.92	1.00	0.88	1.00	1.00	1.00	0.517931	1.000000	-
Rv0355c	PPE8	154	67.2	77.0	64.6	73.1	72.4	75.7	-0.087	0.097	-0.140	0.028	0.013	0.074	121.2	122.2	117.7	123.8	110.9	115.4	0.55	0.63	0.55	0.59	0.65	0.66	0.855997	1.000000	-
Rv0356c	-	8	142.4	219.2	191.6	168.1	168.9	196.1	-0.336	0.269	0.080	-0.104	-0.098	0.112	148.6	219.2	204.4	168.1	168.9	196.1	0.96	1.00	0.94	1.00	1.00	1.00	0.739600	1.000000	-
Rv0357c	purA	23	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0358	-	10	42.8	60.9	46.5	15.5	19.9	31.9	0.211	0.675	0.320	-1.007	-0.727	-0.160	58.3	60.9	54.7	27.4	23.5	37.6	0.73	1.00	0.85	0.57	0.85	0.85	0.000002	0.000061	-
Rv0359	-	10	361.0	363.6	426.9	352.3	387.1	389.2	-0.073	-0.063	0.166	-0.108	0.026	0.034	373.4	363.6	449.4	352.3	387.1	389.2	0.97	1.00	0.95	1.00	1.00	1.00	0.868080	1.000000	-
Rv0360c	-	8	563.4	458.7	485.0	459.5	463.0	404.7	0.252	-0.042	0.038	-0.040	-0.029	-0.221	587.9	524.2	485.0	525.1	529.1	404.7	0.96	0.88	1.00	0.88	0.88	1.00	0.536493	1.000000	-
Rv0361	-	8	150.0	197.0	141.4	199.6	211.2	191.9	-0.270	0.112	-0.352	0.131	0.210	0.076	163.6	197.0	161.6	199.6	211.2	191.9	0.92	1.00	0.88	1.00	1.00	1.00	0.474483	1.000000	-
Rv0362	mgtE	14	490.8	383.1	416.5	396.7	356.2	351.4	0.295	-0.058	0.061	-0.009	-0.162	-0.181	528.6	412.5	448.6	427.2	356.2	378.4	0.93	0.93	0.93	0.93	1.00	0.93	0.859501	1.000000	-
Rv0363c	fba	14	16.9	17.4	18.6	16.4	29.2	10.5	-0.080	-0.049	0.028	-0.114	0.561	-0.581	35.6	25.7	43.5	31.4	37.2	17.3	0.48	0.68	0.43	0.52	0.79	0.61	0.005595	0.087506	-
Rv0364	-	12	1.1	2.6	1.8	2.4	2.1	2.4	-0.211	0.104	-0.051	0.058	0.009	0.070	13.2	31.0	21.8	28.2	16.8	29.0	0.08	0.08	0.08	0.08	0.12	0.08	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0365c	-	19	396.5	388.0	340.4	390.7	374.1	364.7	0.077	0.046	-0.140	0.056	-0.006	-0.042	461.2	398.5	369.6	404.9	374.1	374.5	0.86	0.97	0.92	0.96	1.00	0.97	0.353277	1.000000	-
Rv0366c	-	5	243.4	285.5	317.3	247.3	237.3	248.1	-0.110	0.116	0.265	-0.088	-0.146	-0.083	243.4	285.5	317.3	247.3	237.3	248.1	1.00	1.00	1.00	1.00	1.00	1.00	0.842688	1.000000	-
Rv0367c	-	2	103.1	119.5	112.1	109.5	105.1	47.2	0.050	0.254	0.165	0.133	0.076	-1.000	103.1	119.5	112.1	109.5	105.1	47.2	1.00	1.00	1.00	1.00	1.00	1.00	0.150251	0.945649	-
Rv0368c	-	17	312.4	334.2	334.9	293.1	289.0	310.6	0.000	0.096	0.099	-0.090	-0.110	-0.008	312.4	334.2	345.1	293.1	297.8	310.6	1.00	1.00	0.97	1.00	0.97	1.00	0.787979	1.000000	-
Rv0369c	-	7	107.9	68.1	87.2	95.4	95.8	74.9	0.276	-0.351	-0.016	0.107	0.113	-0.222	125.8	79.4	101.7	111.3	95.8	87.4	0.86	0.86	0.86	0.86	1.00	0.86	0.690851	1.000000	-
Rv0370c	-	19	85.0	62.1	67.1	53.4	51.2	48.3	0.443	0.020	0.124	-0.179	-0.236	-0.313	112.6	76.1	94.4	70.8	60.8	68.0	0.75	0.82	0.71	0.75	0.84	0.71	0.247462	1.000000	-
Rv0371c	-	5	80.3	78.4	65.0	43.8	70.9	51.5	0.285	0.254	0.001	-0.520	0.117	-0.310	120.4	98.0	108.4	109.5	88.6	73.5	0.67	0.80	0.60	0.40	0.80	0.70	0.663302	1.000000	-
Rv0372c	-	6	103.3	65.6	109.4	122.7	97.3	90.9	0.069	-0.548	0.149	0.308	-0.013	-0.107	143.0	78.7	119.4	130.0	145.9	109.0	0.72	0.83	0.92	0.94	0.67	0.83	0.525198	1.000000	-
Rv0373c	-	37	94.2	93.1	102.4	99.6	91.1	103.0	-0.043	-0.059	0.071	0.033	-0.089	0.079	108.9	113.0	118.4	114.0	99.2	121.0	0.86	0.82	0.86	0.87	0.92	0.85	0.750521	1.000000	-
Rv0374c	-	4	59.9	84.1	100.1	95.2	118.0	66.3	-0.507	-0.051	0.188	0.120	0.414	-0.372	65.3	84.1	100.1	95.2	118.0	66.3	0.92	1.00	1.00	1.00	1.00	1.00	0.729683	1.000000	-
Rv0375c	-	8	104.8	73.3	134.5	113.5	104.9	105.3	-0.016	-0.505	0.329	0.094	-0.015	-0.010	139.7	106.6	195.7	151.4	111.9	129.6	0.75	0.69	0.69	0.75	0.94	0.81	0.816959	1.000000	-
Rv0376c	-	18	90.4	75.6	114.8	72.3	88.3	96.0	0.012	-0.230	0.341	-0.292	-0.019	0.095	101.7	82.5	137.8	88.7	96.3	104.7	0.89	0.92	0.83	0.81	0.92	0.92	0.479621	1.000000	-
Rv0377	-	8	128.5	136.7	115.7	181.6	121.7	94.4	-0.014	0.072	-0.159	0.469	-0.089	-0.440	171.3	156.2	154.3	242.1	149.8	100.7	0.75	0.88	0.75	0.75	0.81	0.94	0.047000	0.457386	-
Rv0378	-	3	118.3	150.5	100.0	133.1	91.8	135.9	-0.037	0.297	-0.270	0.125	-0.388	0.154	177.5	225.7	150.0	171.1	110.1	203.8	0.67	0.67	0.67	0.78	0.83	0.67	0.994315	1.000000	-
Rv0379	secE2	2	239.8	229.4	161.4	196.4	147.1	276.5	0.198	0.135	-0.359	-0.084	-0.489	0.399	239.8	229.4	161.4	196.4	147.1	276.5	1.00	1.00	1.00	1.00	1.00	1.00	0.657296	1.000000	-
Rv0380c	-	10	220.6	232.4	257.9	213.2	200.2	205.7	-0.007	0.067	0.214	-0.055	-0.144	-0.105	220.6	232.4	257.9	213.2	200.2	228.5	1.00	1.00	1.00	1.00	1.00	0.90	0.459955	1.000000	-
Rv0381c	-	17	200.7	238.2	185.6	316.2	304.8	217.9	-0.275	-0.033	-0.385	0.368	0.316	-0.159	238.0	238.2	210.4	336.0	323.9	217.9	0.84	1.00	0.88	0.94	0.94	1.00	0.002704	0.047733	-
Rv0382c	pyrE	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0383c	-	8	32.2	8.9	14.0	12.0	6.2	8.3	0.999	-0.418	0.034	-0.133	-0.730	-0.487	257.4	71.4	112.4	95.7	49.7	66.2	0.12	0.12	0.12	0.12	0.12	0.12	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0384c	clpB	21	18.6	70.3	27.0	48.2	67.4	45.2	-1.114	0.560	-0.678	0.058	0.502	-0.027	39.1	77.7	47.2	55.2	74.5	51.3	0.48	0.90	0.57	0.87	0.90	0.88	0.000000	0.000000	-
Rv0385	-	19	435.6	419.8	412.3	413.2	364.6	341.6	0.129	0.077	0.051	0.054	-0.124	-0.217	435.6	419.8	423.5	413.2	374.4	341.6	1.00	1.00	0.97	1.00	0.97	1.00	0.843075	1.000000	-
Rv0386	-	41	258.0	218.6	231.3	251.6	231.1	217.5	0.134	-0.100	-0.020	0.098	-0.022	-0.107	278.4	242.2	249.6	266.7	243.0	225.8	0.93	0.90	0.93	0.94	0.95	0.96	0.950311	1.000000	-
Rv0387c	-	11	153.8	166.2	154.1	150.3	181.3	122.0	-0.007	0.101	-0.005	-0.040	0.223	-0.330	163.7	192.4	178.4	155.0	181.3	141.3	0.94	0.86	0.86	0.97	1.00	0.86	0.488226	1.000000	-
Rv0388c	PPE9	9	44.2	30.0	38.6	43.1	45.2	47.1	0.085	-0.405	-0.088	0.052	0.116	0.168	59.6	41.6	57.9	58.1	62.6	56.5	0.74	0.72	0.67	0.74	0.72	0.83	0.981329	1.000000	-
Rv0389	purT	7	372.5	387.9	429.2	360.6	324.6	413.2	-0.033	0.024	0.168	-0.080	-0.229	0.114	411.7	452.5	462.2	420.7	378.7	413.2	0.90	0.86	0.93	0.86	0.86	1.00	0.873275	1.000000	-
Rv0390	-	6	267.7	271.1	227.2	225.2	208.1	226.9	0.168	0.186	-0.064	-0.076	-0.188	-0.066	301.2	325.3	272.7	270.3	249.8	272.3	0.89	0.83	0.83	0.83	0.83	0.83	0.996784	1.000000	-
Rv0391	metZ	20	90.6	94.5	82.0	92.5	88.0	98.1	-0.005	0.052	-0.142	0.024	-0.045	0.104	113.2	114.5	99.4	106.8	103.5	103.2	0.80	0.82	0.82	0.87	0.85	0.95	0.886019	1.000000	-
Rv0392c	ndhA	15	168.5	203.3	170.5	195.4	174.5	172.8	-0.099	0.165	-0.083	0.109	-0.050	-0.064	194.4	217.8	182.7	204.5	201.4	185.1	0.87	0.93	0.93	0.96	0.87	0.93	0.911971	1.000000	-
Rv0393	-	10	330.6	308.1	342.6	352.9	375.2	314.3	-0.028	-0.129	0.022	0.064	0.152	-0.100	342.0	362.4	403.0	441.2	441.5	349.2	0.97	0.85	0.85	0.80	0.85	0.90	0.556551	1.000000	-
Rv0394c	-	9	140.2	167.8	168.8	160.2	158.5	166.5	-0.187	0.064	0.072	-0.001	-0.016	0.053	157.7	177.7	189.9	173.0	167.8	166.5	0.89	0.94	0.89	0.93	0.94	1.00	0.958482	1.000000	-
Rv0395	-	6	96.4	98.0	80.8	92.3	72.7	76.4	0.154	0.177	-0.087	0.095	-0.230	-0.162	96.4	106.9	88.1	92.3	72.7	76.4	1.00	0.92	0.92	1.00	1.00	1.00	0.769066	1.000000	-
Rv0396	-	4	34.6	26.7	14.9	16.3	41.5	29.0	0.298	-0.020	-0.692	-0.594	0.531	0.081	51.9	42.8	59.7	65.3	55.4	38.7	0.67	0.62	0.25	0.25	0.75	0.75	0.330945	1.000000	-
Rv0397	-	3	214.5	231.5	221.7	215.3	272.5	208.7	-0.082	0.026	-0.036	-0.077	0.256	-0.121	275.8	231.5	332.6	323.0	272.5	208.7	0.78	1.00	0.67	0.67	1.00	1.00	0.566449	1.000000	-
Rv0398c	-	4	145.9	137.7	178.8	141.6	188.8	136.8	-0.084	-0.164	0.200	-0.125	0.277	-0.174	194.6	157.4	204.3	141.6	251.8	136.8	0.75	0.88	0.88	1.00	0.75	1.00	0.104593	0.756025	-
Rv0399c	lpqK	22	58.4	71.1	62.7	61.0	72.9	62.3	-0.138	0.126	-0.042	-0.080	0.159	-0.050	74.1	84.5	81.2	69.4	80.2	76.2	0.79	0.84	0.77	0.88	0.91	0.82	0.805899	1.000000	-
Rv0400c	fadE7	10	93.1	66.2	99.5	84.2	51.5	73.5	0.241	-0.222	0.333	0.103	-0.554	-0.081	103.5	66.2	110.6	97.1	68.7	73.5	0.90	1.00	0.90	0.87	0.75	1.00	0.025806	0.286700	-
Rv0401	-	3	75.5	97.1	112.8	83.2	93.4	64.1	-0.204	0.139	0.346	-0.071	0.087	-0.425	75.5	97.1	112.8	93.6	93.4	64.1	1.00	1.00	1.00	0.89	1.00	1.00	0.592590	1.000000	-
Rv0402c	mmpL1	48	107.7	87.7	93.9	100.5	87.3	105.6	0.142	-0.139	-0.047	0.047	-0.146	0.115	122.1	97.9	107.3	110.5	95.2	110.2	0.88	0.90	0.88	0.91	0.92	0.96	0.681289	1.000000	-
Rv0403c	mmpS1	7	68.4	86.0	87.1	87.6	102.5	126.3	-0.417	-0.106	-0.089	-0.082	0.134	0.422	71.8	86.0	87.1	87.6	102.5	126.3	0.95	1.00	1.00	1.00	1.00	1.00	0.312853	1.000000	-
Rv0404	fadD30	80	17.1	19.7	20.5	17.1	18.4	22.6	-0.134	0.028	0.072	-0.131	-0.051	0.188	43.1	38.0	41.4	35.1	33.0	37.3	0.40	0.52	0.49	0.49	0.56	0.61	0.144945	0.930416	-
Rv0405	pks6	103	47.1	57.2	50.5	49.4	51.0	51.4	-0.106	0.149	-0.017	-0.045	-0.002	0.007	103.3	103.4	102.9	98.4	92.2	93.6	0.46	0.55	0.49	0.50	0.55	0.55	0.991087	1.000000	-
Rv0406c	-	13	199.5	234.7	197.3	240.0	197.1	211.5	-0.094	0.134	-0.110	0.166	-0.112	-0.012	204.8	234.7	213.7	240.0	197.1	229.2	0.97	1.00	0.92	1.00	1.00	0.92	0.551350	1.000000	-
Rv0407	fgd1	18	151.4	154.4	167.7	144.7	147.2	175.5	-0.049	-0.021	0.094	-0.112	-0.088	0.157	157.2	154.4	188.7	144.7	147.2	175.5	0.96	1.00	0.89	1.00	1.00	1.00	0.074482	0.623469	-
Rv0408	pta	38	142.4	120.3	145.2	131.0	123.9	121.9	0.118	-0.116	0.146	0.002	-0.075	-0.098	156.1	142.9	157.6	153.9	147.1	136.2	0.91	0.84	0.92	0.85	0.84	0.89	0.553303	1.000000	-
Rv0409	ackA	16	46.3	39.1	42.7	41.7	41.8	53.3	0.061	-0.157	-0.043	-0.073	-0.071	0.247	61.7	54.4	68.4	52.7	55.7	63.2	0.75	0.72	0.62	0.79	0.75	0.84	0.846315	1.000000	-
Rv0410c	pknG	29	34.4	81.8	32.5	54.9	75.7	49.8	-0.602	0.536	-0.675	0.001	0.432	-0.128	49.9	91.2	55.4	68.2	84.5	55.5	0.69	0.90	0.59	0.80	0.90	0.90	0.000000	0.000011	-
Rv0411c	glnH	8	28.3	51.0	45.2	37.9	52.8	43.7	-0.534	0.219	0.061	-0.168	0.263	0.017	42.4	51.0	55.7	45.4	56.3	46.6	0.67	1.00	0.81	0.83	0.94	0.94	0.203287	1.000000	-
Rv0412c	-	21	45.7	109.8	35.4	71.0	90.6	72.0	-0.579	0.600	-0.906	0.004	0.336	0.023	61.3	115.3	57.2	82.8	92.8	75.6	0.75	0.95	0.62	0.86	0.98	0.95	0.000000	0.000005	-
Rv0413	mutT3	5	231.8	284.0	214.6	319.5	279.1	277.1	-0.203	0.084	-0.312	0.251	0.059	0.049	267.5	284.0	214.6	319.5	279.1	277.1	0.87	1.00	1.00	1.00	1.00	1.00	0.737455	1.000000	-
Rv0414c	thiE	9	0.9	2.9	0.7	0.0	0.8	1.2	-0.051	0.374	-0.092	-0.281	-0.065	0.031	23.3	17.2	12.6	0.0	14.5	21.7	0.04	0.17	0.06	0.00	0.06	0.06	0.728194	1.000000	-
Rv0415	thiO	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0416	thiS	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0417	thiG	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0418	lpqL	26	94.2	111.4	118.8	105.5	110.9	102.6	-0.179	0.052	0.142	-0.022	0.047	-0.061	106.5	118.2	126.1	121.0	115.4	111.1	0.88	0.94	0.94	0.87	0.96	0.92	0.666124	1.000000	-
Rv0419	lpqM	18	93.0	80.4	78.6	75.6	65.4	82.7	0.217	0.019	-0.011	-0.064	-0.260	0.058	102.4	87.7	85.8	78.5	67.2	90.2	0.91	0.92	0.92	0.96	0.97	0.92	0.567177	1.000000	-
Rv0420c	-	7	316.7	326.4	306.1	339.0	295.8	308.9	0.005	0.048	-0.043	0.102	-0.091	-0.030	316.7	326.4	306.1	339.0	295.8	308.9	1.00	1.00	1.00	1.00	1.00	1.00	0.991789	1.000000	-
Rv0421c	-	8	45.8	27.5	31.6	22.9	17.9	36.1	0.524	-0.118	0.052	-0.341	-0.623	0.221	54.9	44.0	38.9	39.2	26.1	41.3	0.83	0.62	0.81	0.58	0.69	0.88	0.088261	0.694601	-
Rv0422c	thiD	14	0.7	1.8	0.9	0.0	0.8	0.4	-0.024	0.235	0.034	-0.205	0.019	-0.098	14.0	12.5	12.6	0.0	11.8	10.8	0.05	0.14	0.07	0.00	0.07	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0423c	thiC	19	5.4	1.1	5.9	0.0	0.4	0.8	0.522	-0.260	0.586	-0.540	-0.434	-0.322	103.4	20.4	112.4	0.0	14.5	15.6	0.05	0.05	0.05	0.00	0.03	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0424c	-	8	65.6	61.2	64.2	51.1	66.6	84.5	0.002	-0.092	-0.028	-0.330	0.021	0.344	78.7	65.3	85.5	53.3	76.1	84.5	0.83	0.94	0.75	0.96	0.88	1.00	0.252622	1.000000	-
Rv0425c	ctpH	35	137.8	142.4	156.7	161.9	156.8	130.8	-0.097	-0.051	0.082	0.128	0.083	-0.169	174.3	158.2	192.4	180.9	182.9	157.9	0.79	0.90	0.81	0.90	0.86	0.83	0.726864	1.000000	-
Rv0426c	-	2	197.2	206.0	235.4	173.2	151.1	216.6	0.005	0.066	0.254	-0.178	-0.369	0.136	197.2	206.0	235.4	173.2	151.1	216.6	1.00	1.00	1.00	1.00	1.00	1.00	0.730115	1.000000	-
Rv0427c	xthA	13	173.1	203.0	175.3	172.0	156.5	173.4	-0.020	0.204	-0.002	-0.029	-0.160	-0.018	177.6	203.0	175.3	181.3	156.5	173.4	0.97	1.00	1.00	0.95	1.00	1.00	0.596454	1.000000	-
Rv0428c	-	12	115.1	92.2	86.5	90.1	92.2	124.4	0.192	-0.112	-0.200	-0.144	-0.113	0.301	121.8	96.2	98.8	98.3	92.2	124.4	0.94	0.96	0.88	0.92	1.00	1.00	0.210797	1.000000	-
Rv0429c	def	8	0.7	0.0	0.0	0.0	0.0	0.0	0.152	-0.032	-0.032	-0.032	-0.032	-0.032	16.4	0.0	0.0	0.0	0.0	0.0	0.04	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0430	-	3	1.3	0.0	0.0	0.0	0.0	0.0	0.270	-0.061	-0.061	-0.061	-0.061	-0.061	11.6	0.0	0.0	0.0	0.0	0.0	0.11	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0431	-	9	56.2	119.4	57.7	108.2	107.8	70.2	-0.581	0.442	-0.547	0.305	0.300	-0.283	69.0	153.5	86.5	139.1	129.3	79.0	0.81	0.78	0.67	0.78	0.83	0.89	0.072731	0.613525	-
Rv0432	sodC	12	283.1	286.9	259.9	241.6	230.2	255.9	0.123	0.142	0.002	-0.102	-0.170	-0.020	283.1	286.9	259.9	241.6	230.2	255.9	1.00	1.00	1.00	1.00	1.00	1.00	0.818331	1.000000	-
Rv0433	-	22	225.7	202.0	227.2	188.3	178.0	190.2	0.157	0.001	0.166	-0.098	-0.177	-0.084	225.7	222.2	232.5	207.2	206.1	190.2	1.00	0.91	0.98	0.91	0.86	1.00	0.019248	0.229936	-
Rv0434	-	13	260.0	191.0	221.0	199.2	224.2	215.4	0.246	-0.190	0.016	-0.130	0.037	-0.020	281.6	225.7	261.2	235.4	242.9	243.5	0.92	0.85	0.85	0.85	0.92	0.88	0.984265	1.000000	-
Rv0435c	-	21	255.4	232.4	232.4	203.4	230.3	231.8	0.142	0.009	0.009	-0.179	-0.004	0.005	315.5	244.1	295.8	261.5	230.3	263.1	0.81	0.95	0.79	0.78	1.00	0.88	0.021414	0.251295	-
Rv0436c	pssA	16	248.5	274.5	197.7	233.4	234.5	246.4	0.054	0.195	-0.268	-0.035	-0.028	0.042	248.5	274.5	197.7	233.4	234.5	246.4	1.00	1.00	1.00	1.00	1.00	1.00	0.660391	1.000000	-
Rv0437c	psd	8	208.8	282.5	173.1	191.6	238.2	205.8	-0.052	0.375	-0.316	-0.173	0.134	-0.072	294.7	282.5	213.0	209.0	272.2	299.4	0.71	1.00	0.81	0.92	0.88	0.69	0.197340	1.000000	-
Rv0438c	moeA2	13	245.6	192.7	221.4	188.1	204.8	228.1	0.198	-0.144	0.051	-0.178	-0.058	0.093	245.6	200.4	230.2	193.1	213.0	228.1	1.00	0.96	0.96	0.97	0.96	1.00	0.875814	1.000000	-
Rv0439c	-	18	259.4	219.9	248.6	230.9	194.8	208.4	0.189	-0.045	0.128	0.024	-0.215	-0.120	298.0	247.4	319.6	265.3	212.5	220.7	0.87	0.89	0.78	0.87	0.92	0.94	0.834572	1.000000	-
Rv0440	groEL	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0441c	-	7	156.2	167.2	176.2	177.4	153.5	181.6	-0.108	-0.012	0.061	0.070	-0.132	0.104	156.2	167.2	176.2	177.4	179.1	181.6	1.00	1.00	1.00	1.00	0.86	1.00	0.494073	1.000000	-
Rv0442c	PPE10	22	194.1	205.4	212.9	187.9	195.6	198.2	-0.035	0.044	0.095	-0.081	-0.024	-0.006	251.2	265.8	275.6	238.5	253.1	249.2	0.77	0.77	0.77	0.79	0.77	0.80	0.999889	1.000000	-
Rv0443	-	12	115.8	113.2	124.9	127.4	126.0	116.5	-0.056	-0.088	0.048	0.076	0.060	-0.049	115.8	118.2	136.3	131.1	131.5	127.1	1.00	0.96	0.92	0.97	0.96	0.92	0.677879	1.000000	-
Rv0444c	-	7	182.0	180.6	167.4	192.7	161.7	144.5	0.083	0.073	-0.034	0.164	-0.083	-0.239	238.8	210.7	195.3	224.8	188.6	202.3	0.76	0.86	0.86	0.86	0.86	0.71	0.987670	1.000000	-
Rv0445c	sigK	10	247.7	250.2	236.1	258.7	293.7	280.8	-0.075	-0.061	-0.143	-0.014	0.166	0.103	247.7	278.0	236.1	258.7	293.7	295.6	1.00	0.90	1.00	1.00	1.00	0.95	0.361487	1.000000	-
Rv0446c	-	15	98.8	113.4	108.0	112.9	127.0	119.3	-0.188	0.002	-0.065	-0.004	0.159	0.072	101.0	113.4	108.0	112.9	127.0	119.3	0.98	1.00	1.00	1.00	1.00	1.00	0.885646	1.000000	-
Rv0447c	ufaA1	25	239.9	268.3	242.9	249.5	243.2	227.6	-0.031	0.127	-0.014	0.025	-0.012	-0.106	253.4	285.4	264.0	259.9	258.7	242.1	0.95	0.94	0.92	0.96	0.94	0.94	0.994516	1.000000	-
Rv0448c	-	13	216.3	206.2	223.9	210.9	206.3	198.1	0.039	-0.027	0.088	0.004	-0.027	-0.084	216.3	206.2	232.9	216.5	206.3	198.1	1.00	1.00	0.96	0.97	1.00	1.00	0.963130	1.000000	-
Rv0449c	-	23	212.7	198.7	214.0	204.8	212.8	189.9	0.049	-0.047	0.057	-0.005	0.049	-0.111	222.4	203.1	223.7	207.8	212.8	198.5	0.96	0.98	0.96	0.99	1.00	0.96	0.964548	1.000000	-
Rv0450c	mmpL4	77	39.1	52.4	65.4	64.0	71.8	50.2	-0.493	-0.114	0.180	0.150	0.305	-0.172	68.5	76.2	106.0	92.3	104.3	67.8	0.57	0.69	0.62	0.69	0.69	0.74	0.000205	0.004830	-
Rv0451c	mmpS4	13	0.3	0.0	0.0	0.3	0.6	0.4	0.008	-0.075	-0.075	0.018	0.077	0.040	11.6	0.0	0.0	13.0	14.5	10.8	0.03	0.00	0.00	0.03	0.04	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0452	-	9	187.0	198.3	174.1	203.5	205.0	206.1	-0.063	0.019	-0.164	0.055	0.066	0.073	187.0	198.3	174.1	203.5	205.0	206.1	1.00	1.00	1.00	1.00	1.00	1.00	0.974129	1.000000	-
Rv0453	PPE11	21	233.7	227.2	186.6	220.2	210.7	222.6	0.106	0.066	-0.211	0.022	-0.040	0.037	245.4	227.2	223.9	227.4	221.2	233.7	0.95	1.00	0.83	0.97	0.95	0.95	0.334041	1.000000	-
Rv0454	-	6	324.2	330.5	275.4	326.8	346.9	312.1	0.021	0.049	-0.210	0.033	0.118	-0.033	324.2	330.5	275.4	326.8	346.9	312.1	1.00	1.00	1.00	1.00	1.00	1.00	0.987960	1.000000	-
Rv0455c	-	10	0.0	0.0	6.9	55.0	75.0	0.0	-2.476	-2.476	-1.221	1.109	1.524	-2.476	0.0	0.0	23.1	66.0	88.2	0.0	0.00	0.00	0.30	0.83	0.85	0.00	0.000000	0.000000	-
Rv0456c	echA2	9	120.8	139.0	121.6	152.7	138.5	119.2	-0.123	0.073	-0.113	0.203	0.067	-0.141	135.9	139.0	136.9	164.9	146.6	134.1	0.89	1.00	0.89	0.93	0.94	0.89	0.853429	1.000000	-
Rv0456A	-	4	182.1	200.4	196.0	190.8	197.6	212.1	-0.107	0.028	-0.004	-0.042	0.008	0.108	182.1	200.4	223.9	254.4	197.6	212.1	1.00	1.00	0.88	0.75	1.00	1.00	0.386225	1.000000	-
Rv0457c	-	33	103.0	110.1	109.3	109.6	105.1	107.0	-0.056	0.034	0.025	0.028	-0.029	-0.004	120.0	132.1	141.5	135.6	113.7	117.7	0.86	0.83	0.77	0.81	0.92	0.91	0.459786	1.000000	-
Rv0458	-	18	154.5	148.9	152.3	152.6	144.1	153.3	0.032	-0.019	0.013	0.015	-0.065	0.022	173.8	167.6	176.9	164.8	167.4	162.3	0.89	0.89	0.86	0.93	0.86	0.94	0.993140	1.000000	-
Rv0459	-	5	218.9	170.9	195.8	196.6	189.5	198.3	0.163	-0.185	0.006	0.012	-0.040	0.024	218.9	170.9	195.8	196.6	189.5	198.3	1.00	1.00	1.00	1.00	1.00	1.00	0.988560	1.000000	-
Rv0460	-	2	185.9	184.0	114.1	110.5	151.2	179.4	0.262	0.248	-0.418	-0.463	-0.027	0.212	185.9	184.0	114.1	110.5	151.2	179.4	1.00	1.00	1.00	1.00	1.00	1.00	0.071531	0.605965	-
Rv0461	-	15	200.9	173.0	160.7	187.3	199.6	199.6	0.102	-0.108	-0.211	0.004	0.093	0.093	205.5	173.0	160.7	187.3	199.6	199.6	0.98	1.00	1.00	1.00	1.00	1.00	0.929912	1.000000	-
Rv0462	lpd	25	3.0	11.4	4.3	0.6	0.8	5.5	-0.205	0.823	0.001	-0.730	-0.684	0.187	20.6	19.0	23.7	14.5	12.7	18.4	0.15	0.60	0.18	0.04	0.06	0.30	0.000000	0.000000	-
Rv0463	-	3	265.4	203.5	273.7	249.4	356.8	295.4	-0.045	-0.420	-0.002	-0.133	0.375	0.106	298.6	305.3	410.6	280.6	356.8	295.4	0.89	0.67	0.67	0.89	1.00	1.00	0.744339	1.000000	-
Rv0464c	-	14	77.6	111.3	99.0	119.6	119.1	102.5	-0.412	0.083	-0.079	0.182	0.176	-0.031	105.1	135.5	126.0	128.8	133.4	124.8	0.74	0.82	0.79	0.93	0.89	0.82	0.569671	1.000000	-
Rv0465c	-	24	190.4	206.0	193.2	174.7	148.5	218.4	0.014	0.125	0.034	-0.107	-0.335	0.207	204.6	210.4	201.6	190.6	151.6	227.9	0.93	0.98	0.96	0.92	0.98	0.96	0.519367	1.000000	-
Rv0466	-	8	122.0	182.4	145.0	134.9	132.3	149.5	-0.234	0.327	0.006	-0.094	-0.121	0.049	139.4	208.4	165.7	140.8	141.1	149.5	0.88	0.88	0.88	0.96	0.94	1.00	0.787274	1.000000	-
Rv0467	icl	18	377.2	82.7	345.6	115.6	98.2	82.5	1.019	-1.105	0.894	-0.645	-0.870	-1.108	377.2	90.2	355.5	124.9	110.5	95.8	1.00	0.92	0.97	0.93	0.89	0.86	0.000000	0.000000	-
Rv0468	fadB2	10	57.9	68.8	67.0	49.0	53.3	72.4	-0.078	0.152	0.116	-0.298	-0.188	0.222	86.9	98.2	111.6	73.5	82.0	96.6	0.67	0.70	0.60	0.67	0.65	0.75	0.991626	1.000000	-
Rv0469	umaA	21	49.7	59.6	53.8	64.1	57.5	64.4	-0.209	0.033	-0.104	0.130	-0.016	0.135	76.3	83.5	80.7	79.2	69.0	73.1	0.65	0.71	0.67	0.81	0.83	0.88	0.498682	1.000000	-
Rv0470c	pcaA	10	88.2	174.8	84.9	185.5	200.5	151.1	-0.711	0.238	-0.763	0.321	0.430	0.034	94.5	174.8	89.3	185.5	200.5	151.1	0.93	1.00	0.95	1.00	1.00	1.00	0.002563	0.045447	-
Rv0470A	-	11	578.5	559.8	509.1	490.5	492.4	502.1	0.147	0.100	-0.036	-0.089	-0.084	-0.056	578.5	559.8	509.1	490.5	492.4	552.3	1.00	1.00	1.00	1.00	1.00	0.91	0.510447	1.000000	-
Rv0471c	-	11	616.4	564.7	566.0	559.7	518.4	555.0	0.129	0.003	0.007	-0.009	-0.119	-0.021	678.0	564.7	566.0	615.7	518.4	610.5	0.91	1.00	1.00	0.91	1.00	0.91	0.451331	1.000000	-
Rv0472c	-	9	88.3	140.0	78.6	64.0	77.4	150.1	-0.167	0.469	-0.325	-0.601	-0.346	0.567	99.3	148.2	101.1	66.5	81.9	150.1	0.89	0.94	0.78	0.96	0.94	1.00	0.009970	0.139096	-
Rv0473	-	14	277.0	251.3	204.8	216.8	218.3	235.7	0.239	0.101	-0.188	-0.108	-0.098	0.010	290.8	251.3	229.4	222.1	218.3	244.5	0.95	1.00	0.89	0.98	1.00	0.96	0.705269	1.000000	-
Rv0474	-	7	352.5	359.7	324.0	351.8	344.8	369.2	0.009	0.037	-0.111	0.006	-0.023	0.075	352.5	359.7	324.0	351.8	344.8	369.2	1.00	1.00	1.00	1.00	1.00	1.00	0.996477	1.000000	-
Rv0475	hbhA	9	293.4	283.1	254.6	270.1	250.1	295.6	0.094	0.044	-0.106	-0.023	-0.132	0.105	293.4	283.1	254.6	270.1	250.1	295.6	1.00	1.00	1.00	1.00	1.00	1.00	0.942036	1.000000	-
Rv0476	-	5	287.3	288.3	271.5	276.8	276.1	251.4	0.061	0.066	-0.019	0.008	0.004	-0.128	287.3	288.3	301.6	276.8	276.1	251.4	1.00	1.00	0.90	1.00	1.00	1.00	0.952932	1.000000	-
Rv0477	-	5	570.4	503.8	582.8	458.6	466.5	472.3	0.163	-0.015	0.193	-0.149	-0.125	-0.107	570.4	503.8	582.8	458.6	466.5	472.3	1.00	1.00	1.00	1.00	1.00	1.00	0.303233	1.000000	-
Rv0478	deoC	3	217.2	175.3	196.9	155.3	216.3	242.1	0.113	-0.189	-0.026	-0.358	0.107	0.266	244.4	210.4	196.9	199.7	259.6	242.1	0.89	0.83	1.00	0.78	0.83	1.00	0.870949	1.000000	-
Rv0479c	-	12	46.6	28.0	35.5	39.1	30.6	25.2	0.397	-0.248	0.049	0.172	-0.138	-0.375	209.6	335.8	284.1	469.4	183.6	302.5	0.22	0.08	0.12	0.08	0.17	0.08	0.719981	1.000000	-
Rv0480c	-	14	184.2	200.0	188.7	187.8	167.8	188.7	-0.015	0.101	0.018	0.012	-0.146	0.019	203.6	207.4	211.3	187.8	180.7	211.4	0.90	0.96	0.89	1.00	0.93	0.89	0.616873	1.000000	-
Rv0481c	-	11	186.9	174.9	185.5	170.0	196.6	193.6	0.018	-0.076	0.007	-0.116	0.089	0.067	186.9	174.9	194.4	170.0	196.6	193.6	1.00	1.00	0.95	1.00	1.00	1.00	0.920041	1.000000	-
Rv0482	murB	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0483	lprQ	24	345.0	358.8	325.5	332.8	349.2	314.0	0.031	0.087	-0.052	-0.020	0.048	-0.103	354.8	358.8	332.5	342.3	349.2	314.0	0.97	1.00	0.98	0.97	1.00	1.00	0.846579	1.000000	-
Rv0484c	-	8	507.2	396.6	377.8	404.3	374.8	333.9	0.342	-0.009	-0.078	0.019	-0.090	-0.254	553.3	453.2	402.9	462.1	428.3	410.9	0.92	0.88	0.94	0.88	0.88	0.81	0.975789	1.000000	-
Rv0485	-	21	139.9	134.1	113.1	102.1	93.9	138.3	0.210	0.152	-0.085	-0.225	-0.340	0.194	154.6	152.3	121.8	114.9	106.6	141.7	0.90	0.88	0.93	0.89	0.88	0.98	0.456916	1.000000	-
Rv0486	-	11	331.2	203.3	353.8	124.7	142.7	239.9	0.501	-0.190	0.594	-0.873	-0.686	0.044	331.2	203.3	370.6	137.2	149.5	239.9	1.00	1.00	0.95	0.91	0.95	1.00	0.004566	0.072879	-
Rv0487	-	9	419.3	370.2	376.3	297.5	257.5	348.4	0.278	0.101	0.124	-0.210	-0.415	0.015	419.3	370.2	376.3	297.5	257.5	348.4	1.00	1.00	1.00	1.00	1.00	1.00	0.213011	1.000000	-
Rv0488	-	9	192.3	211.6	209.1	218.4	203.4	184.1	-0.077	0.058	0.041	0.102	0.002	-0.139	192.3	211.6	209.1	218.4	203.4	184.1	1.00	1.00	1.00	1.00	1.00	1.00	0.981231	1.000000	-
Rv0489	gpm1	11	20.1	7.9	11.9	0.4	1.2	1.4	1.048	0.080	0.477	-1.173	-0.965	-0.923	36.9	24.7	29.2	13.0	27.0	15.6	0.55	0.32	0.41	0.03	0.05	0.09	0.000001	0.000019	-
Rv0490	senX3	16	183.4	165.1	169.2	176.9	159.6	169.3	0.102	-0.046	-0.012	0.051	-0.093	-0.011	214.7	176.1	200.5	184.6	176.1	193.5	0.85	0.94	0.84	0.96	0.91	0.88	0.897909	1.000000	-
Rv0491	regX3	8	379.1	359.9	392.3	376.9	337.6	365.6	0.040	-0.034	0.089	0.032	-0.125	-0.012	413.6	411.3	448.4	393.3	337.6	365.6	0.92	0.88	0.88	0.96	1.00	1.00	0.826400	1.000000	-
Rv0492c	-	14	492.6	450.5	444.6	455.4	407.9	368.0	0.172	0.045	0.026	0.061	-0.097	-0.243	544.4	485.2	444.6	503.4	439.3	396.3	0.90	0.93	1.00	0.90	0.93	0.93	0.694131	1.000000	-
Rv0492A	-	4	524.1	448.7	424.5	418.6	387.8	480.8	0.226	0.004	-0.075	-0.095	-0.204	0.103	524.1	448.7	424.5	418.6	387.8	480.8	1.00	1.00	1.00	1.00	1.00	1.00	0.831888	1.000000	-
Rv0493c	-	16	237.5	202.3	219.8	191.5	214.7	235.7	0.128	-0.098	0.019	-0.176	-0.014	0.117	259.1	215.8	242.6	195.6	214.7	243.3	0.92	0.94	0.91	0.98	1.00	0.97	0.652466	1.000000	-
Rv0494	-	6	206.9	194.1	196.7	233.4	189.5	203.0	0.021	-0.069	-0.051	0.190	-0.103	-0.007	206.9	194.1	196.7	233.4	189.5	203.0	1.00	1.00	1.00	1.00	1.00	1.00	0.988234	1.000000	-
Rv0495c	-	11	64.4	64.9	71.5	40.9	49.1	66.2	0.105	0.116	0.246	-0.491	-0.253	0.142	88.6	64.9	98.4	64.3	60.1	76.7	0.73	1.00	0.73	0.64	0.82	0.86	0.081465	0.663356	-
Rv0496	-	8	211.6	236.9	188.9	200.8	219.6	215.4	-0.004	0.155	-0.164	-0.078	0.048	0.021	211.6	236.9	188.9	200.8	219.6	215.4	1.00	1.00	1.00	1.00	1.00	1.00	0.987427	1.000000	-
Rv0497	-	12	105.1	125.3	113.5	136.5	188.8	115.8	-0.302	-0.060	-0.197	0.058	0.512	-0.169	118.3	125.3	123.8	140.3	188.8	115.8	0.89	1.00	0.92	0.97	1.00	1.00	0.192848	1.000000	-
Rv0498	-	12	255.7	286.3	235.6	273.2	247.9	262.5	-0.025	0.135	-0.140	0.069	-0.069	0.012	263.0	286.3	245.8	273.2	283.3	262.5	0.97	1.00	0.96	1.00	0.88	1.00	0.379664	1.000000	-
Rv0499	-	5	175.5	167.4	187.6	185.8	167.8	153.8	0.020	-0.046	0.114	0.101	-0.043	-0.164	175.5	167.4	187.6	185.8	167.8	153.8	1.00	1.00	1.00	1.00	1.00	1.00	0.795281	1.000000	-
Rv0500	proC	11	19.3	17.0	12.3	25.3	18.3	22.4	0.011	-0.129	-0.482	0.332	-0.050	0.185	37.4	25.0	27.0	36.4	26.8	32.8	0.52	0.68	0.45	0.70	0.68	0.68	0.493196	1.000000	-
Rv0500A	-	3	25.2	42.3	52.0	39.5	50.5	45.5	-0.654	-0.005	0.263	-0.095	0.226	0.087	37.8	42.3	62.4	50.7	60.6	54.5	0.67	1.00	0.83	0.78	0.83	0.83	0.848912	1.000000	-
Rv0500B	-	1	113.0	61.9	118.7	74.2	74.9	76.4	0.367	-0.452	0.435	-0.209	-0.196	-0.170	113.0	61.9	118.7	74.2	74.9	76.4	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0501	galE2	22	139.0	169.8	144.0	161.2	169.3	165.5	-0.180	0.099	-0.130	0.027	0.095	0.064	152.9	177.9	158.4	168.9	177.3	169.3	0.91	0.95	0.91	0.95	0.95	0.98	0.851050	1.000000	-
Rv0502	-	16	164.5	188.9	152.1	184.0	195.0	204.8	-0.138	0.056	-0.247	0.019	0.101	0.169	192.6	215.9	180.3	205.4	231.1	252.0	0.85	0.88	0.84	0.90	0.84	0.81	0.750628	1.000000	-
Rv0503c	cmaA2	19	177.9	238.7	246.1	270.8	296.0	178.4	-0.390	0.024	0.067	0.202	0.329	-0.386	181.1	238.7	259.7	270.8	296.0	178.4	0.98	1.00	0.95	1.00	1.00	1.00	0.117276	0.805391	-
Rv0504c	-	8	9.7	12.1	14.5	22.5	41.8	3.8	-0.609	-0.392	-0.196	0.294	1.064	-1.349	25.8	24.1	33.3	33.7	47.8	15.2	0.38	0.50	0.44	0.67	0.88	0.25	0.001100	0.021723	-
Rv0505c	serB1	19	56.6	79.5	61.2	62.2	71.3	70.5	-0.222	0.233	-0.119	-0.097	0.086	0.071	70.2	91.5	72.7	73.9	84.7	83.7	0.81	0.87	0.84	0.84	0.84	0.84	0.804803	1.000000	-
Rv0506	mmpS2	8	173.2	179.2	158.7	128.4	156.9	187.0	0.078	0.125	-0.045	-0.340	-0.061	0.185	173.2	179.2	158.7	128.4	156.9	187.0	1.00	1.00	1.00	1.00	1.00	1.00	0.616107	1.000000	-
Rv0507	mmpL2	79	82.4	79.8	77.9	77.4	81.3	88.5	0.020	-0.024	-0.057	-0.066	0.002	0.116	126.9	108.7	118.3	110.5	109.8	121.5	0.65	0.73	0.66	0.70	0.74	0.73	0.953541	1.000000	-
Rv0508	-	5	77.3	69.2	60.1	64.2	50.9	134.3	0.023	-0.127	-0.315	-0.228	-0.535	0.783	89.2	76.8	66.8	64.2	63.6	167.9	0.87	0.90	0.90	1.00	0.80	0.80	0.001246	0.024243	-
Rv0509	hemA	19	1.7	1.9	2.0	111.8	98.5	21.7	-2.739	-2.698	-2.679	1.389	1.215	-0.739	24.0	14.2	24.9	111.8	101.2	25.0	0.07	0.13	0.08	1.00	0.97	0.87	0.000000	0.000000	-
Rv0510	hemC	10	0.5	1.0	0.6	141.1	142.1	36.0	-3.400	-3.282	-3.379	1.319	1.329	-0.514	16.4	10.2	12.6	151.1	157.9	42.3	0.03	0.10	0.05	0.93	0.90	0.85	0.000000	0.000000	-
Rv0511	hemD	16	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0512	hemB	18	1.1	0.6	0.9	100.8	109.5	19.6	-2.853	-2.973	-2.899	1.275	1.389	-0.831	18.9	10.2	31.0	108.8	123.2	24.3	0.06	0.06	0.03	0.93	0.89	0.81	0.000000	0.000000	-
Rv0513	-	6	102.1	131.2	95.8	140.1	145.6	137.6	-0.284	0.063	-0.372	0.154	0.208	0.129	102.1	131.2	95.8	140.1	145.6	137.6	1.00	1.00	1.00	1.00	1.00	1.00	0.021589	0.252607	-
Rv0514	-	1	753.1	737.6	743.8	902.6	808.7	912.0	-0.104	-0.133	-0.122	0.156	-0.002	0.171	753.1	737.6	743.8	902.6	808.7	912.0	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0515	-	18	321.1	323.2	305.2	329.8	289.2	295.0	0.047	0.057	-0.025	0.085	-0.101	-0.073	333.4	323.2	313.9	329.8	289.2	295.0	0.96	1.00	0.97	1.00	1.00	1.00	0.824171	1.000000	-
Rv0516c	-	6	161.1	178.5	152.1	143.3	146.9	139.7	0.067	0.211	-0.014	-0.097	-0.062	-0.132	223.1	214.2	202.7	214.9	220.4	152.4	0.72	0.83	0.75	0.67	0.67	0.92	0.932026	1.000000	-
Rv0517	-	17	263.9	273.2	273.9	276.2	252.2	265.0	-0.019	0.031	0.034	0.046	-0.083	-0.013	269.2	273.2	273.9	276.2	252.2	265.0	0.98	1.00	1.00	1.00	1.00	1.00	0.975935	1.000000	-
Rv0518	-	10	183.8	188.2	163.9	184.2	203.1	192.3	-0.016	0.017	-0.177	-0.013	0.125	0.047	239.7	198.1	234.2	240.2	239.0	213.7	0.77	0.95	0.70	0.77	0.85	0.90	0.813320	1.000000	-
Rv0519c	-	7	308.6	258.7	292.3	281.6	257.6	268.0	0.149	-0.101	0.072	0.019	-0.107	-0.051	381.3	258.7	409.2	369.6	300.6	312.7	0.81	1.00	0.71	0.76	0.86	0.86	0.692995	1.000000	-
Rv0520	-	4	148.4	157.3	143.4	148.0	153.0	197.5	-0.087	-0.005	-0.135	-0.090	-0.044	0.313	148.4	157.3	163.9	148.0	153.0	197.5	1.00	1.00	0.88	1.00	1.00	1.00	0.852420	1.000000	-
Rv0521	-	4	46.2	68.4	58.6	42.8	70.9	55.4	-0.278	0.243	0.036	-0.375	0.289	-0.040	46.2	68.4	58.6	42.8	70.9	55.4	1.00	1.00	1.00	1.00	1.00	1.00	0.345952	1.000000	-
Rv0522	gabP	19	165.6	160.3	138.9	146.9	138.0	167.3	0.112	0.067	-0.133	-0.055	-0.143	0.127	178.1	164.7	146.6	149.5	138.0	167.3	0.93	0.97	0.95	0.98	1.00	1.00	0.568965	1.000000	-
Rv0523c	-	7	140.8	112.9	125.8	136.8	123.9	127.1	0.134	-0.172	-0.023	0.094	-0.044	-0.008	173.9	112.9	160.1	151.3	123.9	136.9	0.81	1.00	0.79	0.90	1.00	0.93	0.528569	1.000000	-
Rv0524	hemL	20	0.5	3.6	2.5	14.3	17.3	15.7	-1.354	-0.702	-0.899	0.470	0.673	0.564	14.0	13.0	24.9	33.1	32.9	31.3	0.03	0.28	0.10	0.43	0.53	0.50	0.000000	0.000000	-
Rv0525	-	9	1.7	2.8	0.0	0.0	0.0	0.0	0.221	0.436	-0.200	-0.200	-0.200	-0.200	15.3	16.6	0.0	0.0	0.0	0.0	0.11	0.17	0.00	0.00	0.00	0.00	0.046098	0.453029	-
Rv0526	-	7	9.8	17.3	8.0	4.7	2.7	15.2	0.017	0.610	-0.168	-0.591	-0.924	0.466	20.6	22.1	22.5	16.5	12.7	17.8	0.48	0.79	0.36	0.29	0.21	0.86	0.002717	0.047755	-
Rv0527	ccdA	5	8.0	2.0	9.4	0.0	1.5	5.3	0.473	-0.410	0.622	-0.904	-0.536	0.133	17.1	10.2	23.5	0.0	14.5	10.5	0.47	0.20	0.40	0.00	0.10	0.50	0.007717	0.112373	-
Rv0528	-	15	5.9	6.8	3.7	0.6	0.3	5.6	0.306	0.416	-0.013	-0.644	-0.736	0.262	20.5	15.6	28.1	14.6	9.0	15.2	0.29	0.43	0.13	0.04	0.03	0.37	0.000022	0.000646	-
Rv0529	ccsA	15	3.2	3.7	2.9	0.6	0.3	3.0	0.163	0.261	0.124	-0.370	-0.460	0.127	23.7	22.4	17.7	14.4	9.0	14.8	0.13	0.17	0.17	0.04	0.03	0.20	0.149120	0.944275	-
Rv0530	-	16	177.3	168.1	205.7	166.7	153.9	158.3	0.046	-0.029	0.254	-0.041	-0.153	-0.113	207.6	179.3	243.7	177.8	169.8	181.0	0.85	0.94	0.84	0.94	0.91	0.88	0.902263	1.000000	-
Rv0531	-	2	80.4	79.0	59.0	30.3	23.5	65.2	0.481	0.456	0.065	-0.796	-1.104	0.196	80.4	79.0	59.0	36.3	23.5	65.2	1.00	1.00	1.00	0.83	1.00	1.00	0.098361	0.736323	-
Rv0532	PE_PGRS6	14	202.3	180.4	182.9	197.4	175.3	163.3	0.136	-0.025	-0.005	0.102	-0.065	-0.164	283.2	210.5	269.6	267.5	223.2	207.8	0.71	0.86	0.68	0.74	0.79	0.79	0.972015	1.000000	-
Rv0533c	fabH	13	311.4	263.9	298.2	294.6	307.8	255.7	0.108	-0.127	0.046	0.029	0.091	-0.172	337.4	285.9	323.0	294.6	320.1	277.0	0.92	0.92	0.92	1.00	0.96	0.92	0.862415	1.000000	-
Rv0534c	menA	11	5.3	5.1	14.5	0.8	0.0	6.0	0.002	-0.027	0.923	-0.819	-1.044	0.096	22.0	12.5	29.1	13.9	0.0	16.5	0.24	0.41	0.50	0.06	0.00	0.36	0.000000	0.000000	-
Rv0535	pnp	9	202.7	212.5	205.3	224.2	172.6	185.6	0.015	0.082	0.033	0.158	-0.210	-0.109	237.9	273.2	246.3	232.9	172.6	208.8	0.85	0.78	0.83	0.96	1.00	0.89	0.492797	1.000000	-
Rv0536	galE3	12	120.8	107.5	146.8	118.3	113.1	77.8	0.080	-0.081	0.350	0.050	-0.012	-0.523	120.8	107.5	146.8	121.6	113.1	81.2	1.00	1.00	1.00	0.97	1.00	0.96	0.056613	0.514543	-
Rv0537c	-	18	224.0	212.9	210.8	220.9	204.1	213.0	0.063	-0.009	-0.023	0.043	-0.069	-0.009	246.9	225.4	229.9	233.9	216.1	219.1	0.91	0.94	0.92	0.94	0.94	0.97	0.999304	1.000000	-
Rv0538	-	14	187.2	211.7	223.4	221.9	216.9	204.9	-0.169	0.005	0.081	0.071	0.039	-0.042	206.9	228.0	223.4	238.9	233.6	220.6	0.90	0.93	1.00	0.93	0.93	0.93	0.776771	1.000000	-
Rv0539	-	6	54.8	65.3	61.0	46.2	56.1	64.8	-0.076	0.157	0.066	-0.299	-0.045	0.148	70.4	78.3	81.3	59.4	67.3	77.8	0.78	0.83	0.75	0.78	0.83	0.83	0.998970	1.000000	-
Rv0540	-	10	141.3	136.3	172.4	162.7	128.0	137.7	-0.050	-0.100	0.229	0.147	-0.187	-0.085	157.0	143.5	181.5	168.3	134.7	162.0	0.90	0.95	0.95	0.97	0.95	0.85	0.934666	1.000000	-
Rv0541c	-	17	0.0	1.8	1.5	3.3	3.6	0.9	-0.454	-0.016	-0.079	0.280	0.331	-0.212	0.0	12.1	16.8	18.8	17.6	10.3	0.00	0.15	0.09	0.18	0.21	0.09	0.013454	0.175998	-
Rv0542c	menE	14	5.9	2.5	6.3	0.0	0.5	1.1	0.501	-0.040	0.545	-0.627	-0.485	-0.338	19.2	11.7	21.9	0.0	14.5	10.3	0.31	0.21	0.29	0.00	0.04	0.11	0.000007	0.000237	-
Rv0543c	-	2	0.0	2.6	0.0	0.0	3.6	0.0	-0.272	0.332	-0.272	-0.272	0.515	-0.272	0.0	10.4	0.0	0.0	14.5	0.0	0.00	0.25	0.00	0.00	0.25	0.00	0.540721	1.000000	-
Rv0544c	-	6	257.8	303.8	257.1	403.8	371.2	320.2	-0.302	-0.069	-0.306	0.336	0.216	0.005	290.0	331.4	257.1	403.8	371.2	320.2	0.89	0.92	1.00	1.00	1.00	1.00	0.565587	1.000000	-
Rv0545c	pitA	14	144.8	185.3	142.6	273.6	252.1	140.1	-0.379	-0.034	-0.400	0.516	0.401	-0.424	160.0	216.1	166.4	294.6	282.3	163.5	0.90	0.86	0.86	0.93	0.89	0.86	0.066892	0.580218	-
Rv0546c	-	7	65.2	56.1	74.1	78.8	80.1	89.1	-0.169	-0.368	0.004	0.087	0.108	0.254	65.2	60.4	79.8	78.8	80.1	95.9	1.00	0.93	0.93	1.00	1.00	0.93	0.257718	1.000000	-
Rv0547c	-	10	176.9	162.3	157.3	159.7	152.7	157.0	0.132	0.011	-0.032	-0.011	-0.074	-0.035	176.9	162.3	157.3	159.7	152.7	157.0	1.00	1.00	1.00	1.00	1.00	1.00	0.985484	1.000000	-
Rv0548c	menB	10	4.2	6.6	4.1	0.0	1.5	2.5	0.174	0.513	0.158	-0.701	-0.334	-0.118	15.6	12.0	20.3	0.0	14.5	10.0	0.27	0.55	0.20	0.00	0.10	0.25	0.000196	0.004661	-
Rv0549c	-	4	376.9	345.7	310.4	406.7	283.8	324.7	0.141	0.018	-0.135	0.249	-0.262	-0.071	376.9	345.7	310.4	406.7	283.8	324.7	1.00	1.00	1.00	1.00	1.00	1.00	0.495864	1.000000	-
Rv0550c	-	3	381.5	294.0	322.7	290.1	253.8	232.4	0.362	-0.009	0.124	-0.027	-0.216	-0.341	381.5	352.8	322.7	290.1	253.8	232.4	1.00	0.83	1.00	1.00	1.00	1.00	0.853789	1.000000	-
Rv0551c	fadD8	28	171.5	170.3	168.6	166.1	182.9	185.6	-0.022	-0.031	-0.046	-0.067	0.069	0.090	175.7	183.4	174.8	174.4	193.2	192.5	0.98	0.93	0.96	0.95	0.95	0.96	0.826948	1.000000	-
Rv0552	-	18	232.2	227.2	225.7	225.2	217.6	246.4	0.019	-0.011	-0.021	-0.024	-0.072	0.103	236.6	247.9	238.9	233.8	230.4	260.9	0.98	0.92	0.94	0.96	0.94	0.94	0.930418	1.000000	-
Rv0553	menC	7	7.1	7.9	8.5	0.0	1.3	2.8	0.331	0.430	0.494	-0.941	-0.611	-0.302	21.2	15.9	19.9	0.0	18.0	13.0	0.33	0.50	0.43	0.00	0.07	0.21	0.003083	0.053485	-
Rv0554	bpoC	13	181.9	162.0	168.9	136.7	118.0	207.4	0.158	-0.004	0.054	-0.241	-0.445	0.343	186.7	175.5	175.7	136.7	127.9	207.4	0.97	0.92	0.96	1.00	0.92	1.00	0.102486	0.747564	-
Rv0555	menD	15	1.4	2.0	1.3	0.0	0.5	1.0	0.087	0.219	0.056	-0.269	-0.135	-0.009	15.7	12.1	12.6	0.0	14.5	9.9	0.09	0.17	0.10	0.00	0.03	0.10	0.159347	0.978145	-
Rv0556	-	12	1.4	0.0	2.9	1.5	2.5	4.2	-0.141	-0.503	0.151	-0.118	0.078	0.380	25.7	0.0	22.9	18.4	19.8	50.7	0.06	0.00	0.12	0.08	0.12	0.08	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0557	pimB	13	41.3	33.0	57.1	49.1	60.8	40.1	-0.164	-0.449	0.259	0.060	0.342	-0.203	73.2	57.2	61.9	59.8	75.3	54.8	0.56	0.58	0.92	0.82	0.81	0.73	0.025868	0.286700	-
Rv0558	ubiE	13	4.1	14.1	4.3	4.3	11.6	4.2	-0.416	0.658	-0.376	-0.373	0.455	-0.397	19.8	19.3	22.5	16.9	18.8	12.1	0.21	0.73	0.19	0.26	0.62	0.35	0.000176	0.004267	-
Rv0559c	-	6	180.7	199.8	191.4	174.9	216.8	205.5	-0.106	0.035	-0.025	-0.152	0.150	0.075	180.7	199.8	208.8	174.9	216.8	205.5	1.00	1.00	0.92	1.00	1.00	1.00	0.887683	1.000000	-
Rv0560c	-	12	94.0	108.2	102.2	102.6	123.7	99.5	-0.152	0.041	-0.037	-0.033	0.226	-0.074	112.8	144.3	122.7	111.9	148.5	132.7	0.83	0.75	0.83	0.92	0.83	0.75	0.436928	1.000000	-
Rv0561c	-	18	165.1	131.0	167.8	119.4	123.0	125.2	0.245	-0.078	0.267	-0.207	-0.166	-0.141	182.0	152.2	183.0	137.1	134.2	140.9	0.91	0.86	0.92	0.87	0.92	0.89	0.920990	1.000000	-
Rv0562	grcC1	13	0.0	3.1	1.2	0.0	0.6	0.4	-0.233	0.463	0.075	-0.233	-0.081	-0.118	0.0	13.4	31.0	0.0	14.5	10.8	0.00	0.23	0.04	0.00	0.04	0.04	0.039180	0.402434	-
Rv0563	htpX	11	214.2	258.0	222.3	421.0	469.0	190.4	-0.457	-0.194	-0.404	0.502	0.656	-0.623	220.9	270.3	222.3	421.0	469.0	190.4	0.97	0.95	1.00	1.00	1.00	1.00	0.000064	0.001687	-
Rv0564c	gpsA	10	228.9	187.7	181.6	210.5	161.4	166.6	0.267	-0.013	-0.060	0.149	-0.225	-0.181	254.4	187.7	201.7	233.9	179.3	166.6	0.90	1.00	0.90	0.90	0.90	1.00	0.500049	1.000000	-
Rv0565c	-	34	170.6	188.7	158.1	184.3	185.1	180.0	-0.058	0.083	-0.164	0.051	0.057	0.017	195.5	210.3	182.2	200.0	199.8	191.2	0.87	0.90	0.87	0.92	0.93	0.94	0.935206	1.000000	-
Rv0566c	-	4	16.0	20.5	18.8	18.8	15.1	36.3	-0.302	-0.023	-0.124	-0.123	-0.367	0.671	38.5	32.8	25.0	32.2	24.2	36.3	0.42	0.62	0.75	0.58	0.62	1.00	0.233014	1.000000	-
Rv0567	-	16	180.9	162.6	157.9	155.0	155.7	188.3	0.115	-0.035	-0.076	-0.102	-0.096	0.171	184.8	162.6	168.4	158.3	166.1	200.9	0.98	1.00	0.94	0.98	0.94	0.94	0.610138	1.000000	-
Rv0568	cyp135B1	12	280.4	242.5	257.5	255.3	207.1	248.6	0.171	-0.035	0.050	0.038	-0.258	0.000	315.5	291.0	309.0	306.4	248.5	298.3	0.89	0.83	0.83	0.83	0.83	0.83	0.996580	1.000000	-
Rv0569	-	3	392.8	379.1	319.0	368.8	329.6	354.3	0.135	0.084	-0.161	0.045	-0.115	-0.012	392.8	379.1	319.0	368.8	329.6	354.3	1.00	1.00	1.00	1.00	1.00	1.00	0.877105	1.000000	-
Rv0570	nrdZ	34	125.7	110.2	127.5	127.0	120.9	119.9	0.043	-0.139	0.063	0.057	-0.011	-0.023	150.8	124.9	144.5	150.6	146.8	143.0	0.83	0.88	0.88	0.84	0.82	0.84	0.923444	1.000000	-
Rv0571c	-	12	63.5	46.3	53.9	58.5	48.5	51.7	0.223	-0.196	0.004	0.112	-0.135	-0.051	71.5	65.3	64.6	67.9	61.2	65.3	0.89	0.71	0.83	0.86	0.79	0.79	0.842383	1.000000	-
Rv0572c	-	7	185.3	156.6	148.7	139.6	162.3	185.7	0.179	-0.056	-0.129	-0.217	-0.006	0.182	185.3	156.6	173.5	146.6	162.3	185.7	1.00	1.00	0.86	0.95	1.00	1.00	0.691040	1.000000	-
Rv0573c	-	14	190.4	171.4	169.5	201.7	192.1	164.2	0.067	-0.081	-0.096	0.148	0.079	-0.141	199.9	171.4	175.8	201.7	192.1	170.3	0.95	1.00	0.96	1.00	1.00	0.96	0.754924	1.000000	-
Rv0574c	-	19	154.4	176.1	148.6	176.0	147.8	148.9	-0.038	0.146	-0.091	0.146	-0.099	-0.088	160.0	209.1	171.1	209.0	165.2	157.2	0.96	0.84	0.87	0.84	0.89	0.95	0.184029	1.000000	-
Rv0575c	-	11	408.3	364.8	424.5	342.8	323.2	301.6	0.176	0.016	0.232	-0.073	-0.157	-0.255	464.6	401.3	467.0	377.1	355.5	331.7	0.88	0.91	0.91	0.91	0.91	0.91	0.998995	1.000000	-
Rv0576	-	18	140.0	145.1	128.5	129.3	142.0	126.6	0.048	0.098	-0.071	-0.063	0.067	-0.092	171.9	158.3	159.5	145.5	154.9	134.1	0.81	0.92	0.81	0.89	0.92	0.94	0.882771	1.000000	-
Rv0577	TB27.3	12	60.6	50.5	50.6	48.9	53.5	66.2	0.127	-0.114	-0.111	-0.155	-0.038	0.246	87.2	80.8	86.8	76.6	85.6	83.7	0.69	0.62	0.58	0.64	0.62	0.79	0.975105	1.000000	-
Rv0578c	PE_PGRS7	23	132.6	161.7	130.5	144.6	127.6	136.8	-0.066	0.212	-0.087	0.055	-0.118	-0.022	179.4	190.8	162.2	163.5	177.9	179.8	0.74	0.85	0.80	0.88	0.72	0.76	0.460926	1.000000	-
Rv0579	-	11	138.8	109.5	115.9	130.9	140.3	152.2	0.078	-0.251	-0.173	-0.004	0.093	0.206	143.1	114.7	121.4	130.9	140.3	152.2	0.97	0.95	0.95	1.00	1.00	1.00	0.883431	1.000000	-
Rv0580c	-	7	250.7	165.9	200.8	188.3	175.6	191.6	0.351	-0.231	0.038	-0.053	-0.151	-0.028	250.7	178.6	200.8	188.3	175.6	191.6	1.00	0.93	1.00	1.00	1.00	1.00	0.731020	1.000000	-
Rv0581	-	4	409.4	315.7	384.7	362.7	352.6	289.9	0.213	-0.157	0.124	0.041	0.000	-0.278	409.4	315.7	384.7	362.7	352.6	289.9	1.00	1.00	1.00	1.00	1.00	1.00	0.923545	1.000000	-
Rv0582	-	9	55.9	54.8	50.7	45.6	71.2	64.7	-0.030	-0.055	-0.158	-0.296	0.294	0.165	62.9	70.5	50.7	58.6	80.1	72.7	0.89	0.78	1.00	0.78	0.89	0.89	0.071309	0.605368	-
Rv0583c	lpqN	7	99.6	156.9	136.7	146.0	131.4	131.4	-0.407	0.224	0.032	0.122	-0.024	-0.024	130.7	219.7	191.4	204.3	153.3	153.3	0.76	0.71	0.71	0.71	0.86	0.86	0.762954	1.000000	-
Rv0584	-	56	110.9	97.5	108.9	95.3	97.7	103.4	0.112	-0.066	0.086	-0.097	-0.063	0.015	128.5	110.3	128.4	112.7	115.2	117.0	0.86	0.88	0.85	0.85	0.85	0.88	0.968229	1.000000	-
Rv0585c	-	34	110.1	85.2	94.7	87.5	78.4	90.1	0.262	-0.090	0.055	-0.053	-0.204	-0.014	145.9	113.7	126.3	116.0	93.5	120.1	0.75	0.75	0.75	0.75	0.84	0.75	0.768649	1.000000	-
Rv0586	-	10	36.2	36.1	43.5	49.4	46.9	43.4	-0.209	-0.210	0.028	0.193	0.124	0.026	63.9	42.5	58.0	70.6	55.1	54.3	0.57	0.85	0.75	0.70	0.85	0.80	0.544234	1.000000	-
Rv0587	yrbE2A	11	63.7	47.3	70.1	51.9	47.6	51.2	0.189	-0.204	0.316	-0.085	-0.198	-0.102	70.1	47.3	73.4	57.0	49.8	66.2	0.91	1.00	0.95	0.91	0.95	0.77	0.145196	0.930416	-
Rv0588	yrbE2B	13	82.5	71.0	71.6	73.5	75.2	61.9	0.173	-0.031	-0.018	0.016	0.047	-0.215	103.8	97.1	98.0	86.8	97.7	89.3	0.79	0.73	0.73	0.85	0.77	0.69	0.935320	1.000000	-
Rv0589	mce2A	23	51.7	60.7	59.1	40.2	41.4	45.5	0.051	0.262	0.228	-0.278	-0.239	-0.117	91.5	93.0	93.8	74.9	54.4	65.4	0.57	0.65	0.63	0.54	0.76	0.70	0.356147	1.000000	-
Rv0590	mce2B	9	75.7	52.0	64.6	56.9	52.9	55.8	0.319	-0.180	0.106	-0.062	-0.158	-0.090	113.5	66.9	83.0	73.2	73.3	59.0	0.67	0.78	0.78	0.78	0.72	0.94	0.342896	1.000000	-
Rv0590A	-	7	28.0	23.2	40.2	26.6	17.2	28.4	0.032	-0.194	0.487	-0.029	-0.543	0.049	49.0	32.5	56.3	43.0	26.7	44.1	0.57	0.71	0.71	0.62	0.64	0.64	0.626682	1.000000	-
Rv0591	mce2C	21	121.7	123.2	117.5	105.6	102.9	113.9	0.088	0.106	0.041	-0.107	-0.143	-0.002	139.4	132.7	133.4	112.8	108.1	119.6	0.87	0.93	0.88	0.94	0.95	0.95	0.879335	1.000000	-
Rv0592	mce2D	27	84.1	65.2	85.1	84.3	77.9	78.2	0.082	-0.262	0.099	0.086	-0.021	-0.016	104.8	76.5	95.8	94.8	91.5	81.2	0.80	0.85	0.89	0.89	0.85	0.96	0.393202	1.000000	-
Rv0593	lprL	17	79.5	65.1	77.5	71.7	63.6	78.8	0.121	-0.148	0.086	-0.018	-0.179	0.109	112.6	96.2	109.7	89.2	80.1	103.0	0.71	0.68	0.71	0.80	0.79	0.76	0.921588	1.000000	-
Rv0594	mce2F	28	168.4	173.4	161.7	155.9	156.3	179.2	0.022	0.063	-0.035	-0.086	-0.083	0.109	179.0	173.4	167.7	157.8	165.1	179.2	0.94	1.00	0.96	0.99	0.95	1.00	0.280017	1.000000	-
Rv0595c	-	6	213.6	193.0	189.1	200.6	206.2	228.1	0.057	-0.085	-0.114	-0.031	0.007	0.150	213.6	193.0	189.1	200.6	206.2	228.1	1.00	1.00	1.00	1.00	1.00	1.00	0.983558	1.000000	-
Rv0596c	-	4	49.9	82.4	39.7	46.6	33.2	52.5	-0.022	0.650	-0.317	-0.110	-0.545	0.045	199.4	329.5	158.8	69.9	88.4	209.9	0.25	0.25	0.25	0.67	0.38	0.25	0.014217	0.182993	-
Rv0597c	-	11	187.2	176.4	220.8	175.6	173.3	173.2	0.021	-0.062	0.253	-0.069	-0.088	-0.088	205.9	194.0	255.6	193.2	190.6	190.5	0.91	0.91	0.86	0.91	0.91	0.91	0.999621	1.000000	-
Rv0598c	-	7	180.1	148.2	184.1	213.9	173.1	190.8	-0.012	-0.285	0.018	0.230	-0.068	0.069	180.1	159.6	214.7	213.9	173.1	190.8	1.00	0.93	0.86	1.00	1.00	1.00	0.760715	1.000000	-
Rv0599c	-	5	98.8	97.9	87.5	79.2	68.8	71.9	0.221	0.209	0.056	-0.080	-0.271	-0.211	105.8	97.9	87.5	79.2	68.8	71.9	0.93	1.00	1.00	1.00	1.00	1.00	0.874956	1.000000	-
Rv0600c	-	2	216.1	205.9	226.5	167.2	203.5	159.0	0.135	0.067	0.201	-0.226	0.050	-0.296	216.1	205.9	226.5	167.2	203.5	212.0	1.00	1.00	1.00	1.00	1.00	0.75	0.892013	1.000000	-
Rv0601c	-	4	188.9	127.9	191.7	143.3	123.3	135.2	0.307	-0.238	0.328	-0.079	-0.288	-0.161	251.8	204.6	191.7	191.1	164.5	180.2	0.75	0.62	1.00	0.75	0.75	0.75	0.777869	1.000000	-
Rv0602c	tcrA	11	261.5	250.6	287.3	280.6	229.6	227.2	0.030	-0.031	0.163	0.129	-0.155	-0.170	287.7	306.2	316.1	342.9	265.9	277.6	0.91	0.82	0.91	0.82	0.86	0.82	0.863222	1.000000	-
Rv0603	-	1	108.9	56.2	174.3	145.7	121.9	64.1	-0.037	-0.933	0.618	0.367	0.119	-0.759	108.9	56.2	174.3	145.7	121.9	64.1	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0604	lpqO	5	323.6	302.5	345.6	283.8	292.6	294.1	0.075	-0.021	0.168	-0.112	-0.068	-0.061	404.5	302.5	384.0	283.8	365.7	326.8	0.80	1.00	0.90	1.00	0.80	0.90	0.605348	1.000000	-
Rv0605	-	8	180.6	173.3	175.3	178.5	213.8	211.6	-0.063	-0.120	-0.105	-0.079	0.175	0.160	180.6	173.3	175.3	178.5	244.3	211.6	1.00	1.00	1.00	1.00	0.88	1.00	0.309355	1.000000	-
Rv0606	-	8	223.5	182.6	152.7	176.0	219.3	146.1	0.279	-0.006	-0.256	-0.057	0.252	-0.318	223.5	243.5	162.9	176.0	250.7	167.0	1.00	0.75	0.94	1.00	0.88	0.88	0.048658	0.464875	-
Rv0607	-	1	311.9	275.4	364.7	263.2	194.1	145.9	0.263	0.086	0.485	0.022	-0.408	-0.808	311.9	275.4	364.7	263.2	194.1	145.9	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0608	-	2	316.0	191.5	203.6	254.3	237.3	190.9	0.436	-0.272	-0.186	0.128	0.030	-0.277	632.0	383.0	407.2	508.6	474.6	381.8	0.50	0.50	0.50	0.50	0.50	0.50	0.701234	1.000000	-
Rv0609	-	7	95.7	134.0	102.7	81.8	86.3	95.4	-0.051	0.414	0.046	-0.265	-0.193	-0.055	111.6	156.4	119.9	95.5	86.3	111.3	0.86	0.86	0.86	0.86	1.00	0.86	0.313068	1.000000	-
Rv0609A	-	2	163.3	153.0	227.6	192.8	174.7	130.1	-0.086	-0.177	0.382	0.148	0.009	-0.403	163.3	153.0	227.6	192.8	174.7	130.1	1.00	1.00	1.00	1.00	1.00	1.00	0.159961	0.980404	-
Rv0610c	-	7	206.4	308.5	272.4	184.9	242.7	189.6	-0.178	0.391	0.214	-0.332	0.051	-0.297	228.1	359.9	272.4	184.9	242.7	204.2	0.90	0.86	1.00	1.00	1.00	0.93	0.098322	0.736323	-
Rv0611c	-	12	90.9	110.4	108.0	82.0	102.1	115.4	-0.150	0.116	0.086	-0.291	0.008	0.177	121.2	120.4	136.4	105.4	106.5	145.7	0.75	0.92	0.79	0.78	0.96	0.79	0.516361	1.000000	-
Rv0612	-	6	236.7	192.8	237.9	242.8	215.2	216.3	0.080	-0.209	0.087	0.116	-0.054	-0.047	250.6	192.8	259.5	242.8	215.2	216.3	0.94	1.00	0.92	1.00	1.00	1.00	0.915023	1.000000	-
Rv0613c	-	16	310.4	272.0	278.7	281.5	257.6	225.4	0.193	0.005	0.040	0.054	-0.071	-0.260	323.9	272.0	297.2	281.5	266.0	225.4	0.96	1.00	0.94	1.00	0.97	1.00	0.701219	1.000000	-
Rv0614	-	13	142.2	163.3	140.1	139.0	156.0	168.4	-0.089	0.105	-0.109	-0.120	0.041	0.148	158.4	176.9	151.8	164.3	184.4	190.3	0.90	0.92	0.92	0.85	0.85	0.88	0.823966	1.000000	-
Rv0615	-	3	380.3	322.6	314.1	264.6	286.1	316.0	0.273	0.038	0.001	-0.242	-0.132	0.009	380.3	322.6	314.1	264.6	286.1	316.0	1.00	1.00	1.00	1.00	1.00	1.00	0.968340	1.000000	-
Rv0616c	-	5	126.8	142.0	154.1	152.0	93.8	127.3	-0.063	0.095	0.209	0.189	-0.478	-0.057	126.8	142.0	154.1	162.8	117.3	159.1	1.00	1.00	1.00	0.93	0.80	0.80	0.305239	1.000000	-
Rv0617	-	2	330.3	328.9	291.1	300.7	237.3	243.7	0.191	0.185	0.012	0.058	-0.278	-0.240	330.3	328.9	291.1	300.7	237.3	243.7	1.00	1.00	1.00	1.00	1.00	1.00	0.993213	1.000000	-
Rv0618	galTa	6	105.8	70.4	100.1	63.6	69.6	66.3	0.394	-0.160	0.318	-0.297	-0.177	-0.242	127.0	70.4	120.1	71.6	75.9	99.5	0.83	1.00	0.83	0.89	0.92	0.67	0.191663	1.000000	-
Rv0619	galTb	12	105.4	80.9	99.8	66.5	66.9	62.6	0.372	0.009	0.296	-0.255	-0.248	-0.336	122.4	80.9	104.1	92.1	80.3	83.5	0.86	1.00	0.96	0.72	0.83	0.75	0.013807	0.179260	-
Rv0620	galK	7	123.0	98.6	142.0	131.2	102.2	108.8	0.062	-0.243	0.261	0.151	-0.194	-0.107	135.9	125.5	198.8	131.2	119.2	127.0	0.90	0.79	0.71	1.00	0.86	0.86	0.239733	1.000000	-
Rv0621	-	9	177.1	160.1	127.1	131.6	118.7	134.1	0.314	0.173	-0.149	-0.100	-0.244	-0.074	199.2	192.2	152.5	148.0	133.5	150.9	0.89	0.83	0.83	0.89	0.89	0.89	0.986262	1.000000	-
Rv0622	-	10	37.7	34.7	52.5	45.2	41.0	45.7	-0.162	-0.267	0.267	0.070	-0.057	0.085	94.4	63.1	116.7	104.3	74.5	91.4	0.40	0.55	0.45	0.43	0.55	0.50	0.965310	1.000000	-
Rv0623	-	2	112.5	48.7	49.9	79.6	93.4	122.0	0.395	-0.734	-0.703	-0.079	0.139	0.507	112.5	97.4	66.5	79.6	93.4	122.0	1.00	0.50	0.75	1.00	1.00	1.00	0.300353	1.000000	-
Rv0624	-	6	169.1	176.9	173.7	173.7	187.6	193.7	-0.080	-0.017	-0.043	-0.043	0.065	0.110	203.0	176.9	173.7	173.7	187.6	193.7	0.83	1.00	1.00	1.00	1.00	1.00	0.464811	1.000000	-
Rv0625c	-	10	297.7	251.5	285.4	308.8	248.5	215.8	0.149	-0.090	0.090	0.201	-0.107	-0.306	297.7	279.5	300.5	319.5	248.5	215.8	1.00	0.90	0.95	0.97	1.00	1.00	0.586175	1.000000	-
Rv0626	-	4	138.8	129.6	155.0	116.6	125.8	144.4	0.038	-0.057	0.192	-0.204	-0.098	0.093	138.8	129.6	177.1	116.6	125.8	144.4	1.00	1.00	0.88	1.00	1.00	1.00	0.823354	1.000000	-
Rv0627	-	1	7.5	30.4	47.0	23.4	58.7	30.4	-1.597	-0.099	0.457	-0.417	0.749	-0.101	22.6	30.4	47.0	35.1	58.7	30.4	0.33	1.00	1.00	0.67	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0628c	-	3	354.9	292.8	312.1	298.6	246.3	277.6	0.253	-0.021	0.070	0.008	-0.266	-0.096	532.4	439.2	374.6	448.0	369.4	333.1	0.67	0.67	0.83	0.67	0.67	0.83	0.993827	1.000000	-
Rv0629c	recD	15	74.7	85.1	64.4	68.3	75.4	62.3	0.056	0.233	-0.145	-0.066	0.068	-0.189	98.9	91.2	77.3	85.4	113.2	81.2	0.76	0.93	0.83	0.80	0.67	0.77	0.297889	1.000000	-
Rv0630c	recB	31	152.1	121.0	155.4	136.1	132.7	119.7	0.154	-0.163	0.184	-0.001	-0.036	-0.179	172.5	134.0	192.7	158.2	146.9	140.0	0.88	0.90	0.81	0.86	0.90	0.85	0.803415	1.000000	-
Rv0631c	recC	17	176.4	141.1	171.7	168.0	143.0	143.2	0.161	-0.151	0.124	0.093	-0.133	-0.131	204.5	177.6	233.6	209.0	173.6	173.9	0.86	0.79	0.74	0.80	0.82	0.82	0.959469	1.000000	-
Rv0632c	echA3	10	92.1	75.8	82.9	97.5	95.6	115.0	-0.015	-0.280	-0.159	0.062	0.035	0.290	106.3	79.8	87.2	97.5	95.6	127.7	0.87	0.95	0.95	1.00	1.00	0.90	0.253650	1.000000	-
Rv0633c	-	12	250.0	270.0	265.0	279.6	271.3	266.6	-0.094	0.015	-0.011	0.065	0.022	-0.003	257.1	270.0	276.5	279.6	271.3	266.6	0.97	1.00	0.96	1.00	1.00	1.00	0.972332	1.000000	-
Rv0634c	-	12	63.8	77.2	86.8	58.1	74.4	90.7	-0.221	0.036	0.195	-0.345	-0.014	0.256	74.1	77.2	104.1	63.4	74.4	94.7	0.86	1.00	0.83	0.92	1.00	0.96	0.123138	0.835577	-
Rv0634A	-	6	84.8	93.4	99.2	105.0	99.4	94.0	-0.169	-0.037	0.046	0.123	0.048	-0.029	127.2	93.4	119.1	125.9	119.3	94.0	0.67	1.00	0.83	0.83	0.83	1.00	0.316474	1.000000	-
Rv0634B	rpmG	3	0.0	0.0	0.0	4.9	4.8	0.0	-0.404	-0.404	-0.404	0.580	0.569	-0.404	0.0	0.0	0.0	14.7	28.9	0.0	0.00	0.00	0.00	0.33	0.17	0.00	0.186939	1.000000	-
Rv0635	-	14	0.0	0.4	0.0	0.0	0.0	0.0	-0.017	0.082	-0.017	-0.017	-0.017	-0.017	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.04	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0636	-	6	0.0	0.0	0.0	0.0	0.8	0.0	-0.036	-0.036	-0.036	-0.036	0.166	-0.036	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.08	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0637	-	6	13.4	29.8	11.5	15.7	32.5	24.3	-0.508	0.410	-0.669	-0.341	0.517	0.162	26.8	44.7	34.4	31.4	48.7	32.4	0.50	0.67	0.33	0.50	0.67	0.75	0.304524	1.000000	-
Rv0638	secE	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0639	nusG	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0640	rplK	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0641	rplA	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0642c	mmaA4	16	6.6	31.9	16.5	43.9	51.8	19.8	-1.532	0.145	-0.635	0.549	0.765	-0.431	31.5	37.9	35.2	49.0	57.1	23.4	0.21	0.84	0.47	0.90	0.91	0.84	0.000000	0.000000	-
Rv0643c	mmaA3	20	152.7	232.7	152.3	244.9	247.9	203.2	-0.418	0.175	-0.421	0.247	0.264	-0.017	163.6	245.0	169.2	244.9	247.9	208.4	0.93	0.95	0.90	1.00	1.00	0.97	0.009546	0.134585	-
Rv0644c	mmaA2	9	314.5	335.2	378.0	421.4	457.5	328.5	-0.241	-0.150	0.021	0.176	0.293	-0.179	314.5	335.2	378.0	474.0	457.5	369.6	1.00	1.00	1.00	0.89	1.00	0.89	0.074535	0.623469	-
Rv0645c	mmaA1	16	354.6	337.4	332.6	345.0	338.9	370.2	0.033	-0.038	-0.058	-0.006	-0.031	0.094	354.6	337.4	343.3	345.0	338.9	370.2	1.00	1.00	0.97	1.00	1.00	1.00	0.918219	1.000000	-
Rv0646c	lipG	9	354.0	267.0	247.6	243.5	264.6	232.8	0.394	-0.007	-0.113	-0.137	-0.019	-0.201	354.0	267.0	247.6	243.5	280.2	232.8	1.00	1.00	1.00	1.00	0.94	1.00	0.424558	1.000000	-
Rv0647c	-	11	0.0	0.0	0.0	0.4	1.5	0.0	-0.090	-0.090	-0.090	0.034	0.284	-0.090	0.0	0.0	0.0	14.8	16.3	0.0	0.00	0.00	0.00	0.03	0.09	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0648	-	35	280.1	269.4	292.5	275.6	279.9	250.5	0.028	-0.027	0.089	0.005	0.027	-0.131	306.4	290.1	315.0	301.4	288.1	254.1	0.91	0.93	0.93	0.91	0.97	0.99	0.724736	1.000000	-
Rv0649	fabD2	4	505.1	396.4	570.9	442.7	395.6	321.5	0.201	-0.145	0.376	0.013	-0.147	-0.442	505.1	396.4	570.9	442.7	452.2	321.5	1.00	1.00	1.00	1.00	0.88	1.00	0.871257	1.000000	-
Rv0650	-	5	189.8	174.0	184.0	237.1	237.2	177.5	-0.073	-0.195	-0.117	0.240	0.241	-0.167	237.3	217.5	230.0	237.1	296.5	221.9	0.80	0.80	0.80	1.00	0.80	0.80	0.566310	1.000000	-
Rv0651	rplJ	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0652	rplL	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0653c	-	10	208.8	226.9	234.4	245.2	225.5	230.0	-0.127	-0.010	0.036	0.100	-0.018	0.010	240.9	252.1	246.7	272.4	250.6	230.0	0.87	0.90	0.95	0.90	0.90	1.00	0.873582	1.000000	-
Rv0654	-	25	338.2	319.3	320.0	308.0	294.5	276.3	0.127	0.045	0.048	-0.006	-0.070	-0.161	378.6	332.6	372.1	355.4	313.3	300.3	0.89	0.96	0.86	0.87	0.94	0.92	0.899014	1.000000	-
Rv0655	mkl	11	45.6	73.7	28.5	93.1	111.9	63.4	-0.556	0.081	-1.151	0.399	0.653	-0.120	79.1	101.3	44.7	118.1	136.7	82.1	0.58	0.73	0.64	0.79	0.82	0.77	0.049051	0.464875	-
Rv0656c	-	4	176.6	194.6	194.7	177.4	220.3	201.1	-0.133	0.003	0.004	-0.127	0.178	0.050	176.6	194.6	194.7	177.4	220.3	201.1	1.00	1.00	1.00	1.00	1.00	1.00	0.921941	1.000000	-
Rv0657c	-	1	179.8	179.7	131.3	259.9	163.2	217.2	-0.066	-0.067	-0.506	0.453	-0.203	0.199	179.8	179.7	131.3	259.9	163.2	217.2	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0658c	-	14	144.7	187.0	153.9	172.5	149.8	159.4	-0.151	0.208	-0.065	0.095	-0.103	-0.016	155.8	187.0	159.6	176.7	155.3	202.8	0.93	1.00	0.96	0.98	0.96	0.79	0.055456	0.506336	-
Rv0659c	-	4	290.2	317.9	317.3	321.3	297.1	373.7	-0.137	-0.007	-0.010	0.008	-0.104	0.222	316.6	317.9	423.0	350.5	297.1	373.7	0.92	1.00	0.75	0.92	1.00	1.00	0.846674	1.000000	-
Rv0660c	-	2	680.1	572.7	533.9	600.2	405.8	428.0	0.339	0.093	-0.008	0.160	-0.399	-0.323	680.1	572.7	533.9	600.2	405.8	428.0	1.00	1.00	1.00	1.00	1.00	1.00	0.007546	0.111103	-
Rv0661c	-	4	271.9	201.8	222.7	266.0	214.1	198.3	0.242	-0.179	-0.040	0.211	-0.096	-0.203	271.9	201.8	222.7	266.0	214.1	198.3	1.00	1.00	1.00	1.00	1.00	1.00	0.222509	1.000000	-
Rv0662c	-	4	167.1	170.7	226.9	156.8	160.8	152.3	-0.044	-0.014	0.386	-0.133	-0.098	-0.173	167.1	170.7	226.9	156.8	160.8	152.3	1.00	1.00	1.00	1.00	1.00	1.00	0.953552	1.000000	-
Rv0663	atsD	43	107.5	96.2	112.2	108.0	108.4	89.0	0.052	-0.101	0.111	0.058	0.063	-0.208	130.8	108.9	132.2	130.2	133.2	96.9	0.82	0.88	0.85	0.83	0.81	0.92	0.335578	1.000000	-
Rv0664	-	3	260.1	137.2	254.3	242.6	218.3	174.5	0.272	-0.627	0.240	0.174	0.025	-0.290	292.6	205.7	254.3	311.9	218.3	261.8	0.89	0.67	1.00	0.78	1.00	0.67	0.551442	1.000000	-
Rv0665	-	5	190.2	149.0	134.3	169.7	176.6	165.6	0.206	-0.137	-0.281	0.046	0.102	0.012	237.8	165.5	167.9	195.8	220.8	207.0	0.80	0.90	0.80	0.87	0.80	0.80	0.973608	1.000000	-
Rv0666	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0667	rpoB	32	0.0	0.3	0.0	0.0	0.0	0.0	-0.015	0.074	-0.015	-0.015	-0.015	-0.015	0.0	10.2	0.0	0.0	0.0	0.0	0.00	0.03	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0668	rpoC	35	0.0	0.0	0.2	0.0	0.0	0.0	-0.009	-0.009	0.042	-0.009	-0.009	-0.009	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.01	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0669c	-	32	180.0	182.3	195.5	190.2	167.3	181.6	-0.022	-0.004	0.095	0.056	-0.124	-0.010	194.2	191.3	231.8	196.3	178.5	193.7	0.93	0.95	0.84	0.97	0.94	0.94	0.508469	1.000000	-
Rv0670	end	5	335.8	239.3	255.8	262.6	325.2	232.7	0.282	-0.198	-0.104	-0.067	0.237	-0.237	335.8	239.3	255.8	262.6	325.2	232.7	1.00	1.00	1.00	1.00	1.00	1.00	0.626092	1.000000	-
Rv0671	lpqP	12	164.8	158.5	171.9	163.0	166.9	156.9	0.010	-0.045	0.069	-0.006	0.027	-0.059	179.8	158.5	171.9	177.8	166.9	171.1	0.92	1.00	1.00	0.92	1.00	0.92	0.488858	1.000000	-
Rv0672	fadE8	23	134.7	146.9	158.7	155.7	167.0	134.1	-0.145	-0.025	0.083	0.057	0.155	-0.152	145.2	173.2	173.8	179.1	174.6	150.4	0.93	0.85	0.91	0.87	0.96	0.89	0.591768	1.000000	-
Rv0673	echA4	8	111.5	117.2	126.9	99.1	100.9	103.0	0.022	0.091	0.201	-0.141	-0.116	-0.087	111.5	133.9	145.0	113.2	115.3	117.8	1.00	0.88	0.88	0.88	0.88	0.88	0.526029	1.000000	-
Rv0674	-	6	20.9	15.4	41.2	11.4	20.9	24.2	-0.079	-0.421	0.758	-0.734	-0.078	0.094	41.7	46.2	61.8	41.1	41.8	36.3	0.50	0.33	0.67	0.28	0.50	0.67	0.372689	1.000000	-
Rv0675	echA5	4	32.4	27.1	42.1	42.0	65.9	32.8	-0.278	-0.500	0.055	0.051	0.643	-0.266	43.3	43.3	56.2	45.8	75.3	32.8	0.75	0.62	0.75	0.92	0.88	1.00	0.150674	0.945649	-
Rv0676c	mmpL5	31	0.3	1.5	38.8	102.0	112.0	0.5	-3.164	-2.879	-0.118	1.171	1.300	-3.111	14.0	12.9	68.7	130.0	138.9	10.3	0.02	0.11	0.56	0.78	0.81	0.05	0.000000	0.000000	-
Rv0677c	mmpS5	5	1.5	3.0	54.5	131.7	138.6	0.0	-3.202	-2.906	-0.009	1.191	1.262	-3.582	22.6	15.0	68.1	164.6	154.0	0.0	0.07	0.20	0.80	0.80	0.90	0.00	0.000000	0.000000	-
Rv0678	-	5	259.0	255.7	223.4	190.2	193.8	338.0	0.088	0.070	-0.121	-0.347	-0.321	0.466	259.0	255.7	223.4	190.2	193.8	338.0	1.00	1.00	1.00	1.00	1.00	1.00	0.606170	1.000000	-
Rv0679c	-	6	165.7	181.8	175.0	223.2	221.6	183.2	-0.205	-0.075	-0.128	0.214	0.204	-0.064	175.5	181.8	175.0	223.2	221.6	183.2	0.94	1.00	1.00	1.00	1.00	1.00	0.951538	1.000000	-
Rv0680c	-	3	180.0	304.7	237.6	291.5	362.8	323.6	-0.640	0.103	-0.249	0.040	0.351	0.189	180.0	304.7	237.6	291.5	362.8	323.6	1.00	1.00	1.00	1.00	1.00	1.00	0.090739	0.701644	-
Rv0681	-	11	248.1	214.4	247.2	193.6	172.2	176.0	0.245	0.039	0.240	-0.105	-0.270	-0.239	272.9	235.8	247.2	213.0	172.2	176.0	0.91	0.91	1.00	0.91	1.00	1.00	0.202541	1.000000	-
Rv0682	rpsL	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0683	rpsG	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0684	fusA1	29	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0685	tuf	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0686	-	8	241.0	244.3	225.8	253.5	244.9	243.5	-0.007	0.012	-0.099	0.065	0.016	0.008	241.0	244.3	225.8	253.5	244.9	243.5	1.00	1.00	1.00	1.00	1.00	1.00	0.997971	1.000000	-
Rv0687	fabG	15	88.3	98.3	88.9	82.0	83.5	86.4	0.006	0.154	0.015	-0.095	-0.070	-0.024	110.4	134.1	111.1	105.4	92.8	108.0	0.80	0.73	0.80	0.78	0.90	0.80	0.914286	1.000000	-
Rv0688	-	17	91.6	84.2	77.6	74.3	87.3	88.7	0.119	0.004	-0.107	-0.166	0.054	0.075	116.8	98.7	85.1	92.4	95.8	97.2	0.78	0.85	0.91	0.80	0.91	0.91	0.698202	1.000000	-
Rv0689c	-	3	358.1	310.8	276.0	320.9	276.9	211.6	0.288	0.087	-0.082	0.132	-0.077	-0.457	460.4	310.8	414.0	412.6	276.9	317.4	0.78	1.00	0.67	0.78	1.00	0.67	0.781572	1.000000	-
Rv0690c	-	17	90.0	88.1	112.2	98.6	112.3	99.2	-0.146	-0.174	0.157	-0.020	0.159	-0.011	117.7	107.0	141.2	128.9	123.2	112.5	0.76	0.82	0.79	0.76	0.91	0.88	0.902162	1.000000	-
Rv0691c	-	9	113.4	130.7	140.9	113.7	122.4	118.6	-0.116	0.081	0.185	-0.112	-0.010	-0.054	117.8	138.4	158.5	113.7	122.4	118.6	0.96	0.94	0.89	1.00	1.00	1.00	0.376636	1.000000	-
Rv0692	-	6	217.6	196.9	173.4	265.5	213.3	258.3	-0.021	-0.162	-0.340	0.260	-0.049	0.222	261.1	236.2	189.1	318.6	256.0	310.0	0.83	0.83	0.92	0.83	0.83	0.83	0.902020	1.000000	-
Rv0693	pqqE	17	67.7	52.1	73.7	83.0	82.3	74.9	-0.089	-0.437	0.026	0.188	0.175	0.049	88.5	70.8	89.5	103.3	99.9	87.9	0.76	0.74	0.82	0.80	0.82	0.85	0.778830	1.000000	-
Rv0694	lldD1	16	54.4	70.7	77.9	68.6	67.2	85.9	-0.350	-0.002	0.129	-0.043	-0.069	0.262	87.1	102.8	108.4	99.7	93.5	110.0	0.62	0.69	0.72	0.69	0.72	0.78	0.966896	1.000000	-
Rv0695	-	10	75.8	65.3	68.7	68.7	68.5	62.4	0.141	-0.059	0.009	0.010	0.005	-0.120	103.3	81.6	91.6	79.3	105.4	83.2	0.73	0.80	0.75	0.87	0.65	0.75	0.885750	1.000000	-
Rv0696	-	23	127.9	104.6	155.5	122.8	119.4	99.9	0.069	-0.209	0.341	0.013	-0.026	-0.272	154.9	120.3	170.3	143.7	127.8	109.4	0.83	0.87	0.91	0.86	0.93	0.91	0.607179	1.000000	-
Rv0697	-	25	24.0	23.1	29.0	22.6	16.8	18.9	0.083	0.035	0.313	0.009	-0.330	-0.197	50.0	64.0	58.0	44.5	52.4	36.3	0.48	0.36	0.50	0.51	0.32	0.52	0.045173	0.446138	-
Rv0698	-	10	46.4	36.4	54.9	44.6	41.4	35.5	0.093	-0.221	0.313	0.042	-0.055	-0.250	58.0	52.0	64.6	60.9	59.1	54.7	0.80	0.70	0.85	0.73	0.70	0.65	0.861678	1.000000	-
Rv0699	-	2	3.8	10.4	9.5	13.8	13.1	2.4	-0.657	0.159	0.067	0.444	0.389	-0.911	22.6	20.8	37.9	27.6	26.2	9.4	0.17	0.50	0.25	0.50	0.50	0.25	0.791574	1.000000	-
Rv0700	rpsJ	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0701	rplC	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0702	rplD	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0703	rplW	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0704	rplB	16	0.0	1.3	0.0	0.6	0.3	0.3	-0.115	0.209	-0.115	0.051	-0.036	-0.021	0.0	20.1	0.0	14.6	9.0	10.8	0.00	0.06	0.00	0.04	0.03	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0705	rpsS	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0706	rplV	4	1.0	0.0	1.6	0.0	0.0	0.0	0.138	-0.117	0.278	-0.117	-0.117	-0.117	11.6	0.0	12.6	0.0	0.0	0.0	0.08	0.00	0.12	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0707	rpsC	14	0.0	0.0	0.4	0.0	0.0	0.0	-0.021	-0.021	0.103	-0.021	-0.021	-0.021	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.04	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0708	rplP	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0709	rpmC	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0710	rpsQ	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0711	atsA	42	121.7	109.8	120.5	113.8	110.6	98.4	0.109	-0.033	0.096	0.016	-0.023	-0.185	148.8	121.4	148.9	132.8	127.3	105.9	0.82	0.90	0.81	0.86	0.87	0.93	0.536550	1.000000	-
Rv0712	-	18	82.8	59.8	85.6	67.7	68.0	58.9	0.218	-0.219	0.264	-0.054	-0.048	-0.241	111.7	86.2	123.2	98.8	84.4	73.1	0.74	0.69	0.69	0.69	0.81	0.81	0.750000	1.000000	-
Rv0713	-	16	171.9	178.8	185.1	193.1	176.6	188.7	-0.083	-0.028	0.021	0.081	-0.045	0.048	206.3	211.9	219.4	215.6	201.8	208.2	0.83	0.84	0.84	0.90	0.88	0.91	0.999517	1.000000	-
Rv0714	rplN	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0715	rplX	5	0.0	1.0	0.0	1.0	0.0	0.0	-0.093	0.171	-0.093	0.167	-0.093	-0.093	0.0	10.0	0.0	14.8	0.0	0.0	0.00	0.10	0.00	0.07	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0716	rplE	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0717	rpsN	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0718	rpsH	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0719	rplF	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0720	rplR	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0721	rpsE	9	5.4	4.5	1.4	6.6	5.6	7.1	0.041	-0.084	-0.659	0.196	0.070	0.262	48.6	40.8	25.2	59.2	50.5	64.1	0.11	0.11	0.06	0.11	0.11	0.11	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0722	rpmD	1	33.8	55.7	6.3	65.8	60.5	29.7	-0.276	0.372	-2.055	0.592	0.479	-0.436	33.8	55.7	12.6	65.8	60.5	29.7	1.00	1.00	0.50	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0723	rplO	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0724	sppA	28	94.4	88.6	80.8	89.4	98.4	92.8	0.054	-0.033	-0.157	-0.020	0.111	0.031	107.2	93.6	94.3	98.8	108.0	102.0	0.88	0.95	0.86	0.90	0.91	0.91	0.957806	1.000000	-
Rv0724A	-	5	103.9	81.9	147.8	124.0	135.2	127.2	-0.199	-0.525	0.290	0.045	0.165	0.081	141.7	102.3	164.2	155.0	169.0	159.1	0.73	0.80	0.90	0.80	0.80	0.80	0.992325	1.000000	-
Rv0725c	-	14	114.2	105.2	114.4	98.8	114.8	111.3	0.054	-0.059	0.057	-0.145	0.062	0.019	141.0	122.7	139.3	129.7	146.2	119.9	0.81	0.86	0.82	0.76	0.79	0.93	0.920990	1.000000	-
Rv0726c	-	14	122.5	102.7	119.2	105.7	102.5	116.1	0.131	-0.113	0.094	-0.073	-0.116	0.056	131.9	115.0	139.1	120.0	102.5	135.4	0.93	0.89	0.86	0.88	1.00	0.86	0.538279	1.000000	-
Rv0727c	fucA	10	314.4	221.2	220.3	210.9	176.8	240.2	0.439	-0.059	-0.065	-0.126	-0.374	0.057	314.4	221.2	220.3	210.9	176.8	240.2	1.00	1.00	1.00	1.00	1.00	1.00	0.183598	1.000000	-
Rv0728c	serA2	8	134.3	120.0	123.6	118.0	111.0	153.4	0.081	-0.076	-0.035	-0.099	-0.183	0.266	161.2	137.1	164.8	134.9	126.9	175.3	0.83	0.88	0.75	0.88	0.88	0.88	0.996946	1.000000	-
Rv0729	xylB	17	291.3	260.6	248.1	269.6	269.7	260.5	0.126	-0.033	-0.102	0.016	0.016	-0.033	345.5	295.3	281.2	305.5	295.8	285.7	0.84	0.88	0.88	0.88	0.91	0.91	0.999285	1.000000	-
Rv0730	-	1	58.4	35.3	21.8	60.6	47.0	39.8	0.377	-0.275	-0.865	0.427	0.090	-0.124	58.4	35.3	21.8	60.6	47.0	39.8	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0731c	-	9	293.9	348.7	285.8	277.4	301.9	280.8	-0.020	0.223	-0.060	-0.102	0.018	-0.085	330.6	392.3	321.5	277.4	301.9	336.9	0.89	0.89	0.89	1.00	1.00	0.83	0.327934	1.000000	-
Rv0732	secY	26	0.1	0.0	0.0	0.0	0.0	0.0	0.035	-0.007	-0.007	-0.007	-0.007	-0.007	11.6	0.0	0.0	0.0	0.0	0.0	0.01	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0733	adk	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0734	mapA	8	110.6	166.3	143.7	156.2	153.7	168.4	-0.421	0.146	-0.058	0.058	0.036	0.163	132.7	177.4	176.9	197.3	189.2	192.4	0.83	0.94	0.81	0.79	0.81	0.88	0.894598	1.000000	-
Rv0735	sigL	6	311.2	265.1	293.4	354.9	313.6	296.0	0.025	-0.202	-0.058	0.212	0.036	-0.046	311.2	265.1	293.4	354.9	313.6	296.0	1.00	1.00	1.00	1.00	1.00	1.00	0.919460	1.000000	-
Rv0736	-	6	31.9	41.6	27.0	51.7	98.5	19.5	-0.439	-0.103	-0.642	0.181	1.048	-1.031	52.2	49.9	40.6	51.7	118.2	29.2	0.61	0.83	0.67	1.00	0.83	0.67	0.000155	0.003800	-
Rv0737	-	4	136.7	126.0	146.1	137.9	158.7	176.7	-0.102	-0.214	-0.009	-0.089	0.107	0.257	149.1	126.0	167.0	150.4	158.7	176.7	0.92	1.00	0.88	0.92	1.00	1.00	0.947924	1.000000	-
Rv0738	-	1	143.7	138.0	81.4	64.8	185.1	113.6	0.238	0.181	-0.545	-0.853	0.592	-0.088	143.7	138.0	81.4	64.8	185.1	113.6	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0739	-	17	203.5	258.8	233.6	226.2	241.7	259.0	-0.216	0.124	-0.021	-0.066	0.027	0.125	225.7	266.7	240.7	256.4	241.7	293.6	0.90	0.97	0.97	0.88	1.00	0.88	0.268258	1.000000	-
Rv0740	-	10	79.6	65.8	94.7	68.5	67.1	78.2	0.068	-0.188	0.306	-0.135	-0.161	0.045	119.3	82.3	118.4	97.8	79.0	82.3	0.67	0.80	0.80	0.70	0.85	0.95	0.541237	1.000000	-
Rv0741	-	3	56.0	33.8	43.8	39.1	43.0	49.5	0.310	-0.343	-0.012	-0.158	-0.034	0.147	63.0	33.8	52.5	58.6	43.0	49.5	0.89	1.00	0.83	0.67	1.00	1.00	0.382788	1.000000	-
Rv0742	PE_PGRS8	5	367.9	333.5	296.9	282.7	326.4	281.2	0.222	0.082	-0.083	-0.152	0.051	-0.160	459.8	333.5	296.9	282.7	326.4	281.2	0.80	1.00	1.00	1.00	1.00	1.00	0.332910	1.000000	-
Rv0743c	-	7	310.2	274.4	252.5	276.3	282.3	322.7	0.113	-0.060	-0.178	-0.051	-0.021	0.169	310.2	274.4	252.5	276.3	282.3	322.7	1.00	1.00	1.00	1.00	1.00	1.00	0.973893	1.000000	-
Rv0744c	-	9	20.9	28.8	26.4	25.5	28.9	37.6	-0.352	0.036	-0.072	-0.115	0.037	0.368	35.2	32.4	47.5	36.2	40.0	42.3	0.59	0.89	0.56	0.70	0.72	0.89	0.334716	1.000000	-
Rv0745	-	7	324.5	300.3	309.7	325.9	335.2	340.2	0.008	-0.102	-0.058	0.014	0.054	0.075	378.6	350.3	309.7	380.2	335.2	396.9	0.86	0.86	1.00	0.86	1.00	0.86	0.607198	1.000000	-
Rv0746	PE_PGRS9	14	74.0	73.5	61.0	67.5	74.7	59.6	0.106	0.098	-0.153	-0.018	0.120	-0.183	103.6	103.0	85.4	88.6	110.1	83.5	0.71	0.71	0.71	0.76	0.68	0.71	0.964639	1.000000	-
Rv0747	PE_PGRS10	12	195.8	192.3	183.9	189.6	178.8	154.5	0.099	0.073	0.011	0.054	-0.028	-0.233	220.3	230.7	200.7	213.3	195.1	185.4	0.89	0.83	0.92	0.89	0.92	0.83	0.981083	1.000000	-
Rv0748	-	2	320.8	419.1	377.0	333.0	344.1	391.4	-0.180	0.200	0.049	-0.128	-0.081	0.102	320.8	419.1	377.0	333.0	344.1	391.4	1.00	1.00	1.00	1.00	1.00	1.00	0.981287	1.000000	-
Rv0749	-	4	200.3	144.2	139.1	166.7	128.8	147.8	0.364	-0.096	-0.147	0.106	-0.254	-0.061	200.3	144.2	139.1	166.7	128.8	147.8	1.00	1.00	1.00	1.00	1.00	1.00	0.937451	1.000000	-
Rv0749A	-	1	88.3	81.8	34.4	56.9	85.7	85.8	0.275	0.171	-0.968	-0.319	0.233	0.234	88.3	81.8	34.4	56.9	85.7	85.8	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0750	-	4	190.5	136.0	119.7	128.7	126.3	136.0	0.436	-0.035	-0.213	-0.112	-0.139	-0.036	190.5	136.0	119.7	128.7	126.3	155.4	1.00	1.00	1.00	1.00	1.00	0.88	0.783720	1.000000	-
Rv0751c	mmsB	6	144.0	159.3	134.9	166.9	186.4	143.4	-0.110	0.031	-0.201	0.096	0.251	-0.116	144.0	173.8	134.9	176.7	186.4	143.4	1.00	0.92	1.00	0.94	1.00	1.00	0.660985	1.000000	-
Rv0752c	fadE9	14	120.4	128.9	140.8	134.7	139.5	130.7	-0.132	-0.038	0.084	0.023	0.072	-0.019	153.3	164.1	164.3	161.6	162.7	152.5	0.79	0.79	0.86	0.83	0.86	0.86	0.994115	1.000000	-
Rv0753c	mmsA	18	175.8	191.1	148.4	162.4	161.7	159.1	0.077	0.194	-0.160	-0.034	-0.040	-0.063	186.2	202.3	178.1	175.4	166.4	168.4	0.94	0.94	0.83	0.93	0.97	0.94	0.857765	1.000000	-
Rv0754	PE_PGRS11	27	189.0	180.3	178.2	180.3	162.4	166.0	0.100	0.033	0.017	0.034	-0.113	-0.082	212.7	190.9	196.3	189.7	182.7	186.8	0.89	0.94	0.91	0.95	0.89	0.89	0.942164	1.000000	-
Rv0755c	PPE12	51	18.3	18.0	14.9	16.6	17.8	19.3	0.052	0.029	-0.174	-0.056	0.020	0.112	103.8	65.4	101.6	98.0	67.3	73.0	0.18	0.27	0.15	0.17	0.26	0.26	0.500014	1.000000	-
Rv0755A	-	5	55.8	67.0	53.7	56.9	73.5	89.0	-0.223	0.021	-0.274	-0.199	0.145	0.405	93.0	95.8	76.7	94.8	105.0	127.2	0.60	0.70	0.70	0.60	0.70	0.70	0.936507	1.000000	-
Rv0756c	-	6	750.0	629.2	843.8	734.4	681.4	600.3	0.086	-0.166	0.255	0.055	-0.052	-0.233	750.0	629.2	843.8	734.4	681.4	600.3	1.00	1.00	1.00	1.00	1.00	1.00	0.587384	1.000000	-
Rv0757	phoP	10	3.0	5.6	0.6	1.4	1.9	7.3	-0.058	0.349	-0.558	-0.368	-0.264	0.565	17.8	11.1	12.6	14.2	12.7	16.1	0.17	0.50	0.05	0.10	0.15	0.45	0.002489	0.044332	-
Rv0758	phoR	16	4.3	11.1	2.5	5.6	3.3	7.2	-0.200	0.597	-0.499	-0.016	-0.358	0.189	20.6	22.3	27.2	22.2	13.3	17.6	0.21	0.50	0.09	0.25	0.25	0.41	0.014610	0.186240	-
Rv0759c	-	2	218.5	242.0	227.1	200.2	245.5	204.1	-0.028	0.116	0.026	-0.151	0.136	-0.124	218.5	242.0	227.1	200.2	245.5	204.1	1.00	1.00	1.00	1.00	1.00	1.00	0.932844	1.000000	-
Rv0760c	-	5	33.1	31.8	32.6	33.4	42.4	57.3	-0.188	-0.240	-0.209	-0.179	0.127	0.521	71.0	39.7	65.2	41.7	53.0	63.7	0.47	0.80	0.50	0.80	0.80	0.90	0.440009	1.000000	-
Rv0761c	adhB	12	76.7	69.2	78.0	118.4	99.3	78.0	-0.165	-0.304	-0.142	0.430	0.187	-0.142	98.6	75.5	124.8	137.5	113.5	93.6	0.78	0.92	0.62	0.86	0.88	0.83	0.358593	1.000000	-
Rv0762c	-	12	200.6	203.7	177.0	196.6	177.6	229.9	0.022	0.043	-0.154	-0.007	-0.150	0.214	218.9	212.6	184.7	202.2	177.6	229.9	0.92	0.96	0.96	0.97	1.00	1.00	0.769509	1.000000	-
Rv0763c	-	1	22.3	56.2	47.0	51.1	39.7	60.1	-0.902	0.261	0.027	0.136	-0.192	0.349	22.3	56.2	47.0	51.1	39.7	60.1	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0764c	cyp51	16	66.7	63.5	66.4	49.9	60.2	60.2	0.117	0.050	0.111	-0.270	-0.022	-0.021	103.3	78.1	85.0	64.7	77.0	74.1	0.65	0.81	0.78	0.77	0.78	0.81	0.697268	1.000000	-
Rv0765c	-	9	68.7	64.6	90.2	76.3	85.5	85.1	-0.179	-0.261	0.192	-0.037	0.119	0.111	103.0	89.4	95.5	85.8	128.3	109.4	0.67	0.72	0.94	0.89	0.67	0.78	0.206012	1.000000	-
Rv0766c	cyp123	23	32.6	28.5	39.6	30.4	38.9	30.5	-0.032	-0.196	0.214	-0.119	0.193	-0.113	70.2	57.1	70.0	72.3	61.7	54.0	0.46	0.50	0.57	0.42	0.63	0.57	0.745057	1.000000	-
Rv0767c	-	11	250.8	238.9	216.2	222.3	216.0	199.5	0.160	0.091	-0.050	-0.010	-0.051	-0.163	275.9	238.9	237.9	244.6	237.6	219.5	0.91	1.00	0.91	0.91	0.91	0.91	0.948079	1.000000	-
Rv0768	aldA	21	94.7	100.2	106.3	98.4	87.5	86.9	-0.014	0.063	0.145	0.038	-0.122	-0.132	112.6	127.5	124.1	106.9	118.6	110.6	0.84	0.79	0.86	0.92	0.74	0.79	0.300078	1.000000	-
Rv0769	-	16	96.9	89.2	80.2	80.9	78.3	96.9	0.146	0.034	-0.112	-0.100	-0.145	0.146	116.3	102.0	102.6	92.5	83.5	110.7	0.83	0.88	0.78	0.88	0.94	0.88	0.850742	1.000000	-
Rv0770	-	7	203.9	180.5	220.8	185.0	152.2	146.3	0.164	-0.008	0.276	0.027	-0.246	-0.301	203.9	180.5	237.8	185.0	152.2	146.3	1.00	1.00	0.93	1.00	1.00	1.00	0.843573	1.000000	-
Rv0771	-	8	27.9	30.5	29.2	26.8	36.8	46.1	-0.204	-0.093	-0.146	-0.251	0.141	0.431	47.8	54.3	46.8	46.0	45.3	56.7	0.58	0.56	0.62	0.58	0.81	0.81	0.834030	1.000000	-
Rv0772	purD	20	0.2	0.0	0.0	0.0	0.0	0.0	0.045	-0.009	-0.009	-0.009	-0.009	-0.009	11.6	0.0	0.0	0.0	0.0	0.0	0.02	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0773c	ggtA	19	40.3	44.1	54.1	43.8	44.4	49.6	-0.172	-0.057	0.212	-0.064	-0.049	0.097	60.5	49.3	66.3	54.3	56.2	55.4	0.67	0.89	0.82	0.81	0.79	0.89	0.463651	1.000000	-
Rv0774c	-	9	119.6	98.4	92.1	105.7	100.6	101.1	0.208	-0.062	-0.152	0.037	-0.031	-0.025	170.0	136.2	118.5	118.9	129.4	140.0	0.70	0.72	0.78	0.89	0.78	0.72	0.858869	1.000000	-
Rv0775	-	9	528.9	444.0	561.0	468.6	492.7	454.7	0.104	-0.146	0.189	-0.069	0.003	-0.112	528.9	444.0	561.0	468.6	492.7	454.7	1.00	1.00	1.00	1.00	1.00	1.00	0.975826	1.000000	-
Rv0776c	-	14	245.0	213.2	267.9	213.7	233.8	259.9	0.035	-0.161	0.162	-0.157	-0.030	0.119	285.8	248.7	288.5	272.0	272.8	303.2	0.86	0.86	0.93	0.79	0.86	0.86	0.902607	1.000000	-
Rv0777	purB	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0778	cyp126	17	87.0	89.1	77.6	80.1	89.7	79.1	0.052	0.085	-0.104	-0.061	0.093	-0.078	96.5	97.8	101.5	86.9	108.9	99.6	0.90	0.91	0.76	0.92	0.82	0.79	0.430514	1.000000	-
Rv0779c	-	6	95.0	94.2	53.6	62.4	69.6	81.6	0.303	0.291	-0.468	-0.266	-0.120	0.095	95.0	94.2	58.5	74.9	69.6	81.6	1.00	1.00	0.92	0.83	1.00	1.00	0.176950	1.000000	-
Rv0780	hemH	23	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0781	ptrBa	24	24.8	24.2	32.9	24.1	29.3	17.9	-0.035	-0.063	0.313	-0.071	0.166	-0.415	40.6	41.5	46.5	42.2	42.6	37.4	0.61	0.58	0.71	0.57	0.69	0.48	0.356601	1.000000	-
Rv0782	ptrBb	37	27.1	17.9	32.8	28.8	30.8	27.5	-0.018	-0.503	0.220	0.057	0.139	0.000	51.0	32.4	52.8	54.2	50.6	44.2	0.53	0.55	0.62	0.53	0.61	0.62	0.239213	1.000000	-
Rv0783c	emrB	23	44.6	42.6	41.5	37.5	41.5	37.6	0.112	0.053	0.020	-0.109	0.018	-0.107	62.8	63.2	57.9	56.3	56.1	59.7	0.71	0.67	0.72	0.67	0.74	0.63	0.926127	1.000000	-
Rv0784	-	8	68.4	20.6	122.6	63.7	85.7	38.6	0.036	-1.484	0.834	-0.060	0.341	-0.716	117.3	41.2	140.1	95.5	124.7	88.2	0.58	0.50	0.88	0.67	0.69	0.44	0.028681	0.313920	-
Rv0785	-	29	62.1	61.9	69.1	53.4	54.5	55.1	0.061	0.056	0.203	-0.140	-0.113	-0.098	90.1	85.5	91.1	80.1	70.3	69.5	0.69	0.72	0.76	0.67	0.78	0.79	0.857958	1.000000	-
Rv0786c	-	11	34.7	32.2	32.4	31.0	34.9	35.7	0.046	-0.048	-0.040	-0.098	0.050	0.081	47.8	50.6	54.9	48.7	54.8	43.6	0.73	0.64	0.59	0.64	0.64	0.82	0.924113	1.000000	-
Rv0787	-	14	121.2	125.1	121.8	120.4	126.8	109.5	0.005	0.048	0.012	-0.004	0.067	-0.136	145.5	140.1	148.3	129.7	142.0	139.4	0.83	0.89	0.82	0.93	0.89	0.79	0.920676	1.000000	-
Rv0787A	-	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0788	purQ	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0789c	-	7	51.3	53.8	56.9	54.7	42.5	51.9	-0.014	0.048	0.122	0.070	-0.258	0.001	63.3	53.8	72.4	57.4	45.8	55.9	0.81	1.00	0.79	0.95	0.93	0.93	0.660167	1.000000	-
Rv0790c	-	20	111.0	94.5	96.0	120.0	107.3	102.5	0.073	-0.148	-0.126	0.182	0.027	-0.035	141.6	121.9	132.4	150.0	143.1	132.3	0.78	0.78	0.72	0.80	0.75	0.78	0.993381	1.000000	-
Rv0791c	-	12	78.4	117.4	105.5	111.2	117.1	109.3	-0.419	0.135	-0.013	0.060	0.131	0.036	97.3	140.9	126.6	125.1	140.5	124.9	0.81	0.83	0.83	0.89	0.83	0.88	0.944980	1.000000	-
Rv0792c	-	17	118.2	152.2	109.2	130.6	116.7	134.5	-0.099	0.253	-0.208	0.040	-0.116	0.081	140.2	172.5	132.6	170.8	141.7	147.5	0.84	0.88	0.82	0.76	0.82	0.91	0.756634	1.000000	-
Rv0793	-	8	228.9	232.1	239.0	248.4	221.9	222.9	-0.020	-0.001	0.041	0.095	-0.064	-0.058	228.9	232.1	239.0	248.4	221.9	222.9	1.00	1.00	1.00	1.00	1.00	1.00	0.990920	1.000000	-
Rv0794c	-	15	175.4	136.4	147.7	144.9	163.6	152.8	0.187	-0.164	-0.053	-0.080	0.090	-0.006	213.3	146.2	164.1	163.0	188.8	183.3	0.82	0.93	0.90	0.89	0.87	0.83	0.855907	1.000000	-
Rv0795	-	4	229.6	235.4	211.5	247.8	223.2	172.5	0.060	0.095	-0.056	0.168	0.020	-0.342	229.6	235.4	211.5	247.8	255.0	172.5	1.00	1.00	1.00	1.00	0.88	1.00	0.802110	1.000000	-
Rv0796	-	21	287.5	305.6	328.2	312.6	271.9	292.2	-0.059	0.028	0.129	0.060	-0.138	-0.036	377.4	388.9	430.8	386.1	335.9	331.7	0.76	0.79	0.76	0.81	0.81	0.88	0.982134	1.000000	-
Rv0797	-	9	156.9	185.5	204.5	190.3	189.7	190.2	-0.240	-0.005	0.132	0.030	0.026	0.030	156.9	185.5	204.5	190.3	189.7	214.0	1.00	1.00	1.00	1.00	1.00	0.89	0.153407	0.957894	-
Rv0798c	cfp29	14	75.3	72.9	73.5	72.5	71.2	87.9	-0.004	-0.049	-0.038	-0.055	-0.079	0.205	102.0	92.8	85.7	101.6	90.7	94.6	0.74	0.79	0.86	0.71	0.79	0.93	0.700194	1.000000	-
Rv0799c	-	9	55.5	70.6	54.3	64.5	70.9	63.0	-0.170	0.150	-0.200	0.029	0.156	-0.003	75.0	84.7	75.2	91.6	79.7	80.9	0.74	0.83	0.72	0.70	0.89	0.78	0.975559	1.000000	-
Rv0800	pepC	13	145.4	143.7	136.6	133.1	151.0	108.7	0.089	0.072	0.002	-0.034	0.142	-0.315	182.9	162.4	154.4	162.2	163.6	128.5	0.79	0.88	0.88	0.82	0.92	0.85	0.959120	1.000000	-
Rv0801	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0802c	-	15	80.2	67.7	68.9	65.4	64.4	64.7	0.212	-0.017	0.007	-0.064	-0.084	-0.077	92.5	78.1	98.4	84.0	77.2	71.9	0.87	0.87	0.70	0.78	0.83	0.90	0.805747	1.000000	-
Rv0803	purL	32	0.5	0.0	0.0	0.0	0.0	0.0	0.107	-0.022	-0.022	-0.022	-0.022	-0.022	45.2	0.0	0.0	0.0	0.0	0.0	0.01	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0804	-	6	182.6	197.9	177.2	204.2	187.9	162.8	-0.022	0.091	-0.064	0.136	0.019	-0.183	182.6	237.5	177.2	204.2	225.5	195.3	1.00	0.83	1.00	1.00	0.83	0.83	0.141957	0.919495	-
Rv0805	-	15	185.3	142.2	166.2	97.9	109.5	141.6	0.388	0.018	0.235	-0.500	-0.345	0.011	185.3	152.4	191.8	100.1	113.2	141.6	1.00	0.93	0.87	0.98	0.97	1.00	0.002005	0.036692	-
Rv0806c	cpsY	41	118.2	137.6	94.3	159.2	129.9	135.2	-0.122	0.089	-0.433	0.292	0.009	0.065	137.1	152.5	112.1	167.4	134.8	154.0	0.86	0.90	0.84	0.95	0.96	0.88	0.006298	0.095690	-
Rv0807	-	2	58.8	86.2	104.4	78.9	92.4	58.1	-0.411	0.105	0.367	-0.015	0.200	-0.427	70.5	86.2	104.4	78.9	92.4	116.2	0.83	1.00	1.00	1.00	1.00	0.50	0.381159	1.000000	-
Rv0808	purF	25	0.5	1.2	0.3	0.6	0.9	0.4	-0.033	0.136	-0.106	-0.017	0.071	-0.065	13.2	15.2	12.6	14.7	15.7	10.1	0.04	0.08	0.02	0.04	0.06	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0809	purM	11	0.0	0.0	0.0	0.0	1.3	0.0	-0.062	-0.062	-0.062	-0.062	0.275	-0.062	0.0	0.0	0.0	0.0	28.9	0.0	0.00	0.00	0.00	0.00	0.05	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0810c	-	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0811c	-	15	0.4	0.0	0.0	0.0	0.0	0.4	0.067	-0.034	-0.034	-0.034	-0.034	0.066	16.4	0.0	0.0	0.0	0.0	10.8	0.02	0.00	0.00	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0812	-	15	2.2	4.3	1.7	1.0	1.5	2.3	0.000	0.383	-0.099	-0.260	-0.139	0.026	19.4	18.6	12.6	22.0	15.0	11.4	0.11	0.23	0.13	0.04	0.10	0.20	0.240298	1.000000	-
Rv0813c	-	13	213.0	205.5	243.7	247.5	210.9	238.2	-0.086	-0.137	0.104	0.125	-0.101	0.071	213.0	205.5	243.7	247.5	210.9	238.2	1.00	1.00	1.00	1.00	1.00	1.00	0.663980	1.000000	-
Rv0814c	sseC2	2	307.9	328.8	356.1	320.7	336.5	241.7	-0.033	0.060	0.173	0.024	0.092	-0.376	307.9	328.8	356.1	320.7	336.5	241.7	1.00	1.00	1.00	1.00	1.00	1.00	0.604576	1.000000	-
Rv0815c	cysA2	14	176.9	187.2	188.9	194.7	196.3	195.0	-0.099	-0.020	-0.007	0.036	0.047	0.038	176.9	187.2	195.9	194.7	196.3	195.0	1.00	1.00	0.96	1.00	1.00	1.00	0.944657	1.000000	-
Rv0816c	thiX	3	171.7	125.9	137.6	117.4	91.4	61.0	0.528	0.095	0.220	-0.002	-0.345	-0.892	171.7	188.8	165.2	117.4	137.1	61.0	1.00	0.67	0.83	1.00	0.67	1.00	0.071042	0.604860	-
Rv0817c	-	14	0.5	0.4	0.0	0.0	0.0	0.0	0.104	0.060	-0.043	-0.043	-0.043	-0.043	22.6	10.4	0.0	0.0	0.0	0.0	0.02	0.04	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0818	-	7	132.0	142.5	164.8	286.1	363.6	152.6	-0.630	-0.523	-0.320	0.458	0.799	-0.428	132.0	142.5	164.8	286.1	363.6	152.6	1.00	1.00	1.00	1.00	1.00	1.00	0.000024	0.000695	-
Rv0819	-	10	166.5	117.8	151.8	106.9	170.3	110.6	0.269	-0.213	0.140	-0.347	0.301	-0.300	172.2	130.9	151.8	114.5	170.3	110.6	0.97	0.90	1.00	0.93	1.00	1.00	0.241811	1.000000	-
Rv0820	phoT	10	23.7	33.9	41.3	78.4	133.7	24.6	-1.086	-0.646	-0.396	0.453	1.186	-1.042	37.4	42.4	51.6	90.4	148.5	28.9	0.63	0.80	0.80	0.87	0.90	0.85	0.000000	0.000000	-
Rv0821c	phoY2	5	22.8	27.6	49.3	36.5	28.9	43.8	-0.516	-0.290	0.448	0.060	-0.233	0.293	24.5	27.6	54.8	39.1	28.9	43.8	0.93	1.00	0.90	0.93	1.00	1.00	0.005976	0.092293	-
Rv0822c	-	27	160.2	155.7	161.4	155.0	160.5	181.0	-0.018	-0.058	-0.008	-0.065	-0.016	0.153	170.8	155.7	167.6	163.0	163.5	187.9	0.94	1.00	0.96	0.95	0.98	0.96	0.731095	1.000000	-
Rv0823c	-	16	300.6	266.2	304.0	274.0	266.3	289.4	0.084	-0.089	0.099	-0.048	-0.088	0.030	300.6	283.9	313.8	299.0	274.9	308.7	1.00	0.94	0.97	0.92	0.97	0.94	0.735476	1.000000	-
Rv0824c	desA1	18	0.0	0.0	0.0	0.0	0.0	0.3	-0.014	-0.014	-0.014	-0.014	-0.014	0.070	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0825c	-	10	174.3	182.4	172.5	182.3	158.1	167.1	0.012	0.076	-0.002	0.075	-0.124	-0.047	180.3	182.4	172.5	182.3	158.1	167.1	0.97	1.00	1.00	1.00	1.00	1.00	0.961428	1.000000	-
Rv0826	-	18	200.1	193.7	229.8	202.4	183.1	193.1	-0.002	-0.048	0.193	0.014	-0.126	-0.052	203.9	205.1	236.4	214.3	183.1	198.6	0.98	0.94	0.97	0.94	1.00	0.97	0.851922	1.000000	-
Rv0827c	-	3	207.8	206.0	234.6	174.0	158.8	223.9	0.048	0.036	0.219	-0.202	-0.329	0.153	207.8	206.0	234.6	174.0	158.8	223.9	1.00	1.00	1.00	1.00	1.00	1.00	0.878139	1.000000	-
Rv0828c	-	10	150.0	146.0	131.7	132.3	149.3	139.1	0.082	0.045	-0.099	-0.093	0.076	-0.023	173.1	153.7	138.7	141.8	157.1	154.5	0.87	0.95	0.95	0.93	0.95	0.90	0.980898	1.000000	-
Rv0829	-	3	127.6	160.7	154.3	126.8	112.2	110.6	-0.048	0.274	0.217	-0.056	-0.225	-0.245	143.5	160.7	185.1	126.8	112.2	110.6	0.89	1.00	0.83	1.00	1.00	1.00	0.894312	1.000000	-
Rv0830	-	18	248.4	226.8	241.4	263.7	243.0	256.1	0.011	-0.118	-0.030	0.095	-0.021	0.054	253.1	233.2	255.6	263.7	243.0	256.1	0.98	0.97	0.94	1.00	1.00	1.00	0.736215	1.000000	-
Rv0831c	-	18	155.0	182.5	170.9	159.1	172.3	185.2	-0.136	0.093	0.001	-0.100	0.012	0.114	157.9	182.5	181.0	159.1	172.3	185.2	0.98	1.00	0.94	1.00	1.00	1.00	0.463851	1.000000	-
Rv0832	PE_PGRS12	3	305.6	362.0	242.4	336.5	315.1	241.4	0.024	0.265	-0.304	0.161	0.067	-0.310	305.6	434.4	363.5	336.5	315.1	362.1	1.00	0.83	0.67	1.00	1.00	0.67	0.374224	1.000000	-
Rv0833	PE_PGRS13	10	66.8	76.4	74.5	54.5	74.2	61.5	-0.023	0.157	0.123	-0.295	0.118	-0.134	91.1	117.6	106.4	81.7	106.1	123.1	0.73	0.65	0.70	0.67	0.70	0.50	0.589186	1.000000	-
Rv0834c	PE_PGRS14	23	159.4	193.1	165.2	163.5	151.2	153.4	-0.042	0.227	0.008	-0.007	-0.116	-0.096	186.5	201.9	180.9	176.2	165.6	168.0	0.86	0.96	0.91	0.93	0.91	0.91	0.910108	1.000000	-
Rv0835	lpqQ	14	91.3	90.8	92.6	106.9	86.3	109.6	-0.073	-0.079	-0.053	0.145	-0.150	0.178	106.5	94.2	103.7	109.6	92.9	113.6	0.86	0.96	0.89	0.98	0.93	0.96	0.765961	1.000000	-
Rv0836c	-	8	217.0	205.1	185.0	187.7	194.5	166.1	0.168	0.089	-0.057	-0.036	0.014	-0.207	248.0	205.1	185.0	187.7	222.3	166.1	0.88	1.00	1.00	1.00	0.88	1.00	0.341835	1.000000	-
Rv0837c	-	22	187.9	204.5	216.3	217.2	211.4	193.4	-0.123	-0.004	0.075	0.081	0.042	-0.083	213.9	214.3	226.6	224.0	216.3	197.9	0.88	0.95	0.95	0.97	0.98	0.98	0.767604	1.000000	-
Rv0838	lpqR	7	162.2	167.1	153.4	144.1	167.8	176.4	0.003	0.044	-0.075	-0.162	0.051	0.121	162.2	167.1	153.4	144.1	167.8	176.4	1.00	1.00	1.00	1.00	1.00	1.00	0.927125	1.000000	-
Rv0839	-	10	124.8	125.8	126.0	134.8	124.4	130.6	-0.032	-0.021	-0.019	0.075	-0.037	0.031	144.0	139.7	140.0	134.8	130.9	130.6	0.87	0.90	0.90	1.00	0.95	1.00	0.601185	1.000000	-
Rv0840c	pip	8	23.5	13.4	9.7	10.1	14.0	17.4	0.534	-0.100	-0.416	-0.383	-0.052	0.186	31.3	17.8	22.3	20.2	17.2	25.3	0.75	0.75	0.44	0.50	0.81	0.69	0.014772	0.187706	-
Rv0841	-	3	163.9	198.4	162.5	146.6	223.1	202.4	-0.154	0.115	-0.165	-0.309	0.281	0.143	163.9	198.4	162.5	146.6	223.1	202.4	1.00	1.00	1.00	1.00	1.00	1.00	0.932439	1.000000	-
Rv0842	-	21	80.6	99.8	82.7	95.8	92.4	97.8	-0.173	0.119	-0.139	0.062	0.013	0.092	99.6	116.4	99.2	131.1	114.1	114.2	0.81	0.86	0.83	0.73	0.81	0.86	0.641643	1.000000	-
Rv0843	-	17	105.6	133.3	112.5	123.7	110.8	129.3	-0.168	0.155	-0.080	0.051	-0.101	0.113	128.2	141.6	123.4	153.9	129.9	141.9	0.82	0.94	0.91	0.80	0.85	0.91	0.634336	1.000000	-
Rv0844c	narL	9	569.5	444.1	444.4	481.1	485.2	421.3	0.261	-0.094	-0.093	0.021	0.033	-0.169	569.5	444.1	444.4	481.1	485.2	421.3	1.00	1.00	1.00	1.00	1.00	1.00	0.575357	1.000000	-
Rv0845	-	23	62.7	66.0	65.2	55.5	68.1	54.1	0.017	0.085	0.068	-0.145	0.128	-0.180	83.2	86.7	93.7	79.8	78.4	59.3	0.75	0.76	0.70	0.70	0.87	0.91	0.215912	1.000000	-
Rv0846c	-	28	41.0	51.9	50.8	44.8	44.8	41.7	-0.144	0.163	0.134	-0.031	-0.028	-0.123	61.5	69.2	67.7	66.0	61.3	64.8	0.67	0.75	0.75	0.68	0.73	0.64	0.854116	1.000000	-
Rv0847	lpqS	6	239.8	205.3	215.0	227.5	172.7	180.3	0.209	-0.010	0.055	0.135	-0.253	-0.193	308.3	205.3	258.1	273.0	207.2	196.7	0.78	1.00	0.83	0.83	0.83	0.92	0.825842	1.000000	-
Rv0848	cysK2	26	66.8	59.4	76.1	66.7	69.9	62.9	-0.004	-0.160	0.172	-0.005	0.058	-0.084	100.2	81.3	101.5	81.3	84.6	68.2	0.67	0.73	0.75	0.82	0.83	0.92	0.122691	0.833964	-
Rv0849	-	21	121.4	130.7	121.4	117.8	113.0	126.3	-0.004	0.098	-0.004	-0.046	-0.103	0.050	136.6	156.9	150.0	145.5	135.6	139.6	0.89	0.83	0.81	0.81	0.83	0.90	0.877673	1.000000	-
Rv0850	-	8	52.5	78.4	60.6	57.9	64.2	66.8	-0.250	0.286	-0.061	-0.121	0.017	0.070	57.3	96.5	107.7	73.1	85.6	89.0	0.92	0.81	0.56	0.79	0.75	0.75	0.139838	0.913603	-
Rv0851c	-	9	100.6	81.3	106.6	86.4	119.0	80.9	0.067	-0.225	0.147	-0.141	0.299	-0.230	129.4	97.5	147.6	122.8	142.8	97.1	0.78	0.83	0.72	0.70	0.83	0.83	0.973044	1.000000	-
Rv0852	fadD16	13	68.9	61.8	56.8	57.3	73.7	83.6	0.037	-0.109	-0.221	-0.209	0.128	0.300	76.7	69.8	77.7	69.8	83.3	103.6	0.90	0.88	0.73	0.82	0.88	0.81	0.444435	1.000000	-
Rv0853c	pdc	23	103.3	102.7	114.5	127.9	100.4	114.3	-0.094	-0.101	0.048	0.203	-0.133	0.047	129.5	139.0	135.0	173.1	131.9	138.4	0.80	0.74	0.85	0.74	0.76	0.83	0.530267	1.000000	-
Rv0854	-	6	112.1	100.4	109.0	96.6	96.2	121.3	0.078	-0.074	0.039	-0.126	-0.132	0.187	144.1	150.6	163.4	124.2	128.3	145.5	0.78	0.67	0.67	0.78	0.75	0.83	0.997686	1.000000	-
Rv0855	far	12	90.0	89.1	87.9	106.7	80.7	108.9	-0.058	-0.071	-0.090	0.176	-0.207	0.204	108.0	101.9	105.5	116.4	84.2	118.8	0.83	0.88	0.83	0.92	0.96	0.92	0.850737	1.000000	-
Rv0856	-	5	81.5	94.6	65.0	98.6	96.4	125.0	-0.188	0.016	-0.492	0.073	0.041	0.400	94.0	118.3	81.3	123.3	120.5	138.9	0.87	0.80	0.80	0.80	0.80	0.90	0.704133	1.000000	-
Rv0857	-	6	204.7	186.0	174.1	149.0	151.0	193.0	0.210	0.075	-0.018	-0.236	-0.216	0.127	245.7	186.0	208.9	157.7	151.0	210.5	0.83	1.00	0.83	0.94	1.00	0.92	0.556092	1.000000	-
Rv0858c	-	19	157.9	201.4	163.5	189.6	156.9	170.4	-0.130	0.211	-0.081	0.126	-0.139	-0.023	173.1	218.6	177.6	196.4	170.4	196.2	0.91	0.92	0.92	0.96	0.92	0.87	0.648788	1.000000	-
Rv0859	fadA	7	305.9	291.0	282.0	324.4	289.7	244.8	0.077	0.007	-0.038	0.161	0.001	-0.238	338.1	291.0	282.0	324.4	289.7	244.8	0.90	1.00	1.00	1.00	1.00	1.00	0.754181	1.000000	-
Rv0860	fadB	21	98.9	106.4	98.2	92.8	85.8	104.6	0.016	0.116	0.006	-0.071	-0.178	0.092	122.2	135.4	121.3	112.5	97.4	115.6	0.81	0.79	0.81	0.83	0.88	0.90	0.868591	1.000000	-
Rv0861c	ercc3	22	79.1	67.7	84.7	84.5	81.4	85.5	-0.023	-0.234	0.070	0.066	0.015	0.083	106.6	78.4	120.3	103.3	96.8	104.6	0.74	0.86	0.70	0.82	0.84	0.82	0.780327	1.000000	-
Rv0862c	-	27	137.6	111.4	131.1	133.9	116.1	112.0	0.149	-0.144	0.081	0.110	-0.088	-0.138	171.5	150.4	168.5	159.5	156.7	147.5	0.80	0.74	0.78	0.84	0.74	0.76	0.877013	1.000000	-
Rv0863	-	6	117.5	112.9	103.3	133.7	113.7	154.8	-0.060	-0.114	-0.237	0.120	-0.105	0.324	162.7	135.5	137.8	160.4	113.7	185.7	0.72	0.83	0.75	0.83	1.00	0.83	0.766857	1.000000	-
Rv0864	moaC	11	213.9	224.0	214.8	280.3	225.9	218.1	-0.099	-0.034	-0.093	0.283	-0.022	-0.072	213.9	246.4	225.0	298.4	225.9	266.5	1.00	0.91	0.95	0.94	1.00	0.82	0.139005	0.911551	-
Rv0865	mog	8	143.9	144.9	135.3	137.8	140.4	160.6	0.001	0.010	-0.085	-0.059	-0.033	0.154	150.1	144.9	135.3	143.8	149.8	183.5	0.96	1.00	1.00	0.96	0.94	0.88	0.765604	1.000000	-
Rv0866	moaE2	3	125.8	95.2	134.2	129.8	115.5	127.6	0.050	-0.334	0.139	0.094	-0.069	0.070	125.8	95.2	134.2	129.8	138.6	153.1	1.00	1.00	1.00	1.00	0.83	0.83	0.663718	1.000000	-
Rv0867c	rpfA	8	86.1	119.1	124.6	106.6	106.2	144.3	-0.391	0.054	0.117	-0.098	-0.104	0.322	98.4	173.2	166.1	127.9	130.6	165.0	0.88	0.69	0.75	0.83	0.81	0.88	0.586938	1.000000	-
Rv0868c	moaD2	6	224.2	289.9	206.6	225.4	217.5	275.2	-0.095	0.269	-0.210	-0.088	-0.138	0.195	269.0	289.9	206.6	270.4	261.0	275.2	0.83	1.00	1.00	0.83	0.83	1.00	0.324076	1.000000	-
Rv0869c	moaA	14	205.0	200.8	231.8	198.2	230.4	191.1	-0.031	-0.060	0.142	-0.078	0.134	-0.130	246.0	216.2	259.6	198.2	248.1	205.8	0.83	0.93	0.89	1.00	0.93	0.93	0.395418	1.000000	-
Rv0870c	-	4	205.6	139.1	185.5	153.1	153.6	205.5	0.237	-0.311	0.092	-0.177	-0.173	0.236	224.3	139.1	212.0	167.0	175.5	205.5	0.92	1.00	0.88	0.92	0.88	1.00	0.972984	1.000000	-
Rv0871	cspB	4	168.0	166.0	106.4	47.8	40.6	196.5	0.459	0.442	-0.176	-1.254	-1.465	0.679	224.0	166.0	141.9	63.7	54.1	196.5	0.75	1.00	0.75	0.75	0.75	1.00	0.000388	0.008516	-
Rv0872c	PE_PGRS15	25	237.7	234.0	219.3	212.8	198.3	204.4	0.124	0.101	0.010	-0.032	-0.132	-0.089	297.1	292.5	281.1	249.4	215.5	243.4	0.80	0.80	0.78	0.85	0.92	0.84	0.781767	1.000000	-
Rv0873	fadE10	33	195.7	204.4	208.9	128.4	124.8	200.5	0.140	0.201	0.232	-0.450	-0.488	0.174	210.6	210.8	229.8	139.6	132.9	210.1	0.93	0.97	0.91	0.92	0.94	0.95	0.014459	0.185500	-
Rv0874c	-	9	286.8	230.7	255.2	280.4	231.1	261.5	0.152	-0.156	-0.013	0.120	-0.154	0.021	336.7	259.5	306.2	360.5	346.6	294.2	0.85	0.89	0.83	0.78	0.67	0.89	0.832858	1.000000	-
Rv0875c	-	11	117.0	162.1	116.4	101.6	66.9	146.8	-0.017	0.437	-0.024	-0.211	-0.781	0.298	133.2	178.4	134.8	115.7	77.4	161.5	0.88	0.91	0.86	0.88	0.86	0.91	0.202964	1.000000	-
Rv0876c	-	24	140.9	163.5	138.8	111.2	109.9	125.2	0.095	0.303	0.074	-0.233	-0.250	-0.069	153.7	170.6	151.4	121.4	122.7	130.7	0.92	0.96	0.92	0.92	0.90	0.96	0.660876	1.000000	-
Rv0877	-	15	362.2	275.9	327.4	221.4	180.0	235.1	0.433	0.047	0.289	-0.265	-0.556	-0.180	379.1	275.9	338.7	221.4	192.9	235.1	0.96	1.00	0.97	1.00	0.93	1.00	0.044211	0.439908	-
Rv0878c	PPE13	14	122.2	121.7	120.1	114.7	99.6	112.4	0.082	0.077	0.058	-0.005	-0.199	-0.033	197.3	189.3	210.1	185.3	174.3	196.7	0.62	0.64	0.57	0.62	0.57	0.57	0.999091	1.000000	-
Rv0879c	-	2	30.2	63.8	48.5	40.2	107.8	111.1	-1.030	-0.064	-0.428	-0.671	0.649	0.691	60.5	127.6	96.9	80.3	215.6	222.2	0.50	0.50	0.50	0.50	0.50	0.50	0.003423	0.057864	-
Rv0880	-	1	26.2	25.4	28.1	27.6	29.8	20.3	0.001	-0.039	0.084	0.062	0.154	-0.306	26.2	25.4	28.1	27.6	29.8	20.3	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0881	-	13	104.3	112.0	110.7	119.3	113.8	122.8	-0.120	-0.023	-0.038	0.065	-0.000	0.105	123.3	112.0	125.2	133.0	118.4	133.1	0.85	1.00	0.88	0.90	0.96	0.92	0.575810	1.000000	-
Rv0882	-	1	138.9	244.5	311.3	303.8	127.2	140.5	-0.586	0.208	0.550	0.515	-0.709	-0.571	138.9	244.5	311.3	303.8	127.2	140.5	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0883c	-	6	0.6	1.7	3.2	0.8	2.0	2.5	-0.267	-0.020	0.265	-0.222	0.035	0.137	11.6	10.2	37.9	14.8	11.8	14.8	0.06	0.17	0.08	0.06	0.17	0.17	0.058880	0.530526	-
Rv0884c	serC	12	14.7	15.4	15.5	21.2	37.1	5.8	-0.243	-0.192	-0.181	0.170	0.856	-1.111	48.0	30.8	46.6	34.7	55.7	15.4	0.31	0.50	0.33	0.61	0.67	0.38	0.009842	0.137792	-
Rv0885	-	12	92.4	88.3	105.0	96.9	107.6	94.4	-0.073	-0.135	0.103	-0.008	0.136	-0.043	110.9	106.0	126.0	116.2	117.4	113.3	0.83	0.83	0.83	0.83	0.92	0.83	0.996939	1.000000	-
Rv0886	fprB	22	145.4	138.4	149.1	124.5	163.3	145.9	0.010	-0.059	0.044	-0.206	0.171	0.014	165.5	152.3	172.6	149.4	179.6	160.5	0.88	0.91	0.86	0.83	0.91	0.91	0.961831	1.000000	-
Rv0887c	-	4	62.8	33.0	53.0	53.8	65.0	63.7	0.171	-0.664	-0.053	-0.034	0.217	0.189	62.8	37.7	53.0	71.8	65.0	63.7	1.00	0.88	1.00	0.75	1.00	1.00	0.101786	0.747564	-
Rv0888	-	26	124.4	106.2	114.6	125.1	116.9	106.3	0.102	-0.116	-0.012	0.109	0.016	-0.116	164.5	131.5	152.7	145.6	141.4	125.6	0.76	0.81	0.75	0.86	0.83	0.85	0.962947	1.000000	-
Rv0889c	citA	10	173.0	164.2	206.7	149.6	172.6	143.5	0.039	-0.034	0.289	-0.165	0.036	-0.223	207.5	164.2	217.6	166.2	172.6	159.4	0.83	1.00	0.95	0.90	1.00	0.90	0.395605	1.000000	-
Rv0890c	-	44	258.5	243.5	254.4	240.1	241.3	229.4	0.079	-0.006	0.056	-0.026	-0.019	-0.090	296.7	267.9	294.5	273.2	279.4	252.4	0.87	0.91	0.86	0.88	0.86	0.91	0.996615	1.000000	-
Rv0891c	-	23	128.5	115.6	140.3	129.4	134.8	130.3	-0.015	-0.160	0.108	-0.005	0.053	0.005	138.5	123.7	157.5	133.2	141.0	130.3	0.93	0.93	0.89	0.97	0.96	1.00	0.554940	1.000000	-
Rv0892	-	36	47.6	58.8	61.1	54.9	45.7	50.1	-0.141	0.138	0.187	0.045	-0.194	-0.076	65.9	83.1	84.5	75.0	59.9	66.7	0.72	0.71	0.72	0.73	0.76	0.75	0.605706	1.000000	-
Rv0893c	-	22	32.1	27.8	31.8	29.0	24.3	30.5	0.116	-0.062	0.104	-0.012	-0.224	0.051	68.4	58.3	56.0	65.9	48.7	44.7	0.47	0.48	0.57	0.44	0.50	0.68	0.190031	1.000000	-
Rv0894	-	14	45.4	44.3	43.7	44.5	37.9	45.6	0.054	0.022	0.004	0.027	-0.179	0.060	73.3	65.3	87.4	88.9	55.8	71.0	0.62	0.68	0.50	0.50	0.68	0.64	0.798853	1.000000	-
Rv0895	-	26	198.3	170.0	190.6	166.1	181.9	176.1	0.132	-0.084	0.077	-0.117	0.011	-0.034	209.0	192.1	210.9	175.1	201.2	199.1	0.95	0.88	0.90	0.95	0.90	0.88	0.662388	1.000000	-
Rv0896	gltA	23	25.2	8.8	33.6	4.0	5.8	6.1	0.677	-0.453	1.029	-1.079	-0.812	-0.768	31.7	14.5	44.2	21.0	16.6	14.0	0.80	0.61	0.76	0.19	0.35	0.43	0.000000	0.000000	-
Rv0897c	-	18	156.9	134.3	153.4	148.1	142.1	138.8	0.105	-0.112	0.073	0.023	-0.034	-0.067	180.3	142.2	172.6	159.9	170.6	156.1	0.87	0.94	0.89	0.93	0.83	0.89	0.924717	1.000000	-
Rv0898c	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0899	ompA	18	54.6	51.2	57.6	47.1	41.0	50.7	0.107	0.021	0.177	-0.088	-0.267	0.009	73.8	59.4	74.1	60.5	54.7	57.1	0.74	0.86	0.78	0.78	0.75	0.89	0.840009	1.000000	-
Rv0900	-	2	177.2	132.2	195.2	206.6	189.5	239.8	-0.099	-0.507	0.038	0.117	-0.005	0.327	177.2	132.2	195.2	206.6	189.5	239.8	1.00	1.00	1.00	1.00	1.00	1.00	0.283627	1.000000	-
Rv0901	-	9	210.8	174.8	219.8	189.0	257.7	200.2	0.014	-0.249	0.073	-0.139	0.298	-0.059	218.9	185.1	247.2	189.0	257.7	200.2	0.96	0.94	0.89	1.00	1.00	1.00	0.649012	1.000000	-
Rv0902c	prrB	12	11.6	0.8	13.0	0.0	0.0	0.4	0.831	-0.673	0.955	-0.896	-0.896	-0.787	27.7	10.0	26.1	0.0	0.0	9.4	0.42	0.08	0.50	0.00	0.00	0.04	0.000000	0.000000	-
Rv0903c	prrA	8	11.3	0.0	8.7	0.0	0.0	0.0	0.970	-0.737	0.715	-0.737	-0.737	-0.737	34.0	0.0	23.1	0.0	0.0	0.0	0.33	0.00	0.38	0.00	0.00	0.00	0.000005	0.000163	-
Rv0904c	accD3	18	83.1	94.4	89.6	56.5	72.0	74.2	0.081	0.255	0.183	-0.437	-0.113	-0.073	99.7	106.2	97.7	67.8	83.7	83.5	0.83	0.89	0.92	0.83	0.86	0.89	0.532406	1.000000	-
Rv0905	echA6	8	99.9	115.0	126.1	88.9	104.2	165.7	-0.214	-0.020	0.108	-0.373	-0.155	0.489	119.9	122.6	155.2	97.0	128.3	189.4	0.83	0.94	0.81	0.92	0.81	0.88	0.646047	1.000000	-
Rv0906	-	14	209.7	220.1	199.2	213.1	199.7	171.7	0.051	0.119	-0.021	0.073	-0.018	-0.230	238.0	256.8	242.5	223.7	232.9	218.6	0.88	0.86	0.82	0.95	0.86	0.79	0.765812	1.000000	-
Rv0907	-	33	40.4	44.6	51.4	43.0	46.7	42.6	-0.132	-0.005	0.180	-0.054	0.054	-0.064	58.9	56.6	73.8	66.5	60.4	57.4	0.69	0.79	0.70	0.65	0.77	0.74	0.645585	1.000000	-
Rv0908	ctpE	29	127.4	116.9	112.4	120.3	125.8	118.5	0.081	-0.039	-0.093	0.001	0.063	-0.020	151.9	135.6	135.8	134.2	145.9	137.5	0.84	0.86	0.83	0.90	0.86	0.86	0.995032	1.000000	-
Rv0909	-	2	3.8	12.7	10.9	7.0	9.5	17.5	-0.797	0.216	0.062	-0.340	-0.074	0.564	22.6	16.9	21.8	14.1	19.0	23.4	0.17	0.75	0.50	0.50	0.50	0.75	0.668913	1.000000	-
Rv0910	-	7	19.1	32.1	18.7	33.7	43.7	31.3	-0.527	0.095	-0.550	0.154	0.485	0.060	33.5	50.0	43.7	54.4	61.2	43.8	0.57	0.64	0.43	0.62	0.71	0.71	0.768692	1.000000	-
Rv0911	-	12	48.8	45.3	41.5	49.4	37.0	42.8	0.130	0.034	-0.079	0.148	-0.226	-0.041	58.5	49.4	49.8	52.3	37.0	46.6	0.83	0.92	0.83	0.94	1.00	0.92	0.306183	1.000000	-
Rv0912	-	4	254.4	126.7	217.2	187.2	253.8	167.7	0.331	-0.646	0.108	-0.102	0.328	-0.255	254.4	169.0	217.2	224.6	253.8	167.7	1.00	0.75	1.00	0.83	1.00	1.00	0.288875	1.000000	-
Rv0913c	-	38	32.0	31.5	33.1	22.8	26.9	22.2	0.162	0.142	0.206	-0.252	-0.054	-0.283	57.0	52.0	57.2	42.6	40.0	39.2	0.56	0.61	0.58	0.54	0.67	0.57	0.437965	1.000000	-
Rv0914c	-	15	197.5	197.8	161.7	201.3	172.1	179.0	0.092	0.095	-0.188	0.120	-0.100	-0.046	227.8	228.3	179.7	226.5	191.3	198.8	0.87	0.87	0.90	0.89	0.90	0.90	0.992018	1.000000	-
Rv0915c	PPE14	15	144.3	132.1	105.3	134.1	111.2	105.5	0.232	0.110	-0.204	0.130	-0.129	-0.202	202.9	152.4	166.2	177.4	123.5	137.6	0.71	0.87	0.63	0.76	0.90	0.77	0.508013	1.000000	-
Rv0916c	PE7	5	118.3	89.6	77.4	110.6	88.8	88.7	0.294	-0.088	-0.287	0.201	-0.100	-0.103	147.9	112.1	96.8	110.6	111.0	126.6	0.80	0.80	0.80	1.00	0.80	0.70	0.410342	1.000000	-
Rv0917	betP	40	125.1	106.6	107.9	105.1	111.6	99.3	0.188	-0.034	-0.017	-0.054	0.029	-0.132	187.7	139.8	148.9	157.6	146.3	120.3	0.67	0.76	0.72	0.67	0.76	0.82	0.402692	1.000000	-
Rv0918	-	8	240.2	236.0	280.0	204.1	235.1	246.2	-0.000	-0.025	0.217	-0.230	-0.031	0.035	240.2	236.0	280.0	204.1	235.1	246.2	1.00	1.00	1.00	1.00	1.00	1.00	0.756596	1.000000	-
Rv0919	-	8	265.8	268.0	252.0	289.0	273.5	261.1	-0.013	-0.001	-0.088	0.106	0.027	-0.038	265.8	268.0	268.8	289.0	273.5	261.1	1.00	1.00	0.94	1.00	1.00	1.00	0.945253	1.000000	-
Rv0920c	-	21	77.4	78.4	78.6	79.0	79.4	71.3	0.001	0.018	0.022	0.028	0.036	-0.111	92.0	86.6	91.7	88.8	83.4	90.7	0.84	0.90	0.86	0.89	0.95	0.79	0.763428	1.000000	-
Rv0921	-	7	80.3	80.1	67.4	89.0	76.8	72.5	0.045	0.042	-0.191	0.185	-0.015	-0.094	84.3	80.1	67.4	89.0	82.7	78.0	0.95	1.00	1.00	1.00	0.93	0.93	0.826223	1.000000	-
Rv0922	-	16	106.6	110.2	102.3	105.2	98.8	116.0	0.001	0.047	-0.056	-0.017	-0.104	0.118	111.2	113.8	109.1	105.2	98.8	128.0	0.96	0.97	0.94	1.00	1.00	0.91	0.379076	1.000000	-
Rv0923c	-	16	191.9	174.1	187.7	172.7	197.5	161.2	0.083	-0.054	0.052	-0.064	0.124	-0.161	230.2	214.2	214.5	197.4	243.1	206.4	0.83	0.81	0.88	0.88	0.81	0.78	0.913843	1.000000	-
Rv0924c	mntH	17	70.4	69.1	74.0	101.2	117.9	106.2	-0.330	-0.356	-0.263	0.163	0.375	0.231	81.6	78.3	78.6	107.5	125.3	116.5	0.86	0.88	0.94	0.94	0.94	0.91	0.004117	0.067038	-
Rv0925c	-	15	150.6	134.5	150.4	143.5	158.2	165.0	0.003	-0.155	0.000	-0.065	0.071	0.130	165.3	139.2	167.1	153.7	158.2	183.3	0.91	0.97	0.90	0.93	1.00	0.90	0.608787	1.000000	-
Rv0926c	-	18	99.5	106.2	107.8	101.2	113.2	95.2	-0.059	0.031	0.052	-0.035	0.119	-0.120	109.6	112.5	121.3	109.3	119.9	103.8	0.91	0.94	0.89	0.93	0.94	0.92	0.992904	1.000000	-
Rv0927c	-	5	246.1	113.9	230.7	196.4	179.5	178.4	0.359	-0.720	0.267	0.040	-0.086	-0.094	246.1	142.3	230.7	196.4	179.5	198.2	1.00	0.80	1.00	1.00	1.00	0.90	0.260509	1.000000	-
Rv0928	pstS3	21	20.9	32.8	45.1	78.8	112.5	27.2	-1.160	-0.614	-0.209	0.534	1.022	-0.848	41.2	49.2	65.3	95.5	124.4	33.5	0.51	0.67	0.69	0.83	0.90	0.81	0.000000	0.000000	-
Rv0929	pstC2	16	23.4	29.6	31.9	62.3	114.7	17.9	-0.862	-0.579	-0.484	0.382	1.213	-1.170	35.1	36.4	46.4	71.2	126.5	25.0	0.67	0.81	0.69	0.88	0.91	0.72	0.000000	0.000000	-
Rv0930	pstA1	15	22.9	34.5	37.8	64.3	129.3	34.2	-1.076	-0.574	-0.460	0.237	1.191	-0.587	35.5	39.8	51.5	70.6	133.8	35.3	0.64	0.87	0.73	0.91	0.97	0.97	0.000000	0.000000	-
Rv0931c	pknD	40	156.3	164.1	152.1	158.7	160.5	153.8	-0.012	0.057	-0.049	0.010	0.025	-0.034	178.6	177.5	184.4	178.0	178.3	168.5	0.88	0.93	0.82	0.89	0.90	0.91	0.975805	1.000000	-
Rv0932c	pstS2	23	49.4	56.0	47.5	64.0	65.1	58.3	-0.183	-0.017	-0.234	0.162	0.184	0.036	79.2	80.5	87.3	100.4	90.7	78.8	0.62	0.70	0.54	0.64	0.72	0.74	0.844368	1.000000	-
Rv0933	pstB	12	94.3	96.9	94.9	92.6	85.1	113.2	-0.026	0.011	-0.019	-0.051	-0.168	0.225	109.6	110.8	108.4	101.1	107.4	129.4	0.86	0.88	0.88	0.92	0.79	0.88	0.892962	1.000000	-
Rv0934	pstS1	19	175.2	175.6	199.5	166.3	198.5	161.6	-0.034	-0.030	0.149	-0.107	0.142	-0.146	181.5	185.4	216.6	178.8	215.5	175.5	0.96	0.95	0.92	0.93	0.92	0.92	0.881160	1.000000	-
Rv0935	pstC1	12	180.5	149.2	172.0	185.3	166.9	143.3	0.116	-0.151	0.048	0.153	0.006	-0.207	196.9	162.8	187.6	190.6	182.1	163.8	0.92	0.92	0.92	0.97	0.92	0.88	0.977484	1.000000	-
Rv0936	pstA2	19	86.9	95.7	86.3	99.7	79.5	97.5	-0.062	0.070	-0.071	0.126	-0.183	0.095	88.4	121.2	102.5	105.2	91.5	100.1	0.98	0.79	0.84	0.95	0.87	0.97	0.015013	0.190169	-
Rv0937c	-	12	24.0	15.7	19.6	23.0	17.4	23.0	0.189	-0.296	-0.051	0.138	-0.186	0.139	34.6	22.2	31.3	33.1	24.5	26.3	0.69	0.71	0.62	0.69	0.71	0.88	0.424870	1.000000	-
Rv0938	-	38	85.2	62.5	72.8	66.2	68.9	69.0	0.252	-0.167	0.039	-0.090	-0.036	-0.033	123.0	98.9	117.8	87.7	95.2	100.9	0.69	0.63	0.62	0.75	0.72	0.68	0.400339	1.000000	-
Rv0939	-	26	52.0	47.7	51.1	56.3	60.6	54.7	-0.043	-0.156	-0.067	0.062	0.159	0.024	63.4	53.9	61.8	64.6	70.0	58.1	0.82	0.88	0.83	0.87	0.87	0.94	0.696246	1.000000	-
Rv0940c	-	13	43.4	41.7	55.9	61.0	43.2	47.0	-0.149	-0.201	0.181	0.298	-0.156	-0.047	65.1	54.2	80.7	76.7	62.4	55.5	0.67	0.77	0.69	0.79	0.69	0.85	0.769615	1.000000	-
Rv0941c	-	8	213.1	195.5	185.2	188.1	192.2	210.7	0.107	-0.014	-0.090	-0.069	-0.038	0.091	213.1	208.6	185.2	205.2	192.2	240.8	1.00	0.94	1.00	0.92	1.00	0.88	0.456512	1.000000	-
Rv0942	-	7	103.3	104.1	77.3	113.7	122.1	119.3	-0.043	-0.033	-0.440	0.088	0.187	0.155	103.3	112.1	90.1	113.7	122.1	128.5	1.00	0.93	0.86	1.00	1.00	0.93	0.339970	1.000000	-
Rv0943c	-	16	101.2	78.2	87.9	102.2	112.5	98.0	0.063	-0.289	-0.130	0.076	0.209	0.019	124.5	89.4	104.1	114.0	128.6	112.0	0.81	0.88	0.84	0.90	0.88	0.88	0.913678	1.000000	-
Rv0944	-	7	130.8	157.3	104.4	135.3	126.9	114.3	0.028	0.285	-0.284	0.075	-0.014	-0.158	152.6	183.5	132.8	157.8	126.9	133.4	0.86	0.86	0.79	0.86	1.00	0.86	0.765789	1.000000	-
Rv0945	-	7	45.4	70.8	69.6	67.0	83.4	79.7	-0.561	0.029	0.005	-0.045	0.250	0.189	59.6	90.1	88.5	100.5	116.7	111.6	0.76	0.79	0.79	0.67	0.71	0.71	0.491014	1.000000	-
Rv0946c	pgi	17	133.7	133.2	131.5	137.1	139.9	106.1	0.037	0.031	0.013	0.071	0.099	-0.284	166.4	156.2	154.2	139.9	153.4	124.4	0.80	0.85	0.85	0.98	0.91	0.85	0.367618	1.000000	-
Rv0948c	-	6	5.7	7.6	1.0	11.8	13.2	13.0	-0.364	-0.121	-1.182	0.287	0.410	0.394	34.0	45.7	12.6	70.5	79.4	78.2	0.17	0.17	0.08	0.17	0.17	0.17	0.108907	0.781545	-
Rv0949	uvrD1	44	47.4	65.6	55.4	76.3	83.5	56.6	-0.399	0.029	-0.195	0.234	0.356	-0.166	64.5	78.0	69.6	92.4	96.7	70.2	0.73	0.84	0.80	0.83	0.86	0.81	0.003650	0.061196	-
Rv0950c	-	18	86.1	115.1	78.2	115.3	121.0	110.3	-0.264	0.136	-0.394	0.138	0.205	0.076	119.2	159.4	100.6	132.5	140.5	147.0	0.72	0.72	0.78	0.87	0.86	0.75	0.146050	0.932386	-
Rv0951	sucC	14	0.3	0.0	0.0	0.4	0.8	0.4	-0.009	-0.086	-0.086	0.012	0.137	0.021	11.6	0.0	0.0	14.8	11.8	10.8	0.02	0.00	0.00	0.02	0.07	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0952	sucD	10	0.0	0.5	0.0	0.4	0.0	0.5	-0.067	0.076	-0.067	0.053	-0.067	0.063	0.0	10.4	0.0	13.0	0.0	9.4	0.00	0.05	0.00	0.03	0.00	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0953c	-	10	179.2	180.5	183.8	182.9	209.8	184.0	-0.057	-0.047	-0.022	-0.029	0.164	-0.020	185.4	200.6	204.2	195.9	233.1	193.7	0.97	0.90	0.90	0.93	0.90	0.95	0.938114	1.000000	-
Rv0954	-	25	163.5	186.0	164.6	172.0	180.3	151.3	-0.052	0.129	-0.042	0.019	0.086	-0.160	175.1	189.8	168.0	184.2	180.3	164.5	0.93	0.98	0.98	0.93	1.00	0.92	0.308019	1.000000	-
Rv0955	-	17	77.3	89.2	80.0	86.8	103.7	93.2	-0.183	0.013	-0.136	-0.025	0.220	0.073	98.5	94.8	104.6	110.6	125.9	102.3	0.78	0.94	0.76	0.78	0.82	0.91	0.557033	1.000000	-
Rv0956	purN	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0957	purH	20	0.0	0.0	0.3	0.0	0.0	0.2	-0.026	-0.026	0.062	-0.026	-0.026	0.040	0.0	0.0	12.6	0.0	0.0	9.4	0.00	0.00	0.03	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv0958	-	11	158.0	187.0	197.9	174.7	154.7	145.2	-0.099	0.137	0.217	0.041	-0.129	-0.217	193.1	228.6	229.2	221.7	189.1	168.1	0.82	0.82	0.86	0.79	0.82	0.86	0.981191	1.000000	-
Rv0959	-	14	99.5	119.7	127.3	89.3	135.6	103.5	-0.169	0.086	0.171	-0.317	0.259	-0.115	122.9	145.8	132.0	121.0	151.8	120.7	0.81	0.82	0.96	0.74	0.89	0.86	0.299600	1.000000	-
Rv0960	-	5	296.4	289.9	257.5	243.9	288.9	260.8	0.117	0.086	-0.082	-0.159	0.081	-0.064	296.4	362.4	321.8	304.9	361.1	260.8	1.00	0.80	0.80	0.80	0.80	1.00	0.484494	1.000000	-
Rv0961	-	7	92.6	87.4	100.1	91.4	86.6	118.6	-0.051	-0.130	0.056	-0.069	-0.142	0.290	108.0	111.2	116.8	106.6	93.3	151.0	0.86	0.79	0.86	0.86	0.93	0.79	0.720583	1.000000	-
Rv0962c	lprP	14	197.6	152.1	153.1	179.0	156.9	144.7	0.262	-0.105	-0.095	0.124	-0.061	-0.174	207.5	152.1	164.9	192.8	169.0	155.9	0.95	1.00	0.93	0.93	0.93	0.93	0.825503	1.000000	-
Rv0963c	-	10	145.5	141.4	152.7	159.8	158.3	137.1	-0.034	-0.074	0.033	0.097	0.083	-0.117	167.9	202.0	179.6	177.6	175.9	144.3	0.87	0.70	0.85	0.90	0.90	0.95	0.718192	1.000000	-
Rv0964c	-	5	179.9	180.7	188.0	226.2	180.3	194.3	-0.088	-0.082	-0.026	0.234	-0.085	0.020	179.9	225.8	208.9	242.3	200.4	215.9	1.00	0.80	0.90	0.93	0.90	0.90	0.809919	1.000000	-
Rv0965c	-	6	146.4	105.0	154.5	134.4	115.5	140.6	0.137	-0.325	0.212	0.017	-0.193	0.080	146.4	105.0	154.5	134.4	115.5	140.6	1.00	1.00	1.00	1.00	1.00	1.00	0.891496	1.000000	-
Rv0966c	-	9	286.6	227.8	247.3	263.4	262.0	223.4	0.183	-0.141	-0.025	0.064	0.057	-0.169	286.6	227.8	247.3	284.5	262.0	223.4	1.00	1.00	1.00	0.93	1.00	1.00	0.627343	1.000000	-
Rv0967	-	1	114.8	193.5	165.7	177.5	224.6	298.6	-0.745	-0.016	-0.234	-0.138	0.193	0.596	114.8	193.5	165.7	177.5	224.6	298.6	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0968	-	6	269.3	354.7	356.1	359.3	321.5	294.0	-0.270	0.121	0.126	0.139	-0.019	-0.146	303.0	425.6	356.1	359.3	321.5	294.0	0.89	0.83	1.00	1.00	1.00	1.00	0.546222	1.000000	-
Rv0969	ctpV	19	258.9	257.7	236.0	220.6	229.6	226.7	0.117	0.111	-0.013	-0.109	-0.052	-0.070	278.4	288.0	256.3	251.4	249.2	246.1	0.93	0.89	0.92	0.88	0.92	0.92	0.988976	1.000000	-
Rv0970	-	12	64.8	53.1	52.1	51.0	52.3	69.8	0.166	-0.099	-0.123	-0.150	-0.119	0.267	80.4	70.7	83.4	68.0	62.7	83.8	0.81	0.75	0.62	0.75	0.83	0.83	0.859529	1.000000	-
Rv0971c	echA7	5	161.1	160.1	214.0	185.0	187.6	157.0	-0.136	-0.144	0.263	0.059	0.078	-0.172	201.3	177.9	237.8	231.3	187.6	196.2	0.80	0.90	0.90	0.80	1.00	0.80	0.881289	1.000000	-
Rv0972c	fadE12	16	96.7	82.2	102.9	83.5	102.6	74.2	0.093	-0.130	0.179	-0.107	0.175	-0.268	113.2	97.4	126.7	97.8	126.3	84.8	0.85	0.84	0.81	0.85	0.81	0.88	0.794964	1.000000	-
Rv0973c	accA2	20	59.0	52.3	64.0	42.9	43.2	38.9	0.217	0.057	0.326	-0.201	-0.191	-0.327	84.3	74.7	94.9	67.7	57.6	64.8	0.70	0.70	0.68	0.63	0.75	0.60	0.661727	1.000000	-
Rv0974c	accD2	19	47.0	45.1	46.7	41.3	45.9	41.6	0.068	0.014	0.059	-0.098	0.037	-0.088	62.3	74.5	61.1	57.5	62.3	63.3	0.75	0.61	0.76	0.72	0.74	0.66	0.565463	1.000000	-
Rv0975c	fadE13	18	140.0	128.3	117.4	128.0	135.5	113.9	0.134	0.012	-0.111	0.009	0.088	-0.152	175.8	184.7	162.5	197.5	180.6	157.8	0.80	0.69	0.72	0.65	0.75	0.72	0.780640	1.000000	-
Rv0976c	-	16	170.5	163.5	190.0	173.9	167.1	182.7	-0.033	-0.092	0.118	-0.005	-0.061	0.063	181.9	168.8	209.6	194.2	191.0	201.6	0.94	0.97	0.91	0.90	0.88	0.91	0.922341	1.000000	-
Rv0977	PE_PGRS16	25	119.8	110.7	116.3	111.5	88.4	89.0	0.170	0.060	0.129	0.070	-0.249	-0.238	224.7	184.5	193.9	214.3	157.8	178.1	0.53	0.60	0.60	0.52	0.56	0.50	0.943304	1.000000	-
Rv0978c	PE_PGRS17	7	492.5	502.3	446.0	422.5	409.5	382.9	0.152	0.181	0.011	-0.066	-0.111	-0.207	492.5	502.3	446.0	522.0	409.5	382.9	1.00	1.00	1.00	0.81	1.00	1.00	0.178843	1.000000	-
Rv0979c	-	1	35.6	0.0	6.3	141.4	42.5	0.0	-0.071	-3.092	-1.915	1.780	0.155	-3.092	35.6	0.0	12.6	141.4	42.5	0.0	1.00	0.00	0.50	1.00	1.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0979A	rpmF	1	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0980c	PE_PGRS18	14	304.9	293.8	314.1	310.1	252.3	233.7	0.097	0.044	0.139	0.121	-0.172	-0.280	328.3	329.1	351.8	383.1	271.7	251.6	0.93	0.89	0.89	0.81	0.93	0.93	0.789038	1.000000	-
Rv0981	mprA	9	344.8	383.3	365.7	340.1	331.1	355.6	-0.035	0.116	0.048	-0.055	-0.093	0.009	358.1	405.9	365.7	382.6	331.1	400.0	0.96	0.94	1.00	0.89	1.00	0.89	0.590257	1.000000	-
Rv0982	mprB	20	0.0	2.5	0.0	4.0	4.4	2.1	-0.520	0.070	-0.520	0.330	0.394	-0.022	0.0	20.2	0.0	26.7	29.5	13.7	0.00	0.12	0.00	0.15	0.15	0.15	0.000657	0.013730	-
Rv0983	pepD	13	48.5	55.6	35.4	44.5	39.6	60.0	0.034	0.213	-0.370	-0.077	-0.230	0.314	67.5	65.7	51.2	51.1	46.8	65.0	0.72	0.85	0.69	0.87	0.85	0.92	0.457524	1.000000	-
Rv0984	moaB2	5	168.8	142.4	135.6	117.2	141.2	161.6	0.218	-0.020	-0.089	-0.291	-0.032	0.157	168.8	203.4	169.5	159.8	141.2	202.0	1.00	0.70	0.80	0.73	1.00	0.80	0.241085	1.000000	-
Rv0985c	mscL	9	79.6	86.8	59.6	65.2	68.2	114.9	0.009	0.127	-0.380	-0.259	-0.200	0.513	97.7	111.5	89.4	92.7	76.7	137.9	0.81	0.78	0.67	0.70	0.89	0.83	0.431743	1.000000	-
Rv0986	-	21	18.6	17.0	21.2	20.7	17.5	24.2	-0.072	-0.179	0.075	0.046	-0.147	0.234	28.7	32.4	38.7	37.2	31.9	35.1	0.65	0.52	0.55	0.56	0.55	0.69	0.298511	1.000000	-
Rv0987	-	85	22.1	19.3	26.9	24.8	23.9	29.5	-0.119	-0.276	0.120	0.018	-0.026	0.229	47.3	36.0	58.7	45.4	40.2	49.1	0.47	0.54	0.46	0.55	0.59	0.60	0.015143	0.190870	-
Rv0988	-	37	12.0	19.6	17.1	18.0	17.8	18.8	-0.388	0.149	-0.007	0.049	0.038	0.099	33.3	37.3	43.7	39.9	35.6	29.6	0.36	0.53	0.39	0.45	0.50	0.64	0.110951	0.784724	-
Rv0989c	grcC2	17	171.8	165.0	170.1	163.4	160.1	192.1	0.012	-0.045	-0.003	-0.059	-0.087	0.168	186.5	180.9	192.7	170.1	170.1	192.1	0.92	0.91	0.88	0.96	0.94	1.00	0.752794	1.000000	-
Rv0990c	-	8	108.3	92.4	88.6	145.7	94.6	118.6	0.004	-0.215	-0.273	0.415	-0.182	0.129	173.3	123.2	141.7	184.0	151.4	146.0	0.62	0.75	0.62	0.79	0.62	0.81	0.927108	1.000000	-
Rv0991c	-	1	230.9	148.7	131.3	141.8	150.8	139.7	0.541	-0.078	-0.251	-0.144	-0.058	-0.165	230.9	148.7	131.3	141.8	150.8	139.7	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv0992c	-	6	496.4	492.5	510.2	413.7	470.9	390.6	0.101	0.090	0.141	-0.159	0.026	-0.241	496.4	492.5	510.2	496.4	513.7	390.6	1.00	1.00	1.00	0.83	0.92	1.00	0.440773	1.000000	-
Rv0993	galU	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv0994	moeA1	11	271.7	203.0	270.1	174.2	214.7	188.3	0.296	-0.116	0.288	-0.331	-0.037	-0.221	280.2	203.0	297.1	185.4	214.7	188.3	0.97	1.00	0.91	0.94	1.00	1.00	0.285289	1.000000	-
Rv0995	rimJ	5	109.4	79.4	90.6	66.1	110.6	107.2	0.211	-0.229	-0.049	-0.475	0.226	0.182	109.4	88.2	129.4	76.3	110.6	107.2	1.00	0.90	0.70	0.87	1.00	1.00	0.238677	1.000000	-
Rv0996	-	14	262.9	247.8	219.9	250.8	269.4	221.8	0.097	0.014	-0.155	0.031	0.132	-0.143	262.9	247.8	228.1	250.8	269.4	221.8	1.00	1.00	0.96	1.00	1.00	1.00	0.890974	1.000000	-
Rv0997	-	4	92.0	83.1	135.8	82.5	176.8	113.1	-0.294	-0.433	0.244	-0.442	0.613	-0.009	122.6	110.7	135.8	110.0	235.7	150.8	0.75	0.75	1.00	0.75	0.75	0.75	0.195958	1.000000	-
Rv0998	-	11	76.7	76.8	74.4	76.5	83.9	88.4	-0.048	-0.045	-0.089	-0.052	0.074	0.145	101.2	112.7	86.1	93.5	102.6	102.3	0.76	0.68	0.86	0.82	0.82	0.86	0.829094	1.000000	-
Rv0999	-	10	275.9	304.1	245.0	257.7	295.7	283.8	-0.006	0.132	-0.174	-0.103	0.092	0.034	275.9	304.1	257.9	257.7	295.7	283.8	1.00	1.00	0.95	1.00	1.00	1.00	0.890187	1.000000	-
Rv1000c	-	7	511.8	428.6	456.0	472.0	412.5	436.7	0.174	-0.079	0.010	0.059	-0.133	-0.052	511.8	428.6	456.0	472.0	412.5	436.7	1.00	1.00	1.00	1.00	1.00	1.00	0.966096	1.000000	-
Rv1001	arcA	18	264.7	277.5	287.3	285.1	272.4	261.1	-0.053	0.015	0.064	0.053	-0.012	-0.072	269.7	277.5	323.2	290.5	306.5	268.6	0.98	1.00	0.89	0.98	0.89	0.97	0.268535	1.000000	-
Rv1002c	-	21	19.8	25.9	15.9	15.4	14.8	17.2	0.101	0.414	-0.149	-0.184	-0.227	-0.060	35.7	35.0	29.0	29.4	28.2	21.9	0.56	0.74	0.55	0.52	0.52	0.79	0.021972	0.255594	-
Rv1003	-	8	79.3	116.0	109.6	94.7	96.8	132.6	-0.382	0.140	0.061	-0.140	-0.109	0.325	90.7	132.6	125.3	98.8	110.7	151.6	0.88	0.88	0.88	0.96	0.88	0.88	0.016139	0.201000	-
Rv1004c	-	9	89.8	90.4	89.5	116.0	93.5	75.8	-0.041	-0.032	-0.045	0.312	0.015	-0.271	115.4	101.7	94.8	120.5	105.2	97.5	0.78	0.89	0.94	0.96	0.89	0.78	0.523525	1.000000	-
Rv1005c	pabB	21	16.0	29.7	21.9	23.1	19.1	18.5	-0.330	0.394	0.029	0.090	-0.129	-0.166	335.7	623.1	460.5	484.9	267.7	259.1	0.05	0.05	0.05	0.05	0.07	0.07	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1006	-	37	181.8	232.4	158.5	243.0	248.6	196.9	-0.204	0.141	-0.396	0.205	0.237	-0.092	195.9	242.2	175.1	249.8	259.1	211.1	0.93	0.96	0.91	0.97	0.96	0.93	0.004158	0.067168	-
Rv1007c	metG	23	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1008	tatD	11	287.1	294.0	295.5	310.1	300.9	272.3	-0.030	0.003	0.010	0.079	0.036	-0.105	296.1	294.0	325.0	319.8	300.9	272.3	0.97	1.00	0.91	0.97	1.00	1.00	0.861001	1.000000	-
Rv1009	rpfB	9	100.7	97.0	84.1	113.9	124.7	97.8	-0.032	-0.083	-0.278	0.138	0.264	-0.071	143.0	134.3	116.5	139.8	172.7	117.4	0.70	0.72	0.72	0.81	0.72	0.83	0.967809	1.000000	-
Rv1010	ksgA	12	73.4	80.9	63.6	92.8	119.2	63.8	-0.155	-0.024	-0.347	0.165	0.509	-0.343	85.2	84.4	72.7	95.5	119.2	69.6	0.86	0.96	0.88	0.97	1.00	0.92	0.086906	0.688009	-
Rv1011	ispE	12	0.0	0.0	0.0	0.0	0.0	0.5	-0.021	-0.021	-0.021	-0.021	-0.021	0.103	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1012	-	6	116.5	123.5	119.6	105.2	120.6	88.6	0.051	0.131	0.086	-0.091	0.098	-0.326	139.9	148.2	143.5	126.2	144.7	106.3	0.83	0.83	0.83	0.83	0.83	0.83	0.997639	1.000000	-
Rv1013	pks16	21	62.8	120.9	61.1	69.7	83.2	94.4	-0.360	0.533	-0.396	-0.220	0.019	0.191	72.0	120.9	67.6	70.8	83.2	94.4	0.87	1.00	0.90	0.98	1.00	1.00	0.000006	0.000186	-
Rv1014c	pth	11	0.0	0.5	0.0	0.0	0.0	0.0	-0.022	0.104	-0.022	-0.022	-0.022	-0.022	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.05	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1015c	rplY	9	16.7	29.4	20.8	54.2	47.3	27.7	-0.796	-0.132	-0.545	0.652	0.473	-0.206	32.2	40.7	46.9	63.7	53.2	49.8	0.52	0.72	0.44	0.85	0.89	0.56	0.011593	0.155216	-
Rv1016c	lpqT	6	70.2	95.9	64.8	112.2	99.6	96.3	-0.335	0.090	-0.442	0.306	0.141	0.095	126.3	191.9	111.1	202.0	132.8	165.1	0.56	0.50	0.58	0.56	0.75	0.58	0.875102	1.000000	-
Rv1017c	prsA	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1018c	glmU	23	0.2	0.0	0.0	0.0	0.0	0.2	0.028	-0.019	-0.019	-0.019	-0.019	0.047	11.6	0.0	0.0	0.0	0.0	10.8	0.01	0.00	0.00	0.00	0.00	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1019	-	7	283.9	344.5	348.1	390.0	348.3	319.2	-0.252	0.023	0.038	0.199	0.039	-0.085	283.9	344.5	348.1	390.0	348.3	319.2	1.00	1.00	1.00	1.00	1.00	1.00	0.758390	1.000000	-
Rv1020	mfd	33	274.6	268.3	260.9	287.5	267.5	236.5	0.045	0.013	-0.027	0.111	0.009	-0.166	295.4	295.2	287.0	312.8	294.3	264.5	0.93	0.91	0.91	0.92	0.91	0.89	0.986628	1.000000	-
Rv1021	-	12	119.1	116.2	128.1	125.5	96.2	125.7	0.008	-0.027	0.108	0.080	-0.286	0.081	178.7	132.8	161.8	173.8	135.9	158.7	0.67	0.88	0.79	0.72	0.71	0.79	0.902200	1.000000	-
Rv1022	lpqU	13	76.7	77.1	73.9	83.3	77.5	81.2	-0.028	-0.021	-0.078	0.085	-0.014	0.050	106.8	95.4	91.5	104.8	84.0	105.6	0.72	0.81	0.81	0.79	0.92	0.77	0.890025	1.000000	-
Rv1023	eno	13	0.3	0.0	0.0	0.0	0.0	0.0	0.069	-0.014	-0.014	-0.014	-0.014	-0.014	11.6	0.0	0.0	0.0	0.0	0.0	0.03	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1024	-	8	9.4	3.8	3.9	7.1	10.4	1.8	0.383	-0.335	-0.318	0.135	0.476	-0.709	75.3	30.1	61.9	57.1	55.3	28.2	0.12	0.12	0.06	0.12	0.19	0.06	0.860426	1.000000	-
Rv1025	-	6	4.8	2.6	14.5	5.6	7.4	5.0	-0.254	-0.612	0.747	-0.136	0.088	-0.225	28.5	31.3	87.1	25.1	44.2	29.7	0.17	0.08	0.17	0.22	0.17	0.17	0.204271	1.000000	-
Rv1026	-	6	75.7	95.9	42.7	58.3	67.3	49.0	0.209	0.531	-0.548	-0.142	0.050	-0.371	80.1	95.9	73.2	74.9	80.7	53.4	0.94	1.00	0.58	0.78	0.83	0.92	0.099366	0.741066	-
Rv1027c	kdpE	10	72.4	69.8	89.8	54.2	50.4	65.2	0.104	0.056	0.397	-0.281	-0.377	-0.035	127.7	99.8	149.7	95.7	84.1	100.4	0.57	0.70	0.60	0.57	0.60	0.65	0.957282	1.000000	-
Rv1028c	kdpD	21	129.9	117.9	118.7	103.9	85.8	120.8	0.195	0.061	0.070	-0.114	-0.376	0.095	154.4	133.8	131.2	119.0	97.4	133.5	0.84	0.88	0.90	0.87	0.88	0.90	0.888932	1.000000	-
Rv1028A	kdpF	3	97.4	27.4	62.3	67.4	44.2	60.1	0.660	-0.998	0.055	0.160	-0.397	0.006	125.2	32.9	186.9	75.8	44.2	120.1	0.78	0.83	0.33	0.89	1.00	0.50	0.025453	0.284475	-
Rv1029	kdpA	25	131.0	115.5	129.3	110.6	119.4	133.5	0.085	-0.090	0.067	-0.150	-0.044	0.112	148.9	131.2	150.4	116.8	132.6	159.0	0.88	0.88	0.86	0.95	0.90	0.84	0.544129	1.000000	-
Rv1030	kdpB	12	137.3	180.4	185.2	172.5	152.4	175.9	-0.276	0.106	0.143	0.043	-0.130	0.070	149.8	188.2	211.6	182.6	182.9	201.0	0.92	0.96	0.88	0.94	0.83	0.88	0.705619	1.000000	-
Rv1031	kdpC	9	114.8	116.6	138.6	130.2	142.2	109.8	-0.122	-0.100	0.140	0.053	0.175	-0.184	119.2	149.9	146.7	130.2	142.2	123.5	0.96	0.78	0.94	1.00	1.00	0.89	0.135750	0.899736	-
Rv1032c	trcS	23	145.2	110.0	121.1	133.4	125.9	133.5	0.174	-0.211	-0.079	0.056	-0.025	0.056	172.7	120.5	135.8	167.4	137.9	139.5	0.84	0.91	0.89	0.80	0.91	0.96	0.241086	1.000000	-
Rv1033c	trcR	12	173.0	218.9	215.4	208.8	207.9	223.1	-0.258	0.073	0.050	0.007	0.000	0.100	194.6	218.9	246.2	227.8	217.0	223.1	0.89	1.00	0.88	0.92	0.96	1.00	0.567316	1.000000	-
Rv1034c	-	2	90.2	121.8	95.5	127.4	68.7	108.0	-0.167	0.246	-0.090	0.308	-0.537	0.080	90.2	121.8	95.5	127.4	68.7	108.0	1.00	1.00	1.00	1.00	1.00	1.00	0.792806	1.000000	-
Rv1035c	-	4	161.7	144.5	84.4	109.0	115.7	98.3	0.428	0.271	-0.470	-0.121	-0.038	-0.263	161.7	144.5	96.5	109.0	115.7	112.3	1.00	1.00	0.88	1.00	1.00	0.88	0.631466	1.000000	-
Rv1036c	-	5	150.7	194.5	196.1	187.9	165.5	196.3	-0.263	0.094	0.106	0.046	-0.132	0.108	188.4	194.5	245.2	234.9	206.8	218.1	0.80	1.00	0.80	0.80	0.80	0.90	0.882921	1.000000	-
Rv1037c	esxI	3	318.7	359.8	325.2	293.0	383.6	411.8	-0.128	0.045	-0.099	-0.247	0.136	0.237	318.7	359.8	325.2	293.0	383.6	411.8	1.00	1.00	1.00	1.00	1.00	1.00	0.630733	1.000000	-
Rv1038c	esxJ	3	258.5	251.9	283.7	194.0	255.6	253.1	0.050	0.014	0.182	-0.355	0.034	0.020	258.5	251.9	283.7	194.0	255.6	253.1	1.00	1.00	1.00	1.00	1.00	1.00	0.548668	1.000000	-
Rv1039c	PPE15	20	144.2	163.1	134.7	139.0	148.4	167.5	-0.050	0.122	-0.145	-0.102	-0.011	0.159	173.1	171.7	145.6	146.3	156.2	176.3	0.83	0.95	0.93	0.95	0.95	0.95	0.572113	1.000000	-
Rv1040c	PE8	7	185.9	228.6	229.6	213.6	199.5	197.7	-0.166	0.126	0.132	0.029	-0.067	-0.079	185.9	228.6	229.6	213.6	199.5	197.7	1.00	1.00	1.00	1.00	1.00	1.00	0.947584	1.000000	-
Rv1041c	-	16	291.5	277.4	260.5	291.0	246.2	255.6	0.107	0.036	-0.053	0.104	-0.132	-0.079	304.2	277.4	260.5	291.0	246.2	255.6	0.96	1.00	1.00	1.00	1.00	1.00	0.804332	1.000000	-
Rv1042c	-	5	91.0	81.4	107.6	91.4	84.9	90.8	-0.003	-0.154	0.228	0.003	-0.098	-0.005	105.0	81.4	107.6	91.4	84.9	90.8	0.87	1.00	1.00	1.00	1.00	1.00	0.788653	1.000000	-
Rv1043c	-	14	72.4	79.6	89.1	80.4	85.8	92.1	-0.189	-0.061	0.093	-0.047	0.041	0.138	98.1	101.3	113.5	99.4	100.1	117.2	0.74	0.79	0.79	0.81	0.86	0.79	0.978641	1.000000	-
Rv1044	-	9	15.4	20.9	10.4	12.4	16.2	19.4	-0.026	0.317	-0.430	-0.260	0.029	0.231	139.0	188.3	94.0	111.4	146.2	174.8	0.11	0.11	0.11	0.11	0.11	0.11	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1045	-	10	210.1	191.6	212.5	235.2	233.9	242.1	-0.070	-0.201	-0.055	0.088	0.081	0.129	225.2	212.9	236.1	261.3	259.9	242.1	0.93	0.90	0.90	0.90	0.90	1.00	0.910218	1.000000	-
Rv1046c	-	4	224.2	298.5	292.6	288.5	277.5	254.8	-0.276	0.128	0.100	0.080	0.025	-0.096	224.2	298.5	292.6	288.5	277.5	254.8	1.00	1.00	1.00	1.00	1.00	1.00	0.854777	1.000000	-
Rv1047	-	15	236.2	246.3	268.3	250.9	253.8	236.0	-0.072	-0.013	0.108	0.013	0.029	-0.073	247.2	273.6	277.5	250.9	253.8	236.0	0.96	0.90	0.97	1.00	1.00	1.00	0.437758	1.000000	-
Rv1048c	-	21	158.9	184.1	157.7	175.8	171.7	177.1	-0.102	0.104	-0.112	0.039	0.007	0.050	185.4	220.9	184.0	205.0	189.8	218.8	0.86	0.83	0.86	0.86	0.90	0.81	0.741851	1.000000	-
Rv1049	-	4	250.8	259.3	263.8	294.6	288.4	243.6	-0.087	-0.040	-0.016	0.141	0.110	-0.128	250.8	259.3	263.8	294.6	288.4	243.6	1.00	1.00	1.00	1.00	1.00	1.00	0.981946	1.000000	-
Rv1050	-	10	53.3	89.0	84.4	71.2	66.6	74.8	-0.423	0.265	0.192	-0.037	-0.128	0.029	72.7	98.9	99.2	97.1	74.0	74.8	0.73	0.90	0.85	0.73	0.90	1.00	0.115765	0.799142	-
Rv1051c	-	8	60.8	69.7	70.8	64.8	70.7	71.1	-0.149	0.034	0.054	-0.064	0.053	0.060	91.2	101.4	94.3	86.4	94.3	103.4	0.67	0.69	0.75	0.75	0.75	0.69	0.998500	1.000000	-
Rv1052	-	4	55.6	84.3	102.9	79.3	101.0	102.1	-0.612	-0.051	0.222	-0.135	0.196	0.211	66.7	112.4	102.9	79.3	101.0	102.1	0.83	0.75	1.00	1.00	1.00	1.00	0.288926	1.000000	-
Rv1053c	-	6	40.0	59.3	59.4	57.6	61.7	70.8	-0.487	0.026	0.028	-0.012	0.079	0.264	51.5	64.7	79.1	69.1	61.7	77.2	0.78	0.92	0.75	0.83	1.00	0.92	0.652139	1.000000	-
Rv1054	-	5	93.9	141.5	149.1	132.7	141.9	149.9	-0.500	0.067	0.140	-0.022	0.071	0.148	100.6	141.5	149.1	132.7	141.9	149.9	0.93	1.00	1.00	1.00	1.00	1.00	0.888737	1.000000	-
Rv1055	-	3	22.9	35.6	72.8	91.6	84.2	56.3	-1.231	-0.692	0.247	0.559	0.444	-0.097	25.8	35.6	72.8	91.6	84.2	67.6	0.89	1.00	1.00	1.00	1.00	0.83	0.002397	0.043077	-
Rv1056	-	20	217.3	222.7	218.2	231.9	203.1	206.0	0.005	0.040	0.011	0.097	-0.090	-0.070	250.7	228.4	229.7	235.8	203.1	211.3	0.87	0.97	0.95	0.98	1.00	0.97	0.291786	1.000000	-
Rv1057	-	16	217.2	222.2	233.4	230.1	224.6	216.0	-0.043	-0.011	0.058	0.038	0.004	-0.051	231.7	237.1	240.9	230.1	231.8	216.0	0.94	0.94	0.97	1.00	0.97	1.00	0.729741	1.000000	-
Rv1058	fadD14	26	108.2	97.7	92.6	83.2	81.6	103.8	0.186	0.046	-0.029	-0.175	-0.200	0.129	140.7	145.2	123.4	122.4	121.3	138.4	0.77	0.67	0.75	0.68	0.67	0.75	0.742306	1.000000	-
Rv1059	-	9	87.1	64.4	58.7	64.2	53.0	71.8	0.365	-0.044	-0.168	-0.047	-0.303	0.102	106.9	77.3	70.4	72.3	53.0	80.8	0.81	0.83	0.83	0.89	1.00	0.89	0.257813	1.000000	-
Rv1060	-	5	121.2	127.6	110.7	150.4	131.8	122.1	-0.068	0.003	-0.193	0.232	0.048	-0.058	121.2	141.8	110.7	161.1	164.7	152.6	1.00	0.90	1.00	0.93	0.80	0.80	0.163230	0.994335	-
Rv1061	-	13	176.7	148.2	191.7	162.5	172.3	191.0	0.024	-0.222	0.138	-0.094	-0.011	0.133	196.9	192.7	262.3	192.1	186.7	236.4	0.90	0.77	0.73	0.85	0.92	0.81	0.672851	1.000000	-
Rv1062	-	4	148.7	164.2	174.2	169.6	170.0	206.0	-0.205	-0.066	0.017	-0.021	-0.017	0.253	148.7	164.2	199.1	169.6	170.0	206.0	1.00	1.00	0.88	1.00	1.00	1.00	0.805260	1.000000	-
Rv1063c	-	15	254.9	235.0	256.2	219.8	205.4	196.9	0.157	0.042	0.165	-0.052	-0.148	-0.207	273.1	251.7	274.5	274.7	236.9	227.2	0.93	0.93	0.93	0.80	0.87	0.87	0.657051	1.000000	-
Rv1064c	lpqV	5	106.6	125.9	143.6	117.7	126.5	162.1	-0.279	-0.049	0.134	-0.142	-0.042	0.303	106.6	125.9	143.6	117.7	158.1	162.1	1.00	1.00	1.00	1.00	0.80	1.00	0.088243	0.694601	-
Rv1065	-	9	393.8	434.0	423.1	364.9	365.6	321.3	0.037	0.175	0.139	-0.072	-0.069	-0.253	393.8	434.0	423.1	364.9	365.6	321.3	1.00	1.00	1.00	1.00	1.00	1.00	0.884092	1.000000	-
Rv1066	-	4	134.1	148.7	208.7	148.4	124.7	138.9	-0.162	-0.017	0.458	-0.020	-0.263	-0.113	178.8	148.7	208.7	161.9	166.3	138.9	0.75	1.00	1.00	0.92	0.75	1.00	0.527485	1.000000	-
Rv1067c	PE_PGRS19	14	316.5	298.1	303.0	287.5	260.0	283.2	0.117	0.032	0.055	-0.019	-0.161	-0.040	391.0	347.8	326.3	377.3	316.6	330.5	0.81	0.86	0.93	0.76	0.82	0.86	0.834434	1.000000	-
Rv1068c	PE_PGRS20	11	220.4	212.8	167.4	197.1	186.7	185.2	0.173	0.123	-0.214	0.016	-0.061	-0.072	330.6	334.4	230.2	260.2	256.7	271.7	0.67	0.64	0.73	0.76	0.73	0.68	0.944687	1.000000	-
Rv1069c	-	19	292.1	297.6	315.2	341.5	330.6	298.1	-0.096	-0.069	0.012	0.126	0.080	-0.067	333.0	332.7	332.7	341.5	330.6	314.6	0.88	0.89	0.95	1.00	1.00	0.95	0.136941	0.903132	-
Rv1070c	echA8	7	188.8	165.6	165.2	192.6	164.6	123.9	0.174	-0.010	-0.014	0.202	-0.018	-0.415	188.8	193.2	177.9	224.7	164.6	144.5	1.00	0.86	0.93	0.86	1.00	0.86	0.310681	1.000000	-
Rv1071c	echA9	11	415.3	469.6	467.6	474.3	439.4	343.0	-0.066	0.110	0.104	0.124	0.015	-0.338	415.3	469.6	467.6	474.3	483.4	377.3	1.00	1.00	1.00	1.00	0.91	0.91	0.092456	0.708520	-
Rv1072	-	12	47.7	80.5	60.2	95.0	146.5	76.8	-0.764	-0.064	-0.457	0.160	0.760	-0.129	57.2	80.5	65.6	100.5	152.9	87.7	0.83	1.00	0.92	0.94	0.96	0.88	0.000006	0.000196	-
Rv1073	-	19	218.0	247.7	264.9	259.0	230.7	260.1	-0.175	0.006	0.101	0.068	-0.095	0.074	234.4	261.5	272.1	273.3	230.7	274.5	0.93	0.95	0.97	0.95	1.00	0.95	0.655262	1.000000	-
Rv1074c	fadA3	11	232.8	236.0	243.8	169.4	183.2	223.8	0.113	0.132	0.179	-0.334	-0.224	0.058	247.8	236.0	255.5	174.7	183.2	223.8	0.94	1.00	0.95	0.97	1.00	1.00	0.799970	1.000000	-
Rv1075c	-	18	222.2	218.7	226.1	230.6	217.3	198.5	0.021	-0.001	0.046	0.074	-0.011	-0.138	249.9	231.6	232.6	230.6	230.0	216.6	0.89	0.94	0.97	1.00	0.94	0.92	0.461716	1.000000	-
Rv1076	lipU	17	81.8	87.6	91.5	79.3	84.6	94.2	-0.077	0.017	0.077	-0.118	-0.031	0.117	134.5	129.5	172.9	119.0	125.0	139.3	0.61	0.68	0.53	0.67	0.68	0.68	0.985748	1.000000	-
Rv1077	cbs	22	182.5	164.1	178.2	173.2	160.3	182.1	0.072	-0.077	0.038	-0.001	-0.110	0.069	194.3	180.5	186.7	181.5	167.9	182.1	0.94	0.91	0.95	0.95	0.95	1.00	0.839384	1.000000	-
Rv1078	pra	17	16.0	26.4	10.5	15.1	27.3	28.6	-0.287	0.291	-0.727	-0.354	0.335	0.388	35.5	37.4	23.8	26.5	51.6	44.1	0.45	0.71	0.44	0.57	0.53	0.65	0.010657	0.145120	-
Rv1079	metB	17	118.3	111.5	114.4	113.9	108.0	108.5	0.070	-0.011	0.024	0.018	-0.056	-0.049	154.7	118.5	129.7	129.1	122.4	136.6	0.76	0.94	0.88	0.88	0.88	0.79	0.599460	1.000000	-
Rv1080c	greA	6	8.2	17.8	4.2	13.5	23.2	12.7	-0.467	0.318	-0.989	0.018	0.626	-0.044	24.6	26.6	16.8	24.3	34.8	19.1	0.33	0.67	0.25	0.56	0.67	0.67	0.166778	0.996892	-
Rv1081c	-	6	32.0	55.2	22.4	37.2	36.4	47.3	-0.231	0.472	-0.665	-0.041	-0.070	0.270	48.0	55.2	29.8	47.8	43.6	51.6	0.67	1.00	0.75	0.78	0.83	0.92	0.266586	1.000000	-
Rv1082	mca	13	134.8	140.3	138.6	128.1	157.5	159.6	-0.084	-0.028	-0.045	-0.154	0.134	0.152	154.6	165.9	163.8	142.8	163.8	188.6	0.87	0.85	0.85	0.90	0.96	0.85	0.922146	1.000000	-
Rv1083	-	3	34.8	32.2	30.4	34.2	46.4	48.1	-0.101	-0.197	-0.269	-0.124	0.267	0.316	34.8	38.7	45.6	34.2	46.4	48.1	1.00	0.83	0.67	1.00	1.00	1.00	0.200319	1.000000	-
Rv1084	-	19	149.0	132.7	142.5	133.0	130.5	129.0	0.126	-0.036	0.063	-0.032	-0.058	-0.074	166.5	168.0	154.7	161.4	150.3	136.2	0.89	0.79	0.92	0.82	0.87	0.95	0.577209	1.000000	-
Rv1085c	-	10	17.1	15.7	5.3	1.0	2.1	6.2	0.778	0.682	-0.321	-1.108	-0.867	-0.204	27.0	22.4	21.3	14.8	13.8	12.4	0.63	0.70	0.25	0.07	0.15	0.50	0.000000	0.000001	-
Rv1086	-	12	2.5	4.2	9.4	22.8	65.2	1.7	-1.590	-1.295	-0.652	0.299	1.632	-1.760	13.0	16.9	28.2	32.9	78.2	10.1	0.19	0.25	0.33	0.69	0.83	0.17	0.000000	0.000000	-
Rv1087	PE_PGRS21	19	380.6	364.9	325.6	363.0	339.0	346.5	0.106	0.046	-0.116	0.039	-0.059	-0.028	409.3	364.9	325.6	363.0	348.2	346.5	0.93	1.00	1.00	1.00	0.97	1.00	0.283170	1.000000	-
Rv1087A	-	6	171.3	161.5	198.1	183.5	170.3	187.0	-0.059	-0.141	0.146	0.038	-0.067	0.065	171.3	161.5	198.1	183.5	170.3	187.0	1.00	1.00	1.00	1.00	1.00	1.00	0.985350	1.000000	-
Rv1088	PE9	4	29.6	49.6	59.3	84.2	53.0	61.0	-0.821	-0.164	0.074	0.545	-0.075	0.111	50.7	49.6	95.0	126.2	60.6	81.3	0.58	1.00	0.62	0.67	0.88	0.75	0.186826	1.000000	-
Rv1089	PE10	5	56.7	93.8	83.7	114.8	108.7	142.1	-0.767	-0.088	-0.242	0.191	0.115	0.487	85.0	93.8	83.7	132.5	108.7	142.1	0.67	1.00	1.00	0.87	1.00	1.00	0.043790	0.436802	-
Rv1089A	celA2a	1	126.8	92.0	81.4	80.3	124.6	97.3	0.322	-0.119	-0.286	-0.305	0.298	-0.043	126.8	92.0	81.4	80.3	124.6	97.3	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1090	celA2b	6	142.5	134.0	139.7	110.7	122.9	104.8	0.174	0.088	0.146	-0.177	-0.032	-0.253	160.4	134.0	209.6	132.8	122.9	104.8	0.89	1.00	0.67	0.83	1.00	1.00	0.259337	1.000000	-
Rv1091	PE_PGRS22	26	192.0	195.3	212.7	192.6	191.8	185.6	-0.022	0.002	0.123	-0.018	-0.024	-0.069	208.0	225.7	245.8	220.9	216.8	197.0	0.92	0.87	0.87	0.87	0.88	0.94	0.888865	1.000000	-
Rv1092c	coaA	16	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1093	glyA	12	3.0	5.1	7.3	0.8	2.9	4.7	-0.163	0.164	0.455	-0.625	-0.178	0.114	18.1	15.2	25.1	14.8	17.6	14.2	0.17	0.33	0.29	0.06	0.17	0.33	0.028407	0.313104	-
Rv1094	desA2	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1095	phoH2	11	89.9	87.5	98.1	95.6	82.8	89.4	-0.009	-0.047	0.110	0.075	-0.123	-0.018	109.9	91.7	119.9	105.2	101.2	109.2	0.82	0.95	0.82	0.91	0.82	0.82	0.819332	1.000000	-
Rv1096	-	16	61.9	60.6	63.3	56.6	57.4	56.6	0.056	0.027	0.084	-0.065	-0.045	-0.064	78.2	77.6	81.0	82.3	73.5	75.5	0.79	0.78	0.78	0.69	0.78	0.75	0.986812	1.000000	-
Rv1097c	-	14	9.0	9.8	10.7	9.4	11.0	15.7	-0.183	-0.108	-0.021	-0.147	0.008	0.375	27.1	30.4	27.2	35.8	30.8	39.9	0.33	0.32	0.39	0.26	0.36	0.39	0.706019	1.000000	-
Rv1098c	fumC	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1099c	glpX	11	134.6	141.9	157.8	143.2	167.4	134.2	-0.118	-0.045	0.104	-0.032	0.187	-0.123	164.5	148.7	192.9	175.1	193.9	155.3	0.82	0.95	0.82	0.82	0.86	0.86	0.893509	1.000000	-
Rv1100	-	9	35.7	54.4	45.3	48.2	27.8	51.1	-0.260	0.285	0.046	0.126	-0.573	0.203	56.7	65.2	81.6	68.5	35.7	65.7	0.63	0.83	0.56	0.70	0.78	0.78	0.332738	1.000000	-
Rv1101c	-	18	206.7	233.9	193.2	221.5	216.5	234.4	-0.073	0.101	-0.168	0.024	-0.008	0.104	218.9	233.9	210.8	225.7	222.6	248.2	0.94	1.00	0.92	0.98	0.97	0.94	0.743688	1.000000	-
Rv1102c	-	7	48.8	34.9	35.8	45.4	69.1	59.8	-0.006	-0.437	-0.403	-0.098	0.458	0.265	78.8	48.8	62.7	73.4	69.1	69.8	0.62	0.71	0.57	0.62	1.00	0.86	0.257963	1.000000	-
Rv1103c	-	6	74.8	76.5	78.1	107.9	82.7	114.6	-0.237	-0.207	-0.180	0.262	-0.102	0.346	79.3	83.5	93.7	114.2	90.2	114.6	0.94	0.92	0.83	0.94	0.92	1.00	0.805808	1.000000	-
Rv1104	-	9	195.7	183.2	188.3	197.5	186.8	182.7	0.049	-0.044	-0.005	0.062	-0.017	-0.048	195.7	183.2	188.3	197.5	186.8	182.7	1.00	1.00	1.00	1.00	1.00	1.00	0.998877	1.000000	-
Rv1105	-	11	54.3	49.6	37.6	58.1	58.6	49.9	0.074	-0.046	-0.403	0.162	0.174	-0.037	77.9	64.1	55.1	73.7	67.8	61.0	0.70	0.77	0.68	0.79	0.86	0.82	0.954077	1.000000	-
Rv1106c	-	17	206.9	223.2	221.8	223.1	223.5	245.5	-0.112	-0.005	-0.014	-0.006	-0.003	0.129	206.9	223.2	228.6	223.1	223.5	245.5	1.00	1.00	0.97	1.00	1.00	1.00	0.855785	1.000000	-
Rv1107c	xseB	2	43.2	53.7	56.2	41.4	28.5	77.6	-0.192	0.092	0.152	-0.249	-0.720	0.585	43.2	53.7	56.2	41.4	28.5	77.6	1.00	1.00	1.00	1.00	1.00	1.00	0.083076	0.670997	-
Rv1108c	xseA	9	160.6	189.0	177.6	193.6	179.5	132.1	-0.097	0.132	0.045	0.165	0.059	-0.369	160.6	189.0	177.6	193.6	179.5	132.1	1.00	1.00	1.00	1.00	1.00	1.00	0.594101	1.000000	-
Rv1109c	-	6	165.2	154.9	177.0	150.7	115.7	175.4	0.076	-0.014	0.173	-0.053	-0.420	0.160	228.8	168.9	236.0	193.7	138.8	210.5	0.72	0.92	0.75	0.78	0.83	0.83	0.985653	1.000000	-
Rv1110	ispH	13	2.2	1.2	2.2	0.3	0.6	0.8	0.212	-0.007	0.209	-0.216	-0.157	-0.101	21.2	15.1	18.7	13.0	14.5	10.1	0.10	0.08	0.12	0.03	0.04	0.08	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1111c	-	22	72.4	67.0	79.0	85.3	76.6	67.3	-0.040	-0.144	0.078	0.182	0.036	-0.139	125.8	122.9	133.7	144.4	140.4	123.3	0.58	0.55	0.59	0.59	0.55	0.55	0.966687	1.000000	-
Rv1112	-	8	179.9	202.6	221.4	172.0	152.9	184.2	-0.043	0.124	0.249	-0.106	-0.271	-0.010	227.2	231.5	272.5	206.4	174.7	196.5	0.79	0.88	0.81	0.83	0.88	0.94	0.994601	1.000000	-
Rv1113	-	2	100.2	129.6	170.6	140.2	188.6	146.9	-0.522	-0.166	0.218	-0.056	0.358	0.008	100.2	129.6	170.6	140.2	188.6	146.9	1.00	1.00	1.00	1.00	1.00	1.00	0.916555	1.000000	-
Rv1114	-	3	129.1	196.7	156.6	159.0	198.0	170.2	-0.370	0.219	-0.101	-0.079	0.228	0.016	145.2	196.7	156.6	159.0	198.0	170.2	0.89	1.00	1.00	1.00	1.00	1.00	0.725081	1.000000	-
Rv1115	-	13	176.6	175.1	148.5	197.2	174.6	143.2	0.060	0.048	-0.182	0.215	0.044	-0.233	313.1	303.5	257.4	307.7	283.7	196.0	0.56	0.58	0.58	0.64	0.62	0.73	0.976826	1.000000	-
Rv1116	-	2	74.6	30.7	48.5	74.9	74.4	81.8	0.204	-0.953	-0.371	0.208	0.200	0.328	74.6	30.7	48.5	74.9	74.4	81.8	1.00	1.00	1.00	1.00	1.00	1.00	0.303594	1.000000	-
Rv1116A	-	5	58.4	46.2	33.1	59.6	64.1	74.8	0.054	-0.255	-0.678	0.081	0.180	0.387	67.4	46.2	47.3	74.5	71.3	74.8	0.87	1.00	0.70	0.80	0.90	1.00	0.193073	1.000000	-
Rv1117	-	3	129.4	147.2	99.2	139.1	108.0	155.5	-0.004	0.176	-0.370	0.097	-0.254	0.253	129.4	147.2	99.2	139.1	108.0	155.5	1.00	1.00	1.00	1.00	1.00	1.00	0.951627	1.000000	-
Rv1118c	-	10	338.6	304.6	325.0	308.5	251.3	256.2	0.184	0.034	0.126	0.052	-0.238	-0.211	350.3	338.5	342.1	342.8	251.3	284.7	0.97	0.90	0.95	0.90	1.00	0.90	0.732389	1.000000	-
Rv1119c	-	3	29.4	23.7	12.6	31.0	28.9	50.0	0.005	-0.254	-0.959	0.070	-0.015	0.682	66.1	35.6	37.8	46.4	34.7	74.9	0.44	0.67	0.33	0.67	0.83	0.67	0.607860	1.000000	-
Rv1120c	-	4	136.3	67.2	123.9	88.1	103.8	118.6	0.344	-0.625	0.212	-0.258	-0.033	0.151	233.6	89.6	123.9	88.1	118.6	158.2	0.58	0.75	1.00	1.00	0.88	0.75	0.046926	0.457386	-
Rv1121	zwf1	23	57.6	55.6	55.9	56.2	55.7	64.1	0.003	-0.044	-0.038	-0.032	-0.043	0.145	78.0	71.1	67.7	76.0	65.7	70.2	0.74	0.78	0.83	0.74	0.85	0.91	0.663884	1.000000	-
Rv1122	gnd2	11	5.4	0.0	4.0	0.8	0.7	0.0	0.610	-0.445	0.404	-0.235	-0.267	-0.445	17.8	0.0	17.6	25.9	14.5	0.0	0.30	0.00	0.23	0.03	0.05	0.00	0.000294	0.006775	-
Rv1123c	bpoB	7	180.6	233.1	212.1	207.6	195.9	186.2	-0.161	0.198	0.065	0.034	-0.047	-0.119	180.6	233.1	212.1	229.4	195.9	217.2	1.00	1.00	1.00	0.90	1.00	0.86	0.383635	1.000000	-
Rv1124	ephC	12	111.0	73.2	88.8	90.6	89.5	70.6	0.330	-0.239	0.024	0.051	0.035	-0.288	153.7	117.1	125.4	130.5	119.4	94.1	0.72	0.62	0.71	0.69	0.75	0.75	0.982009	1.000000	-
Rv1125	-	21	53.2	54.3	65.1	58.5	50.9	36.4	0.004	0.030	0.271	0.130	-0.054	-0.489	71.3	78.6	88.1	81.9	69.0	52.7	0.75	0.69	0.74	0.71	0.74	0.69	0.631471	1.000000	-
Rv1126c	-	8	0.0	0.0	6.7	8.2	16.9	0.0	-1.042	-1.042	0.180	0.358	1.090	-1.042	0.0	0.0	21.3	17.9	30.1	0.0	0.00	0.00	0.31	0.46	0.56	0.00	0.000000	0.000001	-
Rv1127c	ppdK	18	0.2	0.6	8.9	57.9	55.5	0.0	-2.291	-2.197	-0.878	1.302	1.246	-2.352	11.6	10.2	22.9	97.7	80.0	0.0	0.02	0.06	0.39	0.59	0.69	0.00	0.000000	0.000000	-
Rv1128c	-	27	65.2	50.2	74.6	67.9	45.5	44.1	0.158	-0.188	0.340	0.212	-0.318	-0.358	81.2	66.2	95.9	98.1	64.6	56.7	0.80	0.76	0.78	0.69	0.70	0.78	0.011638	0.155305	-
Rv1129c	-	22	67.3	36.6	66.7	68.2	67.2	36.4	0.221	-0.578	0.208	0.238	0.218	-0.585	87.1	48.8	86.3	78.9	79.9	48.5	0.77	0.75	0.77	0.86	0.84	0.75	0.019696	0.232570	-
Rv1130	-	24	119.4	81.6	134.9	127.3	114.1	76.5	0.126	-0.395	0.296	0.215	0.063	-0.484	134.3	81.6	143.9	132.8	119.0	89.5	0.89	1.00	0.94	0.96	0.96	0.85	0.001455	0.027916	-
Rv1131	gltA1	14	55.5	37.8	68.9	61.2	68.4	45.8	-0.018	-0.517	0.270	0.112	0.260	-0.270	68.6	48.1	87.7	77.9	79.7	51.3	0.81	0.79	0.79	0.79	0.86	0.89	0.048626	0.464875	-
Rv1132	-	25	63.7	62.9	67.9	58.2	59.5	78.2	-0.029	-0.046	0.057	-0.148	-0.119	0.248	78.3	74.8	91.7	87.3	80.4	85.0	0.81	0.84	0.74	0.67	0.74	0.92	0.117199	0.805391	-
Rv1133c	metE	31	0.0	0.2	0.0	0.0	0.0	0.0	-0.008	0.038	-0.008	-0.008	-0.008	-0.008	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.02	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1134	-	4	114.8	117.2	99.4	129.9	134.7	76.2	0.034	0.062	-0.165	0.205	0.255	-0.528	137.8	156.2	132.5	173.2	179.6	101.6	0.83	0.75	0.75	0.75	0.75	0.75	0.864226	1.000000	-
Rv1135c	PPE16	24	115.1	93.0	117.2	89.7	105.3	108.1	0.131	-0.164	0.155	-0.213	0.008	0.044	150.7	127.5	170.4	111.4	140.4	129.7	0.76	0.73	0.69	0.81	0.75	0.83	0.757441	1.000000	-
Rv1135A	-	6	123.2	157.7	167.4	188.9	155.3	172.7	-0.371	-0.028	0.056	0.225	-0.049	0.099	138.6	189.2	200.9	226.7	186.4	207.2	0.89	0.83	0.83	0.83	0.83	0.83	0.820222	1.000000	-
Rv1136	-	2	155.8	127.3	159.4	171.7	125.4	133.9	0.094	-0.186	0.127	0.230	-0.208	-0.116	155.8	127.3	159.4	171.7	125.4	133.9	1.00	1.00	1.00	1.00	1.00	1.00	0.674109	1.000000	-
Rv1137c	-	2	281.3	219.7	307.4	309.9	211.1	216.4	0.124	-0.225	0.250	0.262	-0.281	-0.246	281.3	219.7	307.4	309.9	211.1	216.4	1.00	1.00	1.00	1.00	1.00	1.00	0.437437	1.000000	-
Rv1138c	-	13	172.4	171.0	176.9	188.6	140.9	181.8	0.004	-0.008	0.040	0.130	-0.279	0.078	249.1	202.1	209.1	204.4	152.6	181.8	0.69	0.85	0.85	0.92	0.92	1.00	0.050903	0.477893	-
Rv1139c	-	9	103.6	130.7	147.0	111.4	93.3	121.0	-0.178	0.144	0.308	-0.078	-0.321	0.037	155.3	147.1	189.1	136.7	129.2	155.6	0.67	0.89	0.78	0.81	0.72	0.78	0.937457	1.000000	-
Rv1140	-	10	131.3	111.8	126.7	142.0	132.8	107.7	0.064	-0.158	0.015	0.173	0.079	-0.211	171.2	117.7	126.7	177.5	166.0	153.8	0.77	0.95	1.00	0.80	0.80	0.70	0.054206	0.501815	-
Rv1141c	echA11	13	266.8	243.6	213.2	220.9	210.9	214.2	0.221	0.092	-0.096	-0.046	-0.112	-0.090	266.8	243.6	230.9	232.8	249.2	232.0	1.00	1.00	0.92	0.95	0.85	0.92	0.246940	1.000000	-
Rv1142c	echA10	7	167.4	156.0	161.2	160.4	161.7	160.5	0.053	-0.046	0.000	-0.007	0.004	-0.006	175.8	156.0	161.2	160.4	188.7	160.5	0.95	1.00	1.00	1.00	0.86	1.00	0.541740	1.000000	-
Rv1143	mcr	15	163.3	161.1	178.4	170.0	165.4	161.8	-0.029	-0.048	0.095	0.028	-0.011	-0.041	175.0	166.6	178.4	170.0	177.2	167.4	0.93	0.97	1.00	1.00	0.93	0.97	0.702044	1.000000	-
Rv1144	-	10	276.5	227.9	258.0	235.8	248.4	241.8	0.154	-0.120	0.055	-0.072	0.002	-0.036	276.5	227.9	258.0	235.8	248.4	241.8	1.00	1.00	1.00	1.00	1.00	1.00	0.885501	1.000000	-
Rv1145	mmpL13a	10	119.8	151.1	135.0	124.4	120.8	133.8	-0.122	0.201	0.044	-0.070	-0.110	0.031	149.7	159.1	150.0	143.5	134.2	140.9	0.80	0.95	0.90	0.87	0.90	0.95	0.965190	1.000000	-
Rv1146	mmpL13b	21	193.7	197.8	193.8	190.2	201.8	200.4	-0.019	0.011	-0.018	-0.044	0.039	0.029	230.2	213.1	208.7	214.0	211.9	221.5	0.84	0.93	0.93	0.89	0.95	0.90	0.935047	1.000000	-
Rv1147	-	9	132.3	78.2	122.6	114.5	117.0	104.1	0.237	-0.486	0.132	0.038	0.068	-0.094	155.3	87.9	137.9	118.9	117.0	117.1	0.85	0.89	0.89	0.96	1.00	0.89	0.562203	1.000000	-
Rv1148c	-	19	122.6	117.7	130.2	138.9	123.1	119.0	-0.029	-0.086	0.054	0.144	-0.024	-0.071	137.0	135.5	164.9	158.4	141.8	141.3	0.89	0.87	0.79	0.88	0.87	0.84	0.918183	1.000000	-
Rv1149	-	5	87.8	92.7	101.5	95.5	90.6	104.9	-0.115	-0.041	0.084	0.000	-0.072	0.129	94.1	92.7	112.8	95.5	90.6	104.9	0.93	1.00	0.90	1.00	1.00	1.00	0.927314	1.000000	-
Rv1151c	-	9	419.5	352.7	373.6	360.7	360.2	313.7	0.204	-0.043	0.039	-0.011	-0.013	-0.209	419.5	352.7	373.6	360.7	360.2	313.7	1.00	1.00	1.00	1.00	1.00	1.00	0.875924	1.000000	-
Rv1152	-	5	95.8	79.9	87.4	110.2	92.1	115.5	-0.014	-0.262	-0.140	0.179	-0.068	0.242	95.8	99.9	87.4	137.8	92.1	115.5	1.00	0.80	1.00	0.80	1.00	1.00	0.080148	0.656651	-
Rv1153c	omt	18	180.1	157.2	170.4	181.3	181.9	205.6	0.005	-0.185	-0.072	0.014	0.019	0.192	231.5	188.7	211.6	222.5	211.2	217.7	0.78	0.83	0.81	0.81	0.86	0.94	0.904863	1.000000	-
Rv1154c	-	14	128.6	131.9	145.0	143.5	136.7	150.3	-0.112	-0.076	0.056	0.041	-0.027	0.106	128.6	131.9	150.4	143.5	136.7	150.3	1.00	1.00	0.96	1.00	1.00	1.00	0.840708	1.000000	-
Rv1155	-	10	187.5	153.7	174.6	160.1	153.2	171.0	0.165	-0.114	0.065	-0.057	-0.118	0.036	187.5	153.7	174.6	160.1	153.2	171.0	1.00	1.00	1.00	1.00	1.00	1.00	0.952655	1.000000	-
Rv1156	-	12	96.4	86.5	75.6	82.5	98.8	97.9	0.100	-0.049	-0.232	-0.113	0.134	0.121	108.4	94.3	86.3	92.8	107.8	106.8	0.89	0.92	0.88	0.89	0.92	0.92	0.968369	1.000000	-
Rv1157c	-	8	118.1	214.0	132.7	265.5	249.2	128.4	-0.624	0.208	-0.462	0.512	0.423	-0.507	177.1	244.6	354.0	265.5	284.8	146.8	0.67	0.88	0.38	1.00	0.88	0.88	0.001009	0.020431	-
Rv1158c	-	11	41.7	118.5	88.7	102.3	152.7	115.1	-1.211	0.191	-0.208	-0.011	0.544	0.151	76.5	153.4	130.1	160.8	168.0	126.7	0.55	0.77	0.68	0.64	0.91	0.91	0.025562	0.284890	-
Rv1159	pimE	25	139.9	163.7	101.2	162.6	206.3	179.4	-0.177	0.042	-0.626	0.033	0.367	0.171	149.9	170.5	103.3	171.8	214.9	190.9	0.93	0.96	0.98	0.95	0.96	0.94	0.000029	0.000817	-
Rv1159A	phhB	11	53.4	86.0	58.5	77.6	60.6	73.3	-0.326	0.313	-0.205	0.173	-0.158	0.096	73.5	105.1	99.1	116.3	74.1	115.1	0.73	0.82	0.59	0.67	0.82	0.64	0.119160	0.816922	-
Rv1160	mutT2	4	349.3	234.4	279.8	293.3	303.4	262.1	0.279	-0.287	-0.036	0.031	0.079	-0.129	349.3	234.4	279.8	293.3	303.4	262.1	1.00	1.00	1.00	1.00	1.00	1.00	0.291006	1.000000	-
Rv1161	narG	66	95.3	95.1	97.0	96.4	97.0	96.5	-0.013	-0.016	0.011	0.003	0.011	0.004	120.9	112.1	115.3	118.6	114.3	120.2	0.79	0.85	0.84	0.81	0.85	0.80	0.919731	1.000000	-
Rv1162	narH	34	192.3	182.1	189.3	184.3	185.4	198.8	0.027	-0.050	0.005	-0.033	-0.025	0.073	213.2	190.5	198.0	195.8	200.1	211.2	0.90	0.96	0.96	0.94	0.93	0.94	0.950946	1.000000	-
Rv1163	narJ	13	248.5	242.4	263.1	220.8	220.1	219.0	0.075	0.040	0.156	-0.092	-0.096	-0.103	293.7	262.7	311.0	220.8	248.9	219.0	0.85	0.92	0.85	1.00	0.88	1.00	0.083398	0.672241	-
Rv1164	narI	18	324.6	248.9	251.8	273.5	240.6	238.5	0.298	-0.078	-0.061	0.055	-0.126	-0.138	357.7	271.5	274.7	295.3	270.7	268.3	0.91	0.92	0.92	0.93	0.89	0.89	0.977474	1.000000	-
Rv1165	typA	15	116.0	130.6	126.7	129.0	147.2	143.7	-0.182	-0.017	-0.059	-0.034	0.150	0.116	124.2	135.1	135.7	138.2	147.2	154.0	0.93	0.97	0.93	0.93	1.00	0.93	0.793271	1.000000	-
Rv1166	lpqW	22	0.3	0.0	0.0	0.2	0.3	0.0	0.053	-0.042	-0.042	0.019	0.050	-0.042	22.6	0.0	0.0	14.4	14.5	0.0	0.02	0.00	0.00	0.02	0.02	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1167c	-	9	125.4	155.6	115.2	130.4	114.1	112.1	-0.001	0.300	-0.118	0.054	-0.131	-0.156	211.6	200.1	172.8	220.1	171.2	144.1	0.59	0.78	0.67	0.59	0.67	0.78	0.948463	1.000000	-
Rv1168c	PPE17	14	111.5	125.5	136.2	132.5	138.2	149.1	-0.236	-0.072	0.042	0.004	0.062	0.168	120.1	135.1	158.9	150.4	148.8	160.6	0.93	0.93	0.86	0.88	0.93	0.93	0.917231	1.000000	-
Rv1169c	PE11	3	131.9	151.1	121.8	127.8	122.4	148.8	-0.022	0.168	-0.133	-0.065	-0.125	0.146	131.9	151.1	146.1	127.8	122.4	148.8	1.00	1.00	0.83	1.00	1.00	1.00	0.936699	1.000000	-
Rv1170	mshB	11	138.1	148.9	179.0	84.7	95.6	131.4	0.088	0.193	0.451	-0.586	-0.420	0.019	162.7	156.0	218.8	107.5	105.2	137.7	0.85	0.95	0.82	0.79	0.91	0.95	0.257030	1.000000	-
Rv1171	-	5	330.8	228.3	305.7	291.3	294.5	309.9	0.170	-0.355	0.058	-0.010	0.005	0.078	330.8	228.3	305.7	291.3	294.5	309.9	1.00	1.00	1.00	1.00	1.00	1.00	0.955831	1.000000	-
Rv1172c	PE12	15	114.8	123.8	136.9	130.7	131.3	123.6	-0.138	-0.033	0.106	0.041	0.048	-0.036	139.7	142.9	171.1	163.3	145.9	137.3	0.82	0.87	0.80	0.80	0.90	0.90	0.985708	1.000000	-
Rv1173	fbiC	38	107.1	101.0	132.5	88.0	94.5	81.6	0.084	0.003	0.378	-0.186	-0.088	-0.289	122.1	109.6	152.5	99.3	108.9	96.8	0.88	0.92	0.87	0.89	0.87	0.84	0.110974	0.784724	-
Rv1174c	TB8.4	7	298.1	305.9	285.2	294.9	316.9	269.6	0.014	0.051	-0.048	-0.001	0.101	-0.128	298.1	305.9	307.1	294.9	316.9	269.6	1.00	1.00	0.93	1.00	1.00	1.00	0.943243	1.000000	-
Rv1175c	fadH	23	181.4	181.1	189.9	175.6	189.6	168.3	0.003	0.001	0.068	-0.042	0.066	-0.102	186.8	193.7	189.9	183.6	193.8	180.0	0.97	0.93	1.00	0.96	0.98	0.93	0.697328	1.000000	-
Rv1176c	-	13	208.5	205.8	229.5	232.2	201.5	180.3	-0.008	-0.026	0.128	0.144	-0.056	-0.212	232.3	222.9	248.7	244.8	218.3	213.1	0.90	0.92	0.92	0.95	0.92	0.85	0.982578	1.000000	-
Rv1177	fdxC	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1178	-	20	246.2	200.7	213.2	195.5	171.8	199.8	0.262	-0.027	0.059	-0.064	-0.245	-0.033	278.7	236.1	236.9	213.3	180.8	222.0	0.88	0.85	0.90	0.92	0.95	0.90	0.815386	1.000000	-
Rv1179c	-	37	221.7	230.1	208.7	215.8	202.8	186.8	0.070	0.122	-0.016	0.032	-0.055	-0.171	251.1	243.2	234.0	239.5	217.5	200.3	0.88	0.95	0.89	0.90	0.93	0.93	0.967212	1.000000	-
Rv1180	pks3	23	76.2	56.6	60.6	58.6	57.2	70.3	0.250	-0.148	-0.057	-0.102	-0.133	0.142	99.2	81.4	90.0	84.3	79.8	92.5	0.77	0.70	0.67	0.70	0.72	0.76	0.953743	1.000000	-
Rv1181	pks4	63	86.0	75.0	94.4	80.5	78.9	75.4	0.069	-0.116	0.197	-0.019	-0.047	-0.109	105.5	90.8	115.4	102.2	98.4	84.8	0.81	0.83	0.82	0.79	0.80	0.89	0.398468	1.000000	-
Rv1182	papA3	38	57.7	58.4	69.1	58.6	53.6	47.7	0.005	0.020	0.246	0.024	-0.093	-0.246	80.3	74.0	93.8	75.0	60.8	62.6	0.72	0.79	0.74	0.78	0.88	0.76	0.246942	1.000000	-
Rv1183	mmpL10	50	43.0	39.6	49.4	36.3	43.2	41.2	0.025	-0.078	0.208	-0.190	0.034	-0.028	69.3	53.6	70.6	55.6	50.3	50.3	0.62	0.74	0.70	0.65	0.86	0.82	0.002070	0.037709	-
Rv1184c	-	21	52.9	45.1	66.0	46.8	43.3	47.6	0.067	-0.142	0.361	-0.094	-0.194	-0.072	66.6	61.1	79.1	53.6	49.1	57.1	0.79	0.74	0.83	0.87	0.88	0.83	0.343588	1.000000	-
Rv1185c	fadD21	28	47.5	51.4	49.1	45.2	45.5	56.1	-0.045	0.059	-0.001	-0.108	-0.101	0.175	73.8	70.2	83.3	67.8	67.0	78.5	0.64	0.73	0.59	0.67	0.68	0.71	0.969555	1.000000	-
Rv1186c	-	18	70.9	67.2	80.8	73.0	72.8	71.6	-0.034	-0.105	0.143	0.005	0.001	-0.021	109.4	105.3	103.9	96.1	84.5	85.9	0.65	0.64	0.78	0.76	0.86	0.83	0.566456	1.000000	-
Rv1187	rocA	22	58.0	58.6	81.5	68.6	54.9	60.0	-0.122	-0.110	0.334	0.101	-0.195	-0.078	93.4	92.0	112.0	110.4	83.3	91.0	0.62	0.64	0.73	0.62	0.66	0.66	0.899412	1.000000	-
Rv1188	-	22	54.5	54.3	54.2	59.2	63.2	64.3	-0.089	-0.094	-0.096	0.022	0.107	0.131	85.6	95.6	74.5	102.9	92.6	91.3	0.64	0.57	0.73	0.58	0.68	0.70	0.343008	1.000000	-
Rv1189	sigI	6	115.1	90.7	76.7	82.6	79.0	81.4	0.375	0.048	-0.181	-0.079	-0.140	-0.100	138.1	108.9	83.6	87.5	79.0	88.8	0.83	0.83	0.92	0.94	1.00	0.92	0.499441	1.000000	-
Rv1190	-	9	102.8	112.6	111.6	88.9	110.0	108.2	-0.038	0.087	0.075	-0.237	0.055	0.032	146.1	135.1	154.5	126.4	152.3	139.1	0.70	0.83	0.72	0.70	0.72	0.78	0.998811	1.000000	-
Rv1191	-	8	163.6	120.1	126.2	162.2	152.4	124.0	0.203	-0.227	-0.158	0.191	0.104	-0.182	196.3	137.3	155.4	185.4	174.2	141.8	0.83	0.88	0.81	0.88	0.88	0.88	0.992380	1.000000	-
Rv1192	-	13	76.1	76.2	76.8	64.1	66.6	79.0	0.053	0.056	0.066	-0.178	-0.126	0.105	106.0	110.1	124.8	89.2	91.1	102.7	0.72	0.69	0.62	0.72	0.73	0.77	0.980411	1.000000	-
Rv1193	fadD36	18	49.6	44.9	54.3	44.0	37.6	37.8	0.135	0.006	0.256	-0.021	-0.223	-0.216	70.4	64.7	78.2	55.2	52.0	50.4	0.70	0.69	0.69	0.80	0.72	0.75	0.711887	1.000000	-
Rv1194c	-	16	59.4	59.0	58.1	20.9	18.3	46.2	0.404	0.396	0.375	-0.909	-1.062	0.073	69.5	62.9	80.8	29.5	23.4	49.3	0.85	0.94	0.72	0.71	0.78	0.94	0.000000	0.000000	-
Rv1195	PE13	5	221.0	171.0	209.2	126.3	103.9	132.2	0.449	0.088	0.371	-0.335	-0.605	-0.272	221.0	171.0	209.2	126.3	103.9	132.2	1.00	1.00	1.00	1.00	1.00	1.00	0.500218	1.000000	-
Rv1196	PPE18	7	26.1	24.8	23.7	22.5	11.0	24.5	0.201	0.136	0.082	0.021	-0.763	0.123	61.0	38.5	66.3	39.4	19.2	42.9	0.43	0.64	0.36	0.57	0.57	0.57	0.143097	0.923879	-
Rv1197	esxK	2	183.0	203.7	199.2	126.9	146.2	161.9	0.102	0.253	0.222	-0.410	-0.212	-0.070	183.0	203.7	199.2	126.9	146.2	161.9	1.00	1.00	1.00	1.00	1.00	1.00	0.891258	1.000000	-
Rv1198	esxL	3	173.8	205.1	121.2	157.0	200.1	246.7	-0.080	0.153	-0.582	-0.223	0.118	0.413	173.8	205.1	121.2	157.0	200.1	246.7	1.00	1.00	1.00	1.00	1.00	1.00	0.024056	0.271933	-
Rv1199c	-	15	241.5	252.2	268.8	266.2	222.7	244.8	-0.045	0.016	0.106	0.093	-0.160	-0.026	258.8	270.2	288.0	266.2	222.7	244.8	0.93	0.93	0.93	1.00	1.00	1.00	0.457235	1.000000	-
Rv1200	-	24	182.0	186.3	166.6	189.1	188.7	177.0	0.003	0.036	-0.121	0.057	0.054	-0.036	189.9	198.7	181.8	194.5	201.3	184.7	0.96	0.94	0.92	0.97	0.94	0.96	0.956680	1.000000	-
Rv1201c	-	10	0.0	0.0	0.6	0.0	0.7	0.0	-0.064	-0.064	0.107	-0.064	0.132	-0.064	0.0	0.0	12.6	0.0	14.5	0.0	0.00	0.00	0.05	0.00	0.05	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1202	dapE	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1203c	-	6	71.4	58.0	70.2	58.1	48.3	81.9	0.133	-0.145	0.111	-0.142	-0.387	0.319	75.6	58.0	76.6	65.4	52.6	81.9	0.94	1.00	0.92	0.89	0.92	1.00	0.800476	1.000000	-
Rv1204c	-	16	370.2	331.6	349.6	317.7	356.4	308.6	0.125	-0.032	0.044	-0.092	0.071	-0.134	378.1	353.7	349.6	317.7	356.4	308.6	0.98	0.94	1.00	1.00	1.00	1.00	0.601340	1.000000	-
Rv1205	-	12	143.9	129.1	153.6	165.7	151.3	160.4	-0.064	-0.215	0.027	0.133	0.006	0.087	152.3	163.1	184.3	180.8	157.8	160.4	0.94	0.79	0.83	0.92	0.96	1.00	0.343259	1.000000	-
Rv1206	fadD6	29	131.9	125.2	106.9	95.8	117.5	126.7	0.163	0.090	-0.129	-0.280	0.002	0.107	157.2	148.2	126.5	120.8	133.7	138.7	0.84	0.84	0.84	0.79	0.88	0.91	0.771919	1.000000	-
Rv1207	folP2	10	116.3	142.8	127.0	154.5	156.2	143.8	-0.258	0.027	-0.136	0.136	0.152	0.036	139.6	178.5	133.7	185.4	164.5	159.8	0.83	0.80	0.95	0.83	0.95	0.90	0.696390	1.000000	-
Rv1208	-	12	23.8	19.0	23.8	29.2	46.9	8.5	-0.070	-0.332	-0.070	0.181	0.782	-1.163	47.5	32.6	40.7	43.9	56.3	15.7	0.50	0.58	0.58	0.67	0.83	0.54	0.000295	0.006775	-
Rv1209	-	3	218.4	168.4	194.6	183.4	196.3	227.2	0.138	-0.228	-0.025	-0.108	-0.012	0.194	218.4	168.4	194.6	183.4	196.3	227.2	1.00	1.00	1.00	1.00	1.00	1.00	0.757041	1.000000	-
Rv1210	tagA	11	203.7	238.0	210.5	187.7	177.7	234.5	-0.034	0.186	0.012	-0.149	-0.226	0.164	203.7	238.0	210.5	187.7	177.7	234.5	1.00	1.00	1.00	1.00	1.00	1.00	0.679076	1.000000	-
Rv1211	-	2	2.7	2.6	0.0	7.0	0.0	0.0	0.131	0.106	-0.498	0.769	-0.498	-0.498	16.4	10.4	0.0	14.1	0.0	0.0	0.17	0.25	0.00	0.50	0.00	0.00	0.375567	1.000000	-
Rv1212c	-	27	128.5	127.6	144.3	109.0	101.9	104.9	0.102	0.093	0.263	-0.125	-0.219	-0.178	144.6	137.8	169.4	114.7	127.9	118.1	0.89	0.93	0.85	0.95	0.80	0.89	0.094117	0.716656	-
Rv1213	glgC	27	138.2	142.4	118.5	155.8	160.2	147.3	-0.055	-0.013	-0.269	0.112	0.152	0.034	157.7	150.8	133.3	168.3	166.4	162.3	0.88	0.94	0.89	0.93	0.96	0.91	0.680859	1.000000	-
Rv1214c	PE14	5	306.3	205.1	211.3	266.7	213.2	225.0	0.358	-0.210	-0.168	0.161	-0.155	-0.079	306.3	205.1	211.3	266.7	213.2	225.0	1.00	1.00	1.00	1.00	1.00	1.00	0.437411	1.000000	-
Rv1215c	-	22	175.6	179.1	165.8	160.7	171.3	193.1	0.011	0.038	-0.070	-0.113	-0.024	0.144	187.0	202.0	202.6	189.4	171.3	207.2	0.94	0.89	0.82	0.85	1.00	0.93	0.114913	0.798787	-
Rv1216c	-	15	78.4	82.1	64.2	70.7	72.1	87.0	0.047	0.108	-0.224	-0.093	-0.066	0.188	90.5	91.2	83.7	81.6	77.3	93.2	0.87	0.90	0.77	0.87	0.93	0.93	0.903662	1.000000	-
Rv1217c	-	18	88.8	80.1	76.4	87.5	91.4	84.4	0.064	-0.077	-0.141	0.044	0.103	-0.006	90.5	80.1	86.0	90.9	94.0	94.9	0.98	1.00	0.89	0.96	0.97	0.89	0.254586	1.000000	-
Rv1218c	-	5	97.2	74.5	116.9	103.4	136.4	117.3	-0.140	-0.502	0.114	-0.055	0.328	0.119	112.1	74.5	116.9	103.4	136.4	117.3	0.87	1.00	1.00	1.00	1.00	1.00	0.525985	1.000000	-
Rv1219c	-	10	154.0	154.3	199.7	131.7	159.0	136.4	-0.016	-0.014	0.348	-0.235	0.028	-0.186	177.7	192.8	210.3	131.7	176.7	136.4	0.87	0.80	0.95	1.00	0.90	1.00	0.047573	0.458493	-
Rv1220c	-	10	220.0	259.7	244.9	214.0	256.0	227.2	-0.105	0.129	0.047	-0.144	0.109	-0.059	253.8	288.5	272.1	214.0	284.5	252.5	0.87	0.90	0.90	1.00	0.90	0.90	0.572494	1.000000	-
Rv1221	sigE	16	20.2	26.3	21.5	15.5	22.7	26.6	-0.108	0.208	-0.033	-0.406	0.029	0.220	60.5	49.6	57.3	43.7	48.4	53.2	0.33	0.53	0.38	0.35	0.47	0.50	0.912045	1.000000	-
Rv1222	-	2	118.1	158.0	151.4	213.0	233.7	152.4	-0.516	-0.112	-0.171	0.308	0.439	-0.162	118.1	158.0	151.4	213.0	233.7	152.4	1.00	1.00	1.00	1.00	1.00	1.00	0.109828	0.784724	-
Rv1223	htrA	17	0.0	0.3	0.0	0.0	0.0	0.0	-0.014	0.068	-0.014	-0.014	-0.014	-0.014	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.03	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1224	tatB	5	2.6	3.0	0.0	0.9	2.4	3.0	0.125	0.206	-0.479	-0.249	0.077	0.192	19.5	10.1	0.0	13.0	11.8	14.8	0.13	0.30	0.00	0.07	0.20	0.20	0.879203	1.000000	-
Rv1225c	-	6	173.1	182.6	177.7	160.6	220.2	135.6	-0.015	0.060	0.022	-0.120	0.323	-0.356	194.7	182.6	177.7	160.6	220.2	135.6	0.89	1.00	1.00	1.00	1.00	1.00	0.622542	1.000000	-
Rv1226c	-	15	297.6	280.0	290.2	271.8	258.5	222.2	0.138	0.051	0.102	0.009	-0.062	-0.276	326.6	289.7	311.0	271.8	258.5	229.8	0.91	0.97	0.93	1.00	1.00	0.97	0.572765	1.000000	-
Rv1227c	-	6	165.3	224.5	179.5	162.5	164.4	182.1	-0.117	0.313	-0.002	-0.141	-0.125	0.018	198.4	224.5	215.4	195.1	197.2	218.5	0.83	1.00	0.83	0.83	0.83	0.83	0.905970	1.000000	-
Rv1228	lpqX	8	157.8	179.8	190.8	187.1	191.6	216.0	-0.239	-0.057	0.027	-0.001	0.032	0.202	157.8	179.8	190.8	187.1	191.6	216.0	1.00	1.00	1.00	1.00	1.00	1.00	0.867158	1.000000	-
Rv1229c	mrp	14	0.0	0.0	0.4	0.0	0.0	0.0	-0.021	-0.021	0.103	-0.021	-0.021	-0.021	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.04	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1230c	-	20	182.8	198.8	220.6	198.2	197.3	193.9	-0.116	0.002	0.148	-0.003	-0.009	-0.034	192.5	209.3	252.1	208.6	207.7	204.1	0.95	0.95	0.88	0.95	0.95	0.95	0.927074	1.000000	-
Rv1231c	-	7	155.1	125.8	166.6	165.8	164.3	138.4	0.022	-0.269	0.122	0.115	0.103	-0.136	171.4	125.8	194.3	165.8	164.3	138.4	0.90	1.00	0.86	1.00	1.00	1.00	0.515497	1.000000	-
Rv1232c	-	8	147.6	123.8	124.9	131.5	125.5	125.7	0.178	-0.066	-0.054	0.018	-0.047	-0.045	147.6	141.5	142.7	131.5	125.5	125.7	1.00	0.88	0.88	1.00	1.00	1.00	0.427598	1.000000	-
Rv1233c	-	17	148.3	144.7	139.9	133.7	134.5	167.2	0.034	0.000	-0.048	-0.110	-0.102	0.202	171.9	182.2	158.5	154.9	147.5	183.4	0.86	0.79	0.88	0.86	0.91	0.91	0.878896	1.000000	-
Rv1234	-	8	32.3	48.8	32.1	39.8	45.9	57.1	-0.352	0.175	-0.363	-0.089	0.095	0.381	43.1	55.8	42.7	50.3	52.5	65.2	0.75	0.88	0.75	0.79	0.88	0.88	0.641406	1.000000	-
Rv1235	lpqY	28	69.7	56.7	61.2	66.7	66.5	81.5	0.051	-0.224	-0.121	-0.007	-0.011	0.264	106.4	75.6	95.3	87.6	84.6	99.2	0.65	0.75	0.64	0.76	0.79	0.82	0.588102	1.000000	-
Rv1236	sugA	18	128.7	126.6	139.5	143.8	136.2	144.8	-0.083	-0.106	0.030	0.071	-0.004	0.081	136.3	142.4	162.1	152.3	136.2	148.9	0.94	0.89	0.86	0.94	1.00	0.97	0.475714	1.000000	-
Rv1237	sugB	11	45.4	60.9	39.3	60.0	45.9	57.7	-0.165	0.221	-0.353	0.201	-0.150	0.149	59.9	63.8	57.6	70.7	48.1	60.4	0.76	0.95	0.68	0.85	0.95	0.95	0.218676	1.000000	-
Rv1238	sugC	24	49.9	46.8	52.5	50.9	58.9	55.1	-0.064	-0.148	0.003	-0.036	0.156	0.069	66.5	66.0	68.1	61.1	70.6	69.6	0.75	0.71	0.77	0.83	0.83	0.79	0.859039	1.000000	-
Rv1239c	corA	23	133.5	128.7	104.1	97.1	96.4	121.1	0.225	0.174	-0.119	-0.214	-0.224	0.090	167.5	148.0	129.4	119.7	123.2	142.8	0.80	0.87	0.80	0.81	0.78	0.85	0.876015	1.000000	-
Rv1240	mdh	3	0.0	1.7	4.2	0.0	0.0	0.0	-0.260	0.169	0.619	-0.260	-0.260	-0.260	0.0	10.4	12.6	0.0	0.0	0.0	0.00	0.17	0.33	0.00	0.00	0.00	0.209104	1.000000	-
Rv1241	-	1	147.3	376.0	283.8	102.9	187.6	186.4	-0.524	0.799	0.399	-1.022	-0.185	-0.195	147.3	376.0	283.8	102.9	187.6	186.4	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1242	-	9	277.8	295.7	342.0	235.3	299.1	267.1	-0.042	0.046	0.253	-0.277	0.063	-0.098	277.8	295.7	342.0	264.8	299.1	282.8	1.00	1.00	1.00	0.89	1.00	0.94	0.309245	1.000000	-
Rv1243c	PE_PGRS23	15	266.4	248.0	235.6	278.8	243.5	221.6	0.096	-0.005	-0.078	0.160	-0.032	-0.165	278.8	286.2	271.8	298.8	280.9	277.0	0.96	0.87	0.87	0.93	0.87	0.80	0.597452	1.000000	-
Rv1244	lpqZ	8	102.7	134.0	84.9	116.9	100.9	74.0	0.007	0.374	-0.254	0.185	-0.018	-0.441	107.2	134.0	90.6	116.9	100.9	74.0	0.96	1.00	0.94	1.00	1.00	1.00	0.420332	1.000000	-
Rv1245c	-	13	103.6	95.0	107.3	96.2	108.0	92.9	0.042	-0.077	0.090	-0.061	0.099	-0.107	126.3	117.6	139.5	107.2	127.6	105.1	0.82	0.81	0.77	0.90	0.85	0.88	0.953612	1.000000	-
Rv1246c	-	7	143.1	138.0	131.3	159.7	144.4	159.0	-0.027	-0.078	-0.147	0.126	-0.015	0.120	143.1	138.0	131.3	159.7	144.4	159.0	1.00	1.00	1.00	1.00	1.00	1.00	0.980802	1.000000	-
Rv1247c	-	4	44.9	87.3	66.4	51.2	69.9	63.5	-0.464	0.423	0.052	-0.294	0.122	-0.008	59.9	87.3	75.9	55.8	93.2	63.5	0.75	1.00	0.88	0.92	0.75	1.00	0.294585	1.000000	-
Rv1248c	kgd	41	9.3	8.1	8.0	1.6	1.7	7.5	0.379	0.245	0.234	-0.738	-0.717	0.177	22.5	18.3	24.2	15.2	14.0	13.9	0.41	0.44	0.33	0.11	0.12	0.54	0.000000	0.000000	-
Rv1249c	-	11	248.9	213.1	237.4	246.7	211.0	195.3	0.140	-0.079	0.073	0.128	-0.093	-0.202	248.9	213.1	248.7	246.7	211.0	195.3	1.00	1.00	0.95	1.00	1.00	1.00	0.910376	1.000000	-
Rv1250	-	26	99.5	108.8	84.3	96.8	100.3	118.2	-0.025	0.098	-0.252	-0.062	-0.014	0.213	109.3	117.8	89.4	100.7	110.9	122.9	0.91	0.92	0.94	0.96	0.90	0.96	0.341797	1.000000	-
Rv1251c	-	53	118.9	124.0	111.0	125.6	114.3	101.5	0.036	0.093	-0.060	0.112	-0.018	-0.183	126.0	141.3	135.2	146.9	137.7	128.0	0.94	0.88	0.82	0.86	0.83	0.79	0.001126	0.022133	-
Rv1252c	lprE	7	215.6	213.5	186.7	201.7	193.0	221.1	0.069	0.055	-0.133	-0.024	-0.087	0.105	215.6	213.5	201.1	201.7	193.0	221.1	1.00	1.00	0.93	1.00	1.00	1.00	0.944452	1.000000	-
Rv1253	deaD	32	134.4	138.6	139.9	155.2	137.8	120.7	-0.034	0.008	0.021	0.167	0.000	-0.184	169.7	170.5	172.1	169.3	144.6	148.5	0.79	0.81	0.81	0.92	0.95	0.81	0.152519	0.953839	-
Rv1254	-	26	3.7	7.3	1.9	2.5	7.1	5.4	-0.144	0.343	-0.482	-0.361	0.327	0.109	19.5	18.0	33.2	15.1	24.7	14.8	0.19	0.40	0.06	0.17	0.29	0.37	0.000025	0.000732	-
Rv1255c	-	8	106.0	117.2	145.9	106.2	114.8	84.2	-0.080	0.058	0.362	-0.078	0.030	-0.396	121.1	117.2	166.7	127.4	141.3	89.8	0.88	1.00	0.88	0.83	0.81	0.94	0.474452	1.000000	-
Rv1256c	cyp130	14	231.4	253.0	281.7	250.6	263.8	230.3	-0.120	0.007	0.159	-0.007	0.066	-0.126	242.9	262.4	315.5	256.7	284.1	268.7	0.95	0.96	0.89	0.98	0.93	0.86	0.673507	1.000000	-
Rv1257c	-	15	121.5	108.6	114.2	133.5	89.8	114.3	0.093	-0.063	0.006	0.223	-0.324	0.008	188.6	155.1	155.7	182.0	112.3	122.5	0.64	0.70	0.73	0.73	0.80	0.93	0.314385	1.000000	-
Rv1258c	-	21	207.8	205.8	204.7	219.0	204.4	220.5	-0.017	-0.031	-0.039	0.057	-0.040	0.066	218.2	227.5	226.2	237.9	220.1	231.5	0.95	0.90	0.90	0.92	0.93	0.95	0.985200	1.000000	-
Rv1259	-	11	93.8	84.0	63.5	81.9	78.9	84.3	0.199	0.048	-0.328	0.013	-0.037	0.053	119.0	102.6	77.7	100.0	96.4	103.0	0.79	0.82	0.82	0.82	0.82	0.82	0.924065	1.000000	-
Rv1260	-	24	76.2	54.5	57.8	53.9	61.7	55.6	0.322	-0.125	-0.049	-0.141	0.038	-0.100	91.4	68.9	74.9	73.2	80.0	70.2	0.83	0.79	0.77	0.74	0.77	0.79	0.671537	1.000000	-
Rv1261c	-	10	117.0	106.1	133.9	123.7	102.8	114.1	0.009	-0.127	0.196	0.086	-0.169	-0.026	121.0	106.1	141.0	123.7	102.8	114.1	0.97	1.00	0.95	1.00	1.00	1.00	0.873432	1.000000	-
Rv1262c	-	4	67.5	94.7	71.8	77.0	91.1	62.8	-0.186	0.274	-0.102	-0.009	0.220	-0.283	73.7	94.7	95.8	84.0	91.1	71.7	0.92	1.00	0.75	0.92	1.00	0.88	0.855848	1.000000	-
Rv1263	amiB2	21	121.2	97.5	95.6	98.3	107.9	79.3	0.266	-0.035	-0.061	-0.023	0.105	-0.317	141.4	99.8	108.5	110.6	125.9	95.1	0.86	0.98	0.88	0.89	0.86	0.83	0.249906	1.000000	-
Rv1264	-	13	244.2	232.6	202.6	219.5	222.7	260.0	0.083	0.014	-0.180	-0.067	-0.047	0.172	288.6	318.2	263.4	285.4	275.8	355.8	0.85	0.73	0.77	0.77	0.81	0.73	0.831694	1.000000	-
Rv1265	-	11	13.5	12.1	12.8	14.9	14.6	11.4	0.021	-0.093	-0.035	0.130	0.106	-0.151	24.7	24.1	31.2	30.8	26.8	19.3	0.55	0.50	0.41	0.48	0.55	0.59	0.763596	1.000000	-
Rv1266c	pknH	26	145.9	161.9	155.9	161.1	160.5	150.0	-0.093	0.053	0.000	0.046	0.041	-0.054	151.7	161.9	155.9	167.5	160.5	150.0	0.96	1.00	1.00	0.96	1.00	1.00	0.328362	1.000000	-
Rv1267c	embR	19	164.6	187.7	180.3	176.6	175.6	178.0	-0.103	0.081	0.025	-0.004	-0.012	0.007	177.1	209.7	201.5	186.4	190.6	187.9	0.93	0.89	0.89	0.95	0.92	0.95	0.969666	1.000000	-
Rv1268c	-	11	191.0	167.8	174.8	171.9	192.8	164.1	0.106	-0.075	-0.018	-0.041	0.120	-0.106	242.4	205.1	213.6	210.1	249.5	212.4	0.79	0.82	0.82	0.82	0.77	0.77	0.999344	1.000000	-
Rv1269c	-	7	96.2	102.6	94.5	98.3	96.4	98.8	-0.022	0.066	-0.047	0.006	-0.020	0.014	126.3	102.6	110.3	108.6	103.8	106.4	0.76	1.00	0.86	0.90	0.93	0.93	0.831532	1.000000	-
Rv1270c	lprA	10	101.5	81.6	78.6	87.6	81.5	110.9	0.160	-0.138	-0.189	-0.040	-0.140	0.282	117.1	90.6	98.2	101.1	101.8	116.7	0.87	0.90	0.80	0.87	0.80	0.95	0.949847	1.000000	-
Rv1271c	-	4	34.9	23.2	36.0	37.9	32.0	20.1	0.160	-0.337	0.201	0.265	0.054	-0.509	46.5	26.6	57.6	50.5	36.6	20.1	0.75	0.88	0.62	0.75	0.88	1.00	0.239888	1.000000	-
Rv1272c	-	28	39.0	46.2	41.8	61.1	58.4	54.0	-0.323	-0.106	-0.235	0.262	0.202	0.100	68.3	78.4	73.2	93.3	81.7	81.8	0.57	0.59	0.57	0.65	0.71	0.66	0.807608	1.000000	-
Rv1273c	-	29	90.2	102.7	78.2	110.6	119.8	72.6	-0.081	0.097	-0.276	0.199	0.310	-0.376	115.3	124.1	103.0	131.8	139.0	91.5	0.78	0.83	0.76	0.84	0.86	0.79	0.331552	1.000000	-
Rv1274	lprB	3	8.3	16.9	7.3	12.8	13.2	5.2	-0.234	0.489	-0.349	0.192	0.223	-0.618	18.7	25.4	21.8	19.3	19.9	15.6	0.44	0.67	0.33	0.67	0.67	0.33	0.760949	1.000000	-
Rv1275	lprC	6	7.0	21.2	9.4	14.9	27.2	9.2	-0.729	0.405	-0.464	0.005	0.702	-0.479	17.9	25.5	22.5	24.3	36.3	15.8	0.39	0.83	0.42	0.61	0.75	0.58	0.034716	0.365475	-
Rv1276c	-	6	70.5	71.4	77.1	57.1	95.1	73.4	-0.066	-0.050	0.054	-0.350	0.340	-0.014	84.7	71.4	92.5	114.2	114.2	88.0	0.83	1.00	0.83	0.50	0.83	0.83	0.063510	0.556273	-
Rv1277	-	19	111.3	126.2	115.1	104.6	109.2	107.5	-0.013	0.161	0.034	-0.098	-0.038	-0.060	117.4	133.2	118.2	110.4	109.2	113.5	0.95	0.95	0.97	0.95	1.00	0.95	0.856506	1.000000	-
Rv1278	-	24	115.7	117.8	121.5	134.0	128.9	116.5	-0.078	-0.053	-0.011	0.126	0.072	-0.068	151.4	166.3	161.9	175.5	162.8	159.8	0.76	0.71	0.75	0.76	0.79	0.73	0.967923	1.000000	-
Rv1279	-	25	124.4	106.1	116.3	125.2	121.9	117.2	0.067	-0.153	-0.026	0.076	0.039	-0.016	137.2	112.9	123.8	134.2	129.6	124.6	0.91	0.94	0.94	0.93	0.94	0.94	0.997162	1.000000	-
Rv1280c	oppA	25	101.7	115.2	124.1	145.9	139.1	92.9	-0.226	-0.054	0.049	0.274	0.207	-0.351	119.1	144.0	144.3	168.3	154.5	100.9	0.85	0.80	0.86	0.87	0.90	0.92	0.065307	0.570182	-
Rv1281c	oppD	25	50.7	61.2	59.0	65.2	58.1	45.1	-0.145	0.106	0.057	0.189	0.035	-0.296	80.9	92.8	92.2	99.7	80.7	70.5	0.63	0.66	0.64	0.65	0.72	0.64	0.857514	1.000000	-
Rv1282c	oppC	15	53.8	64.1	77.8	82.5	87.7	70.5	-0.402	-0.169	0.091	0.171	0.253	-0.042	75.7	71.3	89.8	88.4	97.4	70.5	0.71	0.90	0.87	0.93	0.90	1.00	0.033908	0.359818	-
Rv1283c	oppB	17	59.5	103.3	75.0	105.3	73.0	51.4	-0.363	0.385	-0.052	0.412	-0.088	-0.556	77.8	117.1	98.1	122.1	88.7	72.9	0.76	0.88	0.76	0.86	0.82	0.71	0.047510	0.458493	-
Rv1284	-	4	18.4	3.8	24.1	25.7	56.6	30.6	-0.429	-1.842	-0.117	-0.037	0.966	0.174	55.3	10.1	64.2	61.8	75.5	48.9	0.33	0.38	0.38	0.42	0.75	0.62	0.355584	1.000000	-
Rv1285	cysD	9	66.7	79.0	65.4	67.4	48.2	62.7	0.037	0.265	0.011	0.051	-0.394	-0.047	90.1	88.9	73.6	70.0	54.3	70.5	0.74	0.89	0.89	0.96	0.89	0.89	0.491026	1.000000	-
Rv1286	cysN	27	56.9	39.6	58.7	34.1	37.5	44.1	0.303	-0.168	0.345	-0.359	-0.240	-0.030	82.3	57.9	88.1	55.3	56.2	56.7	0.69	0.69	0.67	0.62	0.67	0.78	0.116727	0.804387	-
Rv1287	-	10	124.2	133.4	193.5	178.4	193.8	171.8	-0.403	-0.304	0.216	0.102	0.219	0.049	133.1	148.2	215.0	223.0	215.4	229.0	0.93	0.90	0.90	0.80	0.90	0.75	0.017159	0.210910	-
Rv1288	-	32	121.2	115.0	117.9	120.8	125.3	129.2	-0.004	-0.077	-0.042	-0.008	0.042	0.084	133.8	124.7	137.2	130.4	133.7	135.5	0.91	0.92	0.86	0.93	0.94	0.95	0.966161	1.000000	-
Rv1289	-	10	106.8	81.9	81.8	102.4	118.3	104.8	0.099	-0.264	-0.265	0.042	0.241	0.074	110.5	81.9	90.9	109.7	118.3	104.8	0.97	1.00	0.90	0.93	1.00	1.00	0.552374	1.000000	-
Rv1290c	-	32	210.8	222.9	204.0	215.7	217.2	201.8	-0.009	0.070	-0.055	0.024	0.034	-0.070	232.6	237.7	221.2	232.7	231.7	211.7	0.91	0.94	0.92	0.93	0.94	0.95	0.998840	1.000000	-
Rv1290A	-	7	19.3	26.8	20.2	28.7	30.6	37.3	-0.402	-0.016	-0.353	0.070	0.146	0.395	36.9	53.6	47.0	67.0	47.6	43.5	0.52	0.50	0.43	0.43	0.64	0.86	0.310405	1.000000	-
Rv1291c	-	2	97.1	201.8	246.3	211.9	171.4	143.9	-0.847	0.171	0.452	0.240	-0.059	-0.304	97.1	201.8	246.3	211.9	171.4	143.9	1.00	1.00	1.00	1.00	1.00	1.00	0.023179	0.265593	-
Rv1292	argS	33	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1293	lysA	24	0.5	1.9	0.6	3.3	3.1	1.7	-0.309	0.005	-0.282	0.271	0.242	-0.032	19.5	11.3	31.0	21.5	18.7	16.5	0.03	0.17	0.02	0.15	0.17	0.10	0.004904	0.077643	-
Rv1294	thrA	20	0.2	0.0	0.0	0.0	0.0	0.0	0.045	-0.009	-0.009	-0.009	-0.009	-0.009	11.6	0.0	0.0	0.0	0.0	0.0	0.02	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1295	thrC	18	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1296	thrB	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1297	rho	17	1.5	0.0	0.4	1.1	0.4	1.5	0.169	-0.219	-0.116	0.070	-0.101	0.152	26.2	0.0	12.6	18.9	14.5	25.0	0.06	0.00	0.03	0.06	0.03	0.06	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1298	rpmE	6	4.0	3.4	2.1	2.3	4.8	0.9	0.188	0.085	-0.157	-0.124	0.310	-0.424	14.5	10.2	12.6	13.6	28.9	10.8	0.28	0.33	0.17	0.17	0.17	0.08	1.000000	1.000000	Has Coefs, but Pvals are NAs (model failure)
Rv1299	prfA	14	0.0	0.0	0.4	0.0	0.0	0.0	-0.021	-0.021	0.103	-0.021	-0.021	-0.021	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.04	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1300	hemK	14	18.5	18.9	10.5	8.7	6.6	19.4	0.325	0.347	-0.277	-0.450	-0.697	0.380	27.8	26.4	22.6	19.3	20.5	27.2	0.67	0.71	0.46	0.45	0.32	0.71	0.003479	0.058565	-
Rv1301	-	9	10.4	11.8	11.1	4.7	5.6	10.6	0.134	0.260	0.202	-0.531	-0.404	0.147	28.1	23.6	25.1	21.3	20.2	17.3	0.37	0.50	0.44	0.22	0.28	0.61	0.233899	1.000000	-
Rv1302	rfe	16	0.0	0.3	0.0	0.0	0.0	0.0	-0.015	0.073	-0.015	-0.015	-0.015	-0.015	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.03	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1303	-	4	124.1	88.9	80.6	70.1	79.9	68.7	0.515	0.056	-0.079	-0.268	-0.090	-0.295	496.6	355.8	322.3	280.3	319.6	274.7	0.25	0.25	0.25	0.25	0.25	0.25	0.485212	1.000000	-
Rv1304	atpB	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1305	atpE	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1306	atpF	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1307	atpH	15	0.0	0.0	0.0	0.0	0.0	0.4	-0.017	-0.017	-0.017	-0.017	-0.017	0.083	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1308	atpA	21	0.0	0.0	0.0	0.0	0.0	0.3	-0.012	-0.012	-0.012	-0.012	-0.012	0.060	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1309	atpG	16	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1310	atpD	18	0.0	0.0	0.0	0.3	0.0	0.3	-0.025	-0.025	-0.025	0.050	-0.025	0.048	0.0	0.0	0.0	14.4	0.0	9.4	0.00	0.00	0.00	0.02	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1311	atpC	1	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1312	-	8	55.6	70.7	66.7	91.7	134.7	55.7	-0.473	-0.153	-0.232	0.200	0.731	-0.472	63.6	80.8	76.2	104.8	153.9	63.6	0.88	0.88	0.88	0.88	0.88	0.88	0.000078	0.002044	-
Rv1313c	-	15	261.5	251.6	232.8	243.5	219.8	226.9	0.125	0.071	-0.039	0.025	-0.120	-0.075	301.7	279.5	268.6	249.1	253.6	234.7	0.87	0.90	0.87	0.98	0.87	0.97	0.712741	1.000000	-
Rv1314c	-	12	106.0	83.7	93.3	98.2	89.1	91.7	0.170	-0.154	-0.005	0.065	-0.068	-0.029	127.2	87.3	111.9	114.0	101.8	95.7	0.83	0.96	0.83	0.86	0.88	0.96	0.800199	1.000000	-
Rv1315	murA	13	0.3	0.0	0.0	0.0	0.0	0.0	0.069	-0.014	-0.014	-0.014	-0.014	-0.014	11.6	0.0	0.0	0.0	0.0	0.0	0.03	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rvnr01	rrs	58	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1316c	ogt	7	120.6	136.6	101.9	124.1	148.4	159.9	-0.124	0.049	-0.357	-0.085	0.164	0.268	168.9	159.4	129.7	124.1	148.4	159.9	0.71	0.86	0.79	1.00	1.00	1.00	0.061771	0.548919	-
Rv1317c	alkA	10	212.8	146.7	180.7	173.7	157.4	166.9	0.291	-0.231	0.061	0.006	-0.133	-0.050	212.8	146.7	180.7	193.0	157.4	166.9	1.00	1.00	1.00	0.90	1.00	1.00	0.227256	1.000000	-
Rv1318c	-	17	208.5	215.2	193.8	214.4	209.7	195.9	0.015	0.060	-0.087	0.055	0.023	-0.073	231.2	215.2	212.6	227.8	237.6	195.9	0.90	1.00	0.91	0.94	0.88	1.00	0.320754	1.000000	-
Rv1319c	-	28	153.3	148.8	145.3	154.8	162.8	165.3	-0.016	-0.058	-0.091	-0.002	0.068	0.090	171.7	160.2	173.1	168.9	175.3	181.5	0.89	0.93	0.84	0.92	0.93	0.91	0.956102	1.000000	-
Rv1320c	-	27	149.9	169.5	149.5	156.2	162.0	160.0	-0.072	0.100	-0.076	-0.015	0.036	0.019	155.7	176.0	164.7	162.2	168.2	172.8	0.96	0.96	0.91	0.96	0.96	0.93	0.809915	1.000000	-
Rv1321	-	9	197.1	174.7	184.9	187.7	191.1	176.6	0.086	-0.083	-0.003	0.018	0.043	-0.068	197.1	174.7	184.9	187.7	191.1	176.6	1.00	1.00	1.00	1.00	1.00	1.00	0.996921	1.000000	-
Rv1322	-	5	214.4	256.4	264.8	228.6	223.6	220.2	-0.128	0.125	0.171	-0.037	-0.068	-0.090	229.7	256.4	294.2	228.6	223.6	275.3	0.93	1.00	0.90	1.00	1.00	0.80	0.698317	1.000000	-
Rv1322A	-	6	89.0	73.9	84.4	89.8	83.1	77.4	0.096	-0.156	0.024	0.109	0.002	-0.093	94.2	73.9	92.1	89.8	83.1	77.4	0.94	1.00	0.92	1.00	1.00	1.00	0.923783	1.000000	-
Rv1323	fadA4	12	158.1	142.6	157.0	145.7	131.2	132.2	0.126	-0.018	0.116	0.012	-0.134	-0.124	183.6	162.9	188.4	159.0	136.9	144.2	0.86	0.88	0.83	0.92	0.96	0.92	0.966139	1.000000	-
Rv1324	-	5	14.3	13.2	9.4	17.9	15.3	20.3	-0.054	-0.142	-0.478	0.190	0.019	0.332	43.0	44.0	31.4	53.7	30.7	33.8	0.33	0.30	0.30	0.33	0.50	0.60	0.902188	1.000000	-
Rv1325c	PE_PGRS24	8	106.9	93.1	99.9	125.6	104.4	88.1	0.051	-0.138	-0.042	0.274	0.019	-0.215	142.6	124.2	133.2	143.5	128.5	117.4	0.75	0.75	0.75	0.88	0.81	0.75	0.994165	1.000000	-
Rv1326c	glgB	41	0.0	0.0	0.0	0.0	0.0	0.1	-0.006	-0.006	-0.006	-0.006	-0.006	0.027	0.0	0.0	0.0	0.0	0.0	9.4	0.00	0.00	0.00	0.00	0.00	0.01	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1327c	glgE	35	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1328	glgP	40	114.8	134.6	116.1	143.3	146.0	137.2	-0.194	0.027	-0.178	0.114	0.141	0.053	132.4	141.7	134.7	162.2	162.3	154.6	0.87	0.95	0.86	0.88	0.90	0.89	0.249967	1.000000	-
Rv1329c	dinG	23	98.2	147.9	104.3	115.8	115.4	110.8	-0.222	0.345	-0.139	0.005	-0.000	-0.057	127.9	189.0	114.3	145.3	132.7	145.6	0.77	0.78	0.91	0.80	0.87	0.76	0.063043	0.554056	-
Rv1330c	-	23	315.7	303.4	328.5	285.9	279.9	275.0	0.082	0.025	0.138	-0.059	-0.089	-0.114	369.2	348.9	408.4	313.1	279.9	316.3	0.86	0.87	0.80	0.91	1.00	0.87	0.168604	0.997024	-
Rv1331	clpS	5	48.3	81.5	79.8	90.1	102.2	99.9	-0.734	-0.035	-0.064	0.102	0.274	0.244	60.4	81.5	88.7	96.5	102.2	99.9	0.80	1.00	0.90	0.93	1.00	1.00	0.263795	1.000000	-
Rv1332	-	6	66.3	74.0	51.0	131.1	112.9	78.9	-0.348	-0.200	-0.694	0.586	0.379	-0.113	66.3	74.0	55.7	131.1	112.9	78.9	1.00	1.00	0.92	1.00	1.00	1.00	0.010071	0.140011	-
Rv1333	-	9	142.5	206.8	121.3	153.7	173.5	170.1	-0.173	0.349	-0.397	-0.068	0.102	0.074	183.2	218.9	145.5	197.6	195.2	191.3	0.78	0.94	0.83	0.78	0.89	0.89	0.645666	1.000000	-
Rv1334	-	10	127.9	212.9	179.1	223.7	185.2	171.7	-0.503	0.210	-0.033	0.279	0.014	-0.093	127.9	212.9	179.1	223.7	185.2	171.7	1.00	1.00	1.00	1.00	1.00	1.00	0.289162	1.000000	-
Rv1335	-	4	100.4	155.2	118.0	140.7	128.9	186.3	-0.443	0.161	-0.220	0.025	-0.098	0.418	109.5	155.2	118.0	153.5	128.9	186.3	0.92	1.00	1.00	0.92	1.00	1.00	0.827970	1.000000	-
Rv1336	cysM	16	140.8	182.1	154.7	224.0	254.7	185.2	-0.421	-0.062	-0.290	0.230	0.411	-0.038	147.0	187.9	165.0	224.0	254.7	185.2	0.96	0.97	0.94	1.00	1.00	1.00	0.036651	0.380832	-
Rv1337	-	12	164.8	216.3	159.8	296.4	314.8	243.0	-0.484	-0.102	-0.527	0.344	0.429	0.062	164.8	216.3	159.8	296.4	314.8	243.0	1.00	1.00	1.00	1.00	1.00	1.00	0.000342	0.007720	-
Rv1338	murI	16	1.0	1.0	7.4	31.6	92.0	0.3	-2.189	-2.191	-1.132	0.426	1.834	-2.350	15.5	10.3	26.4	47.4	101.6	10.8	0.06	0.09	0.28	0.67	0.91	0.03	0.000000	0.000000	-
Rv1339	-	16	1.4	8.5	2.5	58.3	66.6	4.3	-2.151	-1.082	-1.923	1.146	1.323	-1.626	17.3	24.8	20.3	77.7	92.6	22.8	0.08	0.34	0.12	0.75	0.72	0.19	0.000000	0.000000	-
Rv1340	rph	13	54.3	102.2	59.9	134.6	135.2	67.9	-0.716	0.139	-0.586	0.520	0.526	-0.417	70.6	110.8	74.1	145.8	146.5	73.6	0.77	0.92	0.81	0.92	0.92	0.92	0.000317	0.007229	-
Rv1341	-	5	117.5	187.6	139.8	204.6	160.7	151.3	-0.432	0.221	-0.191	0.343	0.004	-0.080	117.5	187.6	139.8	219.3	160.7	151.3	1.00	1.00	1.00	0.93	1.00	1.00	0.397530	1.000000	-
Rv1342c	-	5	11.2	14.2	3.8	3.7	6.2	20.3	0.123	0.369	-0.762	-0.778	-0.417	0.763	21.0	17.8	18.9	13.8	12.3	28.9	0.53	0.80	0.20	0.27	0.50	0.70	0.015164	0.190870	-
Rv1343c	lprD	11	27.5	43.0	19.3	51.2	41.4	42.1	-0.384	0.178	-0.805	0.406	0.129	0.151	43.2	52.6	38.6	89.0	82.8	51.5	0.64	0.82	0.50	0.58	0.50	0.82	0.005614	0.087506	-
Rv1344	-	8	172.0	284.7	138.3	308.7	288.4	252.0	-0.473	0.238	-0.778	0.353	0.256	0.065	172.0	284.7	138.3	308.7	288.4	252.0	1.00	1.00	1.00	1.00	1.00	1.00	0.009010	0.129321	-
Rv1345	fadD33	23	137.3	154.1	154.1	172.0	185.1	168.0	-0.229	-0.068	-0.068	0.086	0.189	0.053	163.3	161.1	172.9	182.6	198.0	179.7	0.84	0.96	0.89	0.94	0.93	0.93	0.624770	1.000000	-
Rv1346	fadE14	13	91.1	94.7	82.9	96.2	84.8	79.0	0.046	0.098	-0.083	0.120	-0.052	-0.148	114.6	111.9	93.7	104.2	110.2	102.7	0.79	0.85	0.88	0.92	0.77	0.77	0.667834	1.000000	-
Rv1347c	-	13	13.9	7.8	9.6	9.4	13.3	9.7	0.275	-0.284	-0.096	-0.118	0.225	-0.087	45.2	20.3	31.2	28.2	31.3	25.2	0.31	0.38	0.31	0.33	0.42	0.38	0.508287	1.000000	-
Rv1348	-	37	5.0	12.0	24.0	173.8	148.0	8.1	-2.741	-1.979	-1.205	1.420	1.195	-2.348	30.8	32.8	45.5	203.1	168.5	22.3	0.16	0.36	0.53	0.86	0.88	0.36	0.000000	0.000000	-
Rv1349	-	17	5.6	19.7	39.2	118.4	92.5	9.1	-2.303	-1.087	-0.247	1.235	0.895	-1.890	28.7	51.5	70.1	134.2	121.0	28.3	0.20	0.38	0.56	0.88	0.76	0.32	0.000000	0.000000	-
Rv1350	fabG	12	31.4	31.9	26.0	30.8	29.6	32.2	0.042	0.062	-0.186	0.019	-0.029	0.076	45.2	36.4	41.7	46.2	41.8	38.7	0.69	0.88	0.62	0.67	0.71	0.83	0.724898	1.000000	-
Rv1351	-	9	150.4	117.2	132.5	104.6	133.2	126.7	0.231	-0.116	0.054	-0.273	0.062	-0.008	176.6	140.6	198.8	157.0	159.9	142.5	0.85	0.83	0.67	0.67	0.83	0.89	0.787091	1.000000	-
Rv1352	-	5	130.0	110.3	116.9	109.1	110.6	174.3	0.052	-0.176	-0.095	-0.190	-0.171	0.462	130.0	137.8	146.1	116.9	110.6	174.3	1.00	0.80	0.80	0.93	1.00	1.00	0.186102	1.000000	-
Rv1353c	-	12	121.8	79.8	106.0	101.7	91.2	91.0	0.291	-0.288	0.100	0.043	-0.107	-0.110	132.8	91.2	110.6	104.6	99.5	104.0	0.92	0.88	0.96	0.97	0.92	0.88	0.744080	1.000000	-
Rv1354c	-	40	68.3	61.2	63.0	67.3	55.2	60.8	0.116	-0.031	0.008	0.097	-0.169	-0.039	89.1	72.0	84.0	82.4	65.9	78.5	0.77	0.85	0.75	0.82	0.84	0.78	0.832026	1.000000	-
Rv1355c	moeY	36	41.1	47.1	44.0	44.7	51.0	41.2	-0.113	0.064	-0.024	-0.005	0.168	-0.110	66.2	72.1	68.9	74.2	73.4	68.9	0.62	0.65	0.64	0.60	0.69	0.60	0.886418	1.000000	-
Rv1356c	-	25	79.9	77.9	78.7	82.4	81.5	75.6	0.010	-0.024	-0.011	0.051	0.036	-0.065	105.2	92.8	103.6	116.6	107.2	90.0	0.76	0.84	0.76	0.71	0.76	0.84	0.828952	1.000000	-
Rv1357c	-	12	101.3	126.3	140.2	103.9	112.4	127.3	-0.217	0.088	0.233	-0.183	-0.074	0.098	114.0	151.6	177.1	124.7	134.9	145.5	0.89	0.83	0.79	0.83	0.83	0.88	0.568825	1.000000	-
Rv1358	-	66	89.6	91.5	89.3	89.0	93.8	92.5	-0.020	0.008	-0.025	-0.030	0.042	0.024	112.3	104.1	115.6	108.7	104.9	106.2	0.80	0.88	0.77	0.82	0.89	0.87	0.714629	1.000000	-
Rv1359	-	17	83.1	90.4	104.7	92.8	98.6	85.7	-0.147	-0.033	0.169	0.004	0.087	-0.105	90.2	105.9	114.8	98.6	104.8	91.1	0.92	0.85	0.91	0.94	0.94	0.94	0.755052	1.000000	-
Rv1360	-	12	238.4	176.3	176.0	191.3	174.8	186.6	0.316	-0.110	-0.112	0.005	-0.121	-0.029	268.2	192.3	211.2	191.3	174.8	194.8	0.89	0.92	0.83	1.00	1.00	0.96	0.180340	1.000000	-
Rv1361c	PPE19	9	22.7	23.4	37.9	29.0	21.3	23.5	-0.177	-0.141	0.456	0.119	-0.252	-0.135	47.1	35.1	85.3	55.9	63.8	52.8	0.48	0.67	0.44	0.52	0.33	0.44	0.325018	1.000000	-
Rv1362c	-	13	96.0	112.6	87.6	110.4	111.6	120.5	-0.141	0.078	-0.268	0.050	0.065	0.171	113.5	133.1	103.5	123.0	126.1	136.2	0.85	0.85	0.85	0.90	0.88	0.88	0.907613	1.000000	-
Rv1363c	-	6	132.5	120.9	156.2	118.8	120.3	129.6	0.029	-0.097	0.259	-0.122	-0.105	-0.001	140.3	120.9	156.2	118.8	131.2	129.6	0.94	1.00	1.00	1.00	0.92	1.00	0.847137	1.000000	-
Rv1364c	-	31	115.9	154.2	127.6	167.5	158.6	113.8	-0.258	0.139	-0.125	0.255	0.178	-0.284	122.5	156.7	136.3	175.1	163.8	117.6	0.95	0.98	0.94	0.96	0.97	0.97	0.114033	0.795442	-
Rv1365c	rsfA	5	152.5	176.2	158.5	207.4	132.6	177.0	-0.130	0.072	-0.076	0.301	-0.325	0.079	152.5	176.2	158.5	207.4	132.6	177.0	1.00	1.00	1.00	1.00	1.00	1.00	0.272426	1.000000	-
Rv1366	-	17	34.1	32.7	41.0	33.8	32.4	27.5	0.019	-0.034	0.254	0.008	-0.043	-0.249	64.4	46.3	55.7	52.2	46.0	32.2	0.53	0.71	0.74	0.65	0.71	0.85	0.165402	0.996469	-
Rv1367c	-	13	140.5	133.6	143.2	119.2	130.3	141.9	0.057	-0.012	0.085	-0.171	-0.047	0.072	152.2	133.6	143.2	129.1	135.6	147.6	0.92	1.00	1.00	0.92	0.96	0.96	0.696398	1.000000	-
Rv1368	lprF	7	92.2	90.0	80.9	107.6	91.7	108.6	-0.043	-0.076	-0.222	0.169	-0.051	0.181	129.1	105.0	94.3	125.5	116.6	116.9	0.71	0.86	0.86	0.86	0.79	0.93	0.930342	1.000000	-
Rv1369c	-	21	288.2	299.4	310.6	314.3	283.7	285.8	-0.043	0.011	0.064	0.080	-0.065	-0.055	378.2	359.3	407.7	412.5	350.4	333.4	0.76	0.83	0.76	0.76	0.81	0.86	0.989822	1.000000	-
Rv1370c	-	4	221.7	231.8	231.1	236.8	252.3	181.5	-0.026	0.037	0.032	0.067	0.157	-0.308	221.7	231.8	231.1	236.8	252.3	181.5	1.00	1.00	1.00	1.00	1.00	1.00	0.962949	1.000000	-
Rv1371	-	28	30.7	31.3	34.8	30.1	23.3	32.2	0.012	0.035	0.170	-0.013	-0.322	0.072	43.0	44.9	48.8	38.9	38.4	40.1	0.71	0.70	0.71	0.77	0.61	0.80	0.416848	1.000000	-
Rv1372	-	18	52.1	67.8	56.2	53.6	47.8	56.4	-0.086	0.263	0.012	-0.048	-0.201	0.017	70.4	78.7	67.4	72.4	53.7	75.2	0.74	0.86	0.83	0.74	0.89	0.75	0.435183	1.000000	-
Rv1373	-	17	137.7	164.7	154.8	145.6	148.0	137.0	-0.101	0.150	0.063	-0.022	-0.000	-0.107	146.3	164.7	154.8	145.6	148.0	137.0	0.94	1.00	1.00	1.00	1.00	1.00	0.456218	1.000000	-
Rv1374c	-	12	210.1	219.6	214.0	207.9	232.2	236.2	-0.065	-0.003	-0.039	-0.080	0.076	0.100	216.1	219.6	214.0	207.9	232.2	236.2	0.97	1.00	1.00	1.00	1.00	1.00	0.873559	1.000000	-
Rv1375	-	20	167.7	176.9	176.0	172.2	177.9	175.9	-0.055	0.020	0.012	-0.018	0.028	0.011	183.0	196.5	195.5	198.7	187.3	190.1	0.92	0.90	0.90	0.87	0.95	0.93	0.979992	1.000000	-
Rv1376	-	14	174.2	175.2	173.3	171.5	154.5	178.7	0.024	0.032	0.017	0.002	-0.144	0.060	187.6	196.3	186.6	180.1	173.0	192.4	0.93	0.89	0.93	0.95	0.89	0.93	0.993370	1.000000	-
Rv1377c	-	10	95.1	111.7	115.7	110.5	121.5	111.9	-0.213	0.007	0.057	-0.007	0.124	0.011	101.9	148.9	128.6	118.4	143.0	124.4	0.93	0.75	0.90	0.93	0.85	0.90	0.291857	1.000000	-
Rv1378c	-	19	158.0	140.0	154.3	142.3	158.3	150.7	0.067	-0.102	0.034	-0.079	0.070	0.001	180.1	197.1	172.5	184.3	200.5	173.6	0.88	0.71	0.89	0.77	0.79	0.87	0.328258	1.000000	-
Rv1379	pyrR	7	39.1	37.0	44.2	26.7	38.9	22.0	0.153	0.083	0.312	-0.324	0.148	-0.554	136.8	129.5	154.8	93.4	181.7	61.6	0.29	0.29	0.29	0.29	0.21	0.36	0.902935	1.000000	-
Rv1380	pyrB	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1381	pyrC	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1382	-	6	5.3	3.4	3.1	0.0	4.2	1.7	0.373	0.084	0.033	-0.672	0.209	-0.253	16.0	13.8	18.9	0.0	12.6	10.1	0.33	0.25	0.17	0.00	0.33	0.17	0.139131	0.911551	-
Rv1383	carA	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1384	carB	42	0.0	0.1	0.0	0.2	0.0	0.0	-0.016	0.019	-0.016	0.045	-0.016	-0.016	0.0	10.4	0.0	13.7	0.0	0.0	0.00	0.01	0.00	0.02	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1385	pyrF	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1386	PE15	5	20.1	30.7	23.2	59.6	52.9	38.5	-0.760	-0.252	-0.593	0.605	0.446	0.034	33.5	30.7	33.1	59.6	52.9	38.5	0.60	1.00	0.70	1.00	1.00	1.00	0.000132	0.003317	-
Rv1387	PPE20	24	87.1	129.1	105.8	231.9	230.3	117.6	-0.754	-0.212	-0.487	0.609	0.600	-0.341	98.0	134.7	123.9	231.9	230.3	120.1	0.89	0.96	0.85	1.00	1.00	0.98	0.000000	0.000000	-
Rv1388	mihF	5	36.6	29.7	26.3	59.8	43.1	37.1	-0.072	-0.336	-0.485	0.566	0.137	-0.055	55.0	37.1	32.8	59.8	43.1	46.4	0.67	0.80	0.80	1.00	1.00	0.80	0.088098	0.694601	-
Rv1389	gmk	6	0.0	0.0	1.0	0.0	0.0	0.0	-0.050	-0.050	0.225	-0.050	-0.050	-0.050	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.08	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1390	rpoZ	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1391	dfp	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1392	metK	17	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1393c	-	24	165.0	154.5	153.3	160.8	170.5	161.3	0.035	-0.056	-0.068	-0.001	0.081	0.003	180.0	168.6	179.5	178.1	186.0	180.0	0.92	0.92	0.85	0.90	0.92	0.90	0.995044	1.000000	-
Rv1394c	cyp132	18	99.2	116.9	91.8	115.9	104.8	115.6	-0.109	0.118	-0.215	0.105	-0.033	0.102	116.4	123.8	100.1	122.7	117.9	126.1	0.85	0.94	0.92	0.94	0.89	0.92	0.806697	1.000000	-
Rv1395	-	13	116.3	119.4	116.1	129.7	121.0	132.2	-0.072	-0.035	-0.073	0.080	-0.017	0.106	151.1	147.8	125.8	168.6	149.8	156.2	0.77	0.81	0.92	0.77	0.81	0.85	0.768001	1.000000	-
Rv1396c	PE_PGRS25	12	155.8	143.3	180.0	166.2	167.4	147.5	-0.038	-0.154	0.165	0.053	0.063	-0.114	207.7	163.8	216.0	187.0	191.3	160.9	0.75	0.88	0.83	0.89	0.88	0.92	0.940498	1.000000	-
Rv1397c	-	6	98.3	108.8	89.2	117.6	132.7	128.8	-0.186	-0.047	-0.320	0.061	0.228	0.186	118.0	163.2	107.0	141.2	159.3	154.5	0.83	0.67	0.83	0.83	0.83	0.83	0.826095	1.000000	-
Rv1398c	-	3	187.6	261.0	201.3	235.4	256.1	229.6	-0.278	0.188	-0.179	0.042	0.161	0.007	187.6	261.0	201.3	235.4	256.1	229.6	1.00	1.00	1.00	1.00	1.00	1.00	0.244961	1.000000	-
Rv1399c	lipH	14	125.4	142.3	153.1	158.2	131.5	140.9	-0.172	0.004	0.106	0.152	-0.106	-0.010	150.5	153.3	164.8	179.6	147.3	146.1	0.83	0.93	0.93	0.88	0.89	0.96	0.902161	1.000000	-
Rv1400c	lipI	15	90.3	69.0	84.6	73.5	79.2	63.9	0.222	-0.144	0.132	-0.059	0.043	-0.247	109.9	86.2	126.8	114.0	91.4	79.9	0.82	0.80	0.67	0.64	0.87	0.80	0.316998	1.000000	-
Rv1401	-	5	27.2	18.2	32.4	21.3	26.5	29.4	0.062	-0.409	0.279	-0.230	0.031	0.158	34.0	22.8	40.6	26.7	29.5	32.7	0.80	0.80	0.80	0.80	0.90	0.90	0.894747	1.000000	-
Rv1402	priA	22	4.4	7.9	3.0	2.6	5.3	3.1	-0.001	0.456	-0.229	-0.296	0.135	-0.210	26.2	21.6	18.8	21.8	19.4	17.1	0.17	0.36	0.16	0.12	0.27	0.18	0.236096	1.000000	-
Rv1403c	-	13	69.8	67.5	40.9	75.8	89.3	68.3	0.024	-0.022	-0.680	0.134	0.358	-0.006	82.5	73.1	56.0	86.9	92.9	68.3	0.85	0.92	0.73	0.87	0.96	1.00	0.081453	0.663356	-
Rv1404	-	5	20.9	24.3	25.6	26.3	35.9	44.9	-0.422	-0.242	-0.180	-0.147	0.241	0.526	44.7	24.3	51.2	39.4	59.9	49.8	0.47	1.00	0.50	0.67	0.60	0.90	0.013838	0.179260	-
Rv1405c	-	10	187.5	160.9	165.5	162.1	171.8	159.3	0.155	-0.059	-0.020	-0.049	0.033	-0.073	216.3	169.4	165.5	167.7	180.8	159.3	0.87	0.95	1.00	0.97	0.95	1.00	0.717737	1.000000	-
Rv1406	fmt	9	9.5	11.9	2.8	5.8	9.0	6.7	0.200	0.424	-0.693	-0.228	0.154	-0.112	23.3	21.4	16.8	17.3	20.3	15.0	0.41	0.56	0.17	0.33	0.44	0.44	0.298536	1.000000	-
Rv1407	fmu	19	189.9	206.0	223.8	208.2	222.3	217.7	-0.150	-0.036	0.081	-0.021	0.071	0.042	225.5	230.2	242.9	237.3	264.0	250.7	0.84	0.89	0.92	0.88	0.84	0.87	0.921701	1.000000	-
Rv1408	rpe	11	23.2	31.4	20.5	20.8	29.7	20.7	-0.058	0.310	-0.206	-0.187	0.238	-0.192	40.4	34.6	37.6	34.4	40.8	26.8	0.58	0.91	0.55	0.61	0.73	0.77	0.249685	1.000000	-
Rv1409	ribG	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1410c	-	27	39.8	80.4	64.4	71.4	108.9	57.7	-0.751	0.179	-0.121	0.018	0.595	-0.267	65.9	103.4	91.5	101.5	115.3	67.8	0.60	0.78	0.70	0.70	0.94	0.85	0.000015	0.000446	-
Rv1411c	lprG	8	7.5	20.8	11.8	23.3	36.7	16.0	-0.963	0.085	-0.540	0.218	0.775	-0.211	22.5	30.3	23.5	31.1	48.9	25.7	0.33	0.69	0.50	0.75	0.75	0.62	0.004133	0.067038	-
Rv1412	ribC	5	0.0	1.0	0.0	0.0	1.5	0.0	-0.113	0.150	-0.113	-0.113	0.254	-0.113	0.0	10.0	0.0	0.0	14.5	0.0	0.00	0.10	0.00	0.00	0.10	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1413	-	4	360.0	310.8	335.0	384.8	339.1	313.7	0.079	-0.130	-0.023	0.174	-0.006	-0.117	360.0	310.8	335.0	384.8	339.1	313.7	1.00	1.00	1.00	1.00	1.00	1.00	0.988441	1.000000	-
Rv1414	-	3	222.8	313.5	213.1	212.0	195.8	206.3	-0.028	0.456	-0.090	-0.098	-0.210	-0.137	222.8	313.5	213.1	212.0	195.8	206.3	1.00	1.00	1.00	1.00	1.00	1.00	0.785452	1.000000	-
Rv1415	ribA2	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1416	ribH	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1417	-	7	84.1	70.1	105.3	138.5	109.7	81.9	-0.213	-0.460	0.095	0.475	0.152	-0.249	160.6	140.1	210.5	193.9	153.6	114.6	0.52	0.50	0.50	0.71	0.71	0.71	0.876783	1.000000	-
Rv1418	lprH	13	101.3	101.9	103.0	104.8	96.6	108.2	-0.018	-0.010	0.005	0.029	-0.083	0.073	131.7	132.4	133.9	136.3	125.6	134.0	0.77	0.77	0.77	0.77	0.77	0.81	0.999983	1.000000	-
Rv1419	-	3	20.1	34.1	44.9	34.7	30.4	37.1	-0.621	0.019	0.373	0.041	-0.123	0.128	25.8	40.9	44.9	34.7	30.4	37.1	0.78	0.83	1.00	1.00	1.00	1.00	0.470044	1.000000	-
Rv1420	uvrC	25	75.9	72.8	68.4	77.2	81.7	75.2	0.012	-0.043	-0.127	0.035	0.112	-0.001	96.4	82.8	79.5	86.4	86.9	87.4	0.79	0.88	0.86	0.89	0.94	0.86	0.747425	1.000000	-
Rv1421	-	19	88.8	88.1	68.6	97.8	88.7	89.7	0.029	0.018	-0.321	0.161	0.027	0.042	110.1	101.5	84.1	113.8	96.3	103.3	0.81	0.87	0.82	0.86	0.92	0.87	0.843279	1.000000	-
Rv1422	-	9	161.5	191.7	243.0	197.9	206.7	157.4	-0.250	-0.010	0.325	0.035	0.096	-0.286	181.7	246.4	291.6	222.7	232.5	202.3	0.89	0.78	0.83	0.89	0.89	0.78	0.830512	1.000000	-
Rv1423	whiA	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1424c	-	17	55.2	68.2	55.1	61.4	75.8	61.9	-0.174	0.107	-0.177	-0.033	0.250	-0.022	68.7	77.2	66.9	74.5	83.1	70.2	0.80	0.88	0.82	0.82	0.91	0.88	0.905277	1.000000	-
Rv1425	-	17	151.3	163.2	149.8	158.3	155.2	144.1	-0.022	0.084	-0.036	0.042	0.014	-0.089	160.7	179.0	169.8	158.3	164.9	163.4	0.94	0.91	0.88	1.00	0.94	0.88	0.386301	1.000000	-
Rv1426c	lipO	26	97.2	78.7	63.7	75.3	83.3	79.5	0.272	-0.015	-0.301	-0.076	0.062	-0.002	122.3	102.4	75.3	96.3	103.2	94.0	0.79	0.77	0.85	0.78	0.81	0.85	0.301346	1.000000	-
Rv1427c	fadD12	16	45.9	58.6	46.7	54.4	45.8	44.7	-0.095	0.226	-0.071	0.129	-0.097	-0.130	62.9	72.1	68.0	74.7	56.4	55.0	0.73	0.81	0.69	0.73	0.81	0.81	0.939785	1.000000	-
Rv1428c	-	16	61.7	88.6	79.0	73.7	82.6	76.9	-0.299	0.190	0.033	-0.060	0.093	-0.004	80.1	105.0	109.8	101.1	94.3	91.1	0.77	0.84	0.72	0.73	0.88	0.84	0.838423	1.000000	-
Rv1429	-	21	122.2	121.6	129.2	130.2	117.1	113.7	-0.002	-0.008	0.075	0.087	-0.060	-0.101	145.2	159.6	159.5	164.1	149.1	132.6	0.84	0.76	0.81	0.79	0.79	0.86	0.938393	1.000000	-
Rv1430	PE16	36	81.1	71.1	78.0	83.0	83.4	81.8	0.023	-0.154	-0.030	0.054	0.061	0.034	105.5	82.6	95.2	100.7	96.8	92.0	0.77	0.86	0.82	0.82	0.86	0.89	0.885569	1.000000	-
Rv1431	-	25	41.9	33.5	53.1	24.3	31.5	33.6	0.183	-0.102	0.492	-0.497	-0.180	-0.097	59.3	47.9	88.5	37.9	42.5	43.1	0.71	0.70	0.60	0.64	0.74	0.78	0.003364	0.057354	-
Rv1432	-	15	160.8	59.7	175.8	6.3	14.4	42.1	1.024	-0.334	1.149	-2.846	-2.069	-0.791	176.5	71.6	219.8	25.9	22.8	50.5	0.91	0.83	0.80	0.24	0.63	0.83	0.000000	0.000000	-
Rv1433	-	16	182.9	195.7	191.4	195.4	157.7	175.5	-0.001	0.093	0.062	0.091	-0.209	-0.059	195.1	195.7	211.2	208.4	168.2	187.2	0.94	1.00	0.91	0.94	0.94	0.94	0.892738	1.000000	-
Rv1434	-	1	128.3	143.2	118.7	222.0	168.7	114.3	-0.210	-0.057	-0.318	0.558	0.172	-0.370	128.3	143.2	118.7	222.0	168.7	114.3	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1435c	-	16	156.1	137.2	163.0	127.1	140.0	133.5	0.125	-0.056	0.185	-0.162	-0.028	-0.094	220.4	199.6	226.8	179.4	186.7	194.2	0.71	0.69	0.72	0.71	0.75	0.69	0.998206	1.000000	-
Rv1436	gap	12	4.4	2.1	1.0	0.0	0.0	0.0	0.584	0.188	-0.050	-0.325	-0.325	-0.325	17.5	10.2	12.6	0.0	0.0	0.0	0.25	0.21	0.08	0.00	0.00	0.00	0.000022	0.000652	-
Rv1437	pgk	14	3.4	2.5	1.8	0.7	0.0	0.7	0.363	0.209	0.060	-0.196	-0.384	-0.189	23.7	11.8	16.8	14.6	0.0	10.1	0.14	0.21	0.11	0.05	0.00	0.07	0.070287	0.600525	-
Rv1438	tpiA	14	0.0	0.4	0.0	0.0	0.0	0.0	-0.018	0.086	-0.018	-0.018	-0.018	-0.018	0.0	10.4	0.0	0.0	0.0	0.0	0.00	0.04	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1439c	-	7	76.2	95.9	85.3	87.1	72.5	73.7	-0.097	0.218	0.057	0.085	-0.164	-0.140	99.9	95.9	91.9	87.1	72.5	79.4	0.76	1.00	0.93	1.00	1.00	0.93	0.256988	1.000000	-
Rv1440	secG	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1441c	PE_PGRS26	17	153.3	191.7	161.6	165.2	154.5	140.0	-0.069	0.244	0.005	0.036	-0.058	-0.196	177.7	203.7	203.5	205.5	169.4	170.0	0.86	0.94	0.79	0.80	0.91	0.82	0.779863	1.000000	-
Rv1442	bisC	35	159.5	152.5	169.0	166.2	153.7	157.0	-0.001	-0.064	0.080	0.057	-0.053	-0.024	190.3	164.2	200.5	187.7	168.1	171.7	0.84	0.93	0.84	0.89	0.91	0.91	0.938092	1.000000	-
Rv1443c	-	1	167.9	189.4	75.1	204.3	129.9	164.0	0.111	0.280	-0.998	0.387	-0.247	0.077	167.9	189.4	75.1	204.3	129.9	164.0	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1444c	-	3	94.4	49.5	74.9	74.6	40.9	65.1	0.474	-0.394	0.159	0.153	-0.640	-0.030	94.4	49.5	74.9	74.6	40.9	65.1	1.00	1.00	1.00	1.00	1.00	1.00	0.156353	0.967209	-
Rv1445c	devB	7	55.6	82.0	51.0	57.1	51.6	46.6	-0.040	0.481	-0.153	-0.006	-0.140	-0.272	83.4	114.8	79.4	74.9	80.2	72.5	0.67	0.71	0.64	0.76	0.64	0.64	0.969816	1.000000	-
Rv1446c	opcA	13	69.4	46.2	87.5	35.6	60.0	62.1	0.192	-0.348	0.506	-0.682	-0.002	0.043	96.7	66.7	103.4	77.1	82.1	73.4	0.72	0.69	0.85	0.46	0.73	0.85	0.034649	0.365475	-
Rv1447c	zwf2	15	85.8	88.4	100.2	83.4	87.5	76.1	-0.018	0.024	0.195	-0.057	0.009	-0.180	110.3	94.8	130.7	96.2	97.2	81.5	0.78	0.93	0.77	0.87	0.90	0.93	0.631292	1.000000	-
Rv1448c	tal	11	91.2	102.3	104.9	99.7	80.8	82.5	-0.035	0.123	0.157	0.087	-0.200	-0.172	167.2	173.2	164.8	143.1	104.6	113.4	0.55	0.59	0.64	0.70	0.77	0.73	0.883570	1.000000	-
Rv1449c	tkt	20	0.4	0.0	0.0	0.0	0.0	0.0	0.089	-0.019	-0.019	-0.019	-0.019	-0.019	23.3	0.0	0.0	0.0	0.0	0.0	0.02	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1450c	PE_PGRS27	28	102.6	103.8	117.0	109.8	114.8	95.8	-0.061	-0.046	0.119	0.032	0.093	-0.156	143.6	145.3	148.9	173.9	139.7	119.2	0.71	0.71	0.79	0.63	0.82	0.80	0.347741	1.000000	-
Rv1451	ctaB	15	4.8	4.4	5.0	1.5	0.8	3.0	0.248	0.190	0.280	-0.340	-0.511	-0.050	21.5	16.5	21.5	22.7	11.8	11.1	0.22	0.27	0.23	0.07	0.07	0.27	0.006722	0.100836	-
Rv1452c	PE_PGRS28	14	239.1	226.0	202.3	220.5	243.9	203.8	0.101	0.021	-0.134	-0.014	0.129	-0.125	304.3	287.6	246.3	257.2	310.5	211.3	0.79	0.79	0.82	0.86	0.79	0.96	0.608543	1.000000	-
Rv1453	-	10	236.7	237.6	218.5	222.8	223.3	234.6	0.047	0.053	-0.066	-0.038	-0.035	0.035	253.6	250.1	242.8	230.4	248.1	276.0	0.93	0.95	0.90	0.97	0.90	0.85	0.956369	1.000000	-
Rv1454c	qor	15	270.2	266.1	265.2	258.1	289.4	252.7	0.017	-0.005	-0.009	-0.048	0.115	-0.078	270.2	295.7	274.4	258.1	299.4	252.7	1.00	0.90	0.97	1.00	0.97	1.00	0.335872	1.000000	-
Rv1455	-	12	225.6	216.2	201.4	227.0	220.5	214.2	0.052	-0.009	-0.108	0.060	0.020	-0.021	253.8	235.8	254.4	240.3	230.1	244.8	0.89	0.92	0.79	0.94	0.96	0.88	0.940971	1.000000	-
Rv1456c	-	13	5.7	15.7	7.7	2.1	2.5	4.4	-0.084	0.865	0.164	-0.672	-0.597	-0.277	22.3	29.1	22.3	20.7	10.8	18.9	0.26	0.54	0.35	0.10	0.23	0.23	0.000089	0.002303	-
Rv1457c	-	8	56.5	75.3	65.6	70.9	73.5	61.5	-0.231	0.153	-0.033	0.072	0.120	-0.119	61.7	75.3	95.4	77.3	73.5	70.3	0.92	1.00	0.69	0.92	1.00	0.88	0.169904	0.999880	-
Rv1458c	-	13	199.6	208.5	160.2	220.8	182.2	211.8	0.017	0.078	-0.291	0.159	-0.111	0.101	228.9	208.5	173.6	232.7	197.4	229.4	0.87	1.00	0.92	0.95	0.92	0.92	0.613505	1.000000	-
Rv1459c	-	23	25.4	33.2	27.5	33.6	32.6	33.1	-0.238	0.091	-0.144	0.105	0.065	0.085	146.3	191.2	180.7	193.4	187.2	190.3	0.17	0.17	0.15	0.17	0.17	0.17	0.999581	1.000000	-
Rv1460	-	7	115.2	52.4	61.7	33.5	42.0	47.0	0.917	-0.149	0.068	-0.724	-0.437	-0.292	142.3	61.1	78.5	88.0	117.6	65.8	0.81	0.86	0.79	0.38	0.36	0.71	0.001443	0.027822	-
Rv1461	-	56	0.0	0.0	0.0	0.0	0.0	0.1	-0.004	-0.004	-0.004	-0.004	-0.004	0.020	0.0	0.0	0.0	0.0	0.0	9.4	0.00	0.00	0.00	0.00	0.00	0.01	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1462	-	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1463	-	10	0.0	0.0	0.0	0.0	0.0	0.5	-0.026	-0.026	-0.026	-0.026	-0.026	0.122	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1464	csd	15	3.5	0.7	4.6	0.3	0.0	0.7	0.358	-0.229	0.536	-0.320	-0.409	-0.215	22.6	10.0	27.8	14.4	0.0	10.8	0.16	0.07	0.17	0.02	0.00	0.07	0.019488	0.231441	-
Rv1465	-	7	19.9	16.7	19.7	12.0	19.3	15.9	0.165	-0.038	0.148	-0.390	0.129	-0.089	38.1	46.7	39.3	83.9	90.3	111.5	0.52	0.36	0.50	0.14	0.21	0.14	0.006792	0.101502	-
Rv1466	-	1	82.6	116.7	40.7	23.3	56.0	60.8	0.358	0.833	-0.579	-1.274	-0.165	-0.055	82.6	116.7	40.7	23.3	56.0	60.8	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1467c	fadE15	25	147.4	165.5	146.6	135.2	164.4	157.9	-0.051	0.111	-0.058	-0.171	0.102	0.046	151.4	165.5	152.7	137.0	164.4	157.9	0.97	1.00	0.96	0.99	1.00	1.00	0.472438	1.000000	-
Rv1468c	PE_PGRS29	9	133.2	126.3	120.5	133.7	176.0	120.4	-0.019	-0.093	-0.158	-0.014	0.370	-0.159	171.3	142.1	144.6	164.0	176.0	166.7	0.78	0.89	0.83	0.81	1.00	0.72	0.437527	1.000000	-
Rv1469	ctpD	18	126.4	143.4	119.2	121.0	127.8	132.5	-0.022	0.154	-0.103	-0.082	-0.007	0.044	155.1	172.1	153.2	151.9	153.3	149.1	0.81	0.83	0.78	0.80	0.83	0.89	0.996489	1.000000	-
Rv1470	trxA	5	120.2	144.5	120.8	130.5	111.4	137.8	-0.082	0.174	-0.075	0.032	-0.188	0.108	150.3	144.5	134.2	130.5	111.4	137.8	0.80	1.00	0.90	1.00	1.00	1.00	0.598579	1.000000	-
Rv1471	trxB1	2	304.8	386.8	414.3	320.9	219.7	258.6	-0.058	0.281	0.379	0.015	-0.521	-0.291	304.8	386.8	414.3	320.9	219.7	258.6	1.00	1.00	1.00	1.00	1.00	1.00	0.153923	0.958115	-
Rv1472	echA12	14	149.5	155.9	167.3	176.5	167.3	150.4	-0.105	-0.046	0.052	0.127	0.052	-0.096	153.1	155.9	173.5	176.5	167.3	150.4	0.98	1.00	0.96	1.00	1.00	1.00	0.907614	1.000000	-
Rv1473	-	22	111.8	125.9	113.3	111.7	136.2	116.5	-0.089	0.076	-0.070	-0.091	0.184	-0.032	123.0	138.5	127.8	134.0	149.8	138.6	0.91	0.91	0.89	0.83	0.91	0.84	0.647548	1.000000	-
Rv1473A	-	4	235.3	266.7	215.9	289.3	248.8	318.5	-0.154	0.023	-0.276	0.138	-0.076	0.275	235.3	266.7	215.9	289.3	248.8	318.5	1.00	1.00	1.00	1.00	1.00	1.00	0.814313	1.000000	-
Rv1474c	-	8	208.6	196.5	239.3	132.3	134.3	163.8	0.214	0.130	0.408	-0.423	-0.403	-0.126	278.2	224.5	273.5	158.8	179.1	187.1	0.75	0.88	0.88	0.83	0.75	0.88	0.849874	1.000000	-
Rv1475c	acn	47	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1476	-	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1477	-	21	5.4	7.7	5.2	15.6	22.3	8.7	-0.600	-0.313	-0.635	0.380	0.787	-0.210	34.3	32.5	36.3	51.7	52.1	36.5	0.16	0.24	0.14	0.30	0.43	0.24	0.079525	0.655513	-
Rv1478	-	7	207.3	199.1	218.8	171.0	192.4	185.0	0.082	0.025	0.158	-0.189	-0.023	-0.078	229.1	199.1	218.8	199.5	207.2	215.8	0.90	1.00	1.00	0.86	0.93	0.86	0.756258	1.000000	-
Rv1479	moxR1	13	0.0	0.0	0.0	0.0	0.3	0.0	-0.017	-0.017	-0.017	-0.017	0.080	-0.017	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.04	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1480	-	5	0.0	0.0	0.0	0.0	0.0	10.1	-0.420	-0.420	-0.420	-0.420	-0.420	1.178	0.0	0.0	0.0	0.0	0.0	50.7	0.00	0.00	0.00	0.00	0.00	0.20	0.060373	0.538899	-
Rv1481	-	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1482c	-	14	219.6	239.5	211.0	228.4	215.7	197.1	0.007	0.129	-0.049	0.062	-0.018	-0.146	242.7	248.4	236.3	246.0	232.3	197.1	0.90	0.96	0.89	0.93	0.93	1.00	0.877362	1.000000	-
Rv1483	fabG1	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1484	inhA	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1485	hemH	24	0.8	0.0	1.3	68.9	83.5	9.9	-2.484	-2.695	-2.364	1.190	1.451	-1.125	18.9	0.0	31.0	93.6	95.5	27.8	0.04	0.00	0.04	0.74	0.88	0.35	0.000000	0.000000	-
Rv1486c	-	7	249.2	263.2	273.9	257.7	275.7	272.8	-0.089	-0.012	0.044	-0.042	0.054	0.039	249.2	263.2	273.9	257.7	275.7	272.8	1.00	1.00	1.00	1.00	1.00	1.00	0.998824	1.000000	-
Rv1487	-	3	221.8	151.8	115.4	186.3	92.4	128.7	0.555	0.022	-0.358	0.309	-0.665	-0.208	221.8	151.8	115.4	186.3	92.4	128.7	1.00	1.00	1.00	1.00	1.00	1.00	0.110942	0.784724	-
Rv1488	-	14	309.9	289.2	259.1	247.4	242.9	289.8	0.180	0.082	-0.074	-0.140	-0.166	0.084	325.4	311.4	290.2	266.4	261.6	312.0	0.95	0.93	0.89	0.93	0.93	0.93	0.984669	1.000000	-
Rv1489	-	6	284.1	290.0	305.4	299.5	299.5	291.2	-0.053	-0.024	0.050	0.022	0.021	-0.018	284.1	290.0	305.4	299.5	299.5	291.2	1.00	1.00	1.00	1.00	1.00	1.00	0.999932	1.000000	-
Rv1489A	-	4	249.0	241.0	205.9	235.5	255.5	190.2	0.115	0.069	-0.153	0.037	0.151	-0.265	249.0	241.0	205.9	235.5	255.5	190.2	1.00	1.00	1.00	1.00	1.00	1.00	0.939798	1.000000	-
Rv1490	-	37	30.8	33.1	31.5	26.0	38.9	33.5	-0.059	0.029	-0.032	-0.264	0.235	0.046	55.1	55.6	52.9	40.1	47.9	43.5	0.56	0.59	0.59	0.65	0.81	0.77	0.022982	0.264257	-
Rv1491c	-	14	154.7	147.7	138.0	158.2	157.2	161.4	0.017	-0.048	-0.142	0.048	0.039	0.076	196.9	172.3	175.7	195.4	191.4	188.4	0.79	0.86	0.79	0.81	0.82	0.86	0.999639	1.000000	-
Rv1492	mutA	13	175.2	193.2	231.2	211.0	197.1	176.3	-0.167	-0.030	0.223	0.094	-0.002	-0.158	195.2	209.3	250.5	257.1	222.8	218.3	0.90	0.92	0.92	0.82	0.88	0.81	0.621273	1.000000	-
Rv1493	mutB	28	175.2	175.7	172.4	172.2	164.9	163.6	0.036	0.041	0.014	0.013	-0.048	-0.059	241.2	228.9	219.4	212.8	196.4	190.8	0.73	0.77	0.79	0.81	0.84	0.86	0.963225	1.000000	-
Rv1494	-	8	181.4	143.1	180.4	178.3	168.6	145.6	0.122	-0.210	0.115	0.098	0.020	-0.185	256.0	163.5	222.0	237.7	245.3	194.1	0.71	0.88	0.81	0.75	0.69	0.75	0.885775	1.000000	-
Rv1495	-	5	162.5	125.7	171.7	127.7	129.7	187.3	0.105	-0.253	0.182	-0.231	-0.209	0.304	162.5	139.7	171.7	159.7	129.7	187.3	1.00	0.90	1.00	0.80	1.00	1.00	0.227156	1.000000	-
Rv1496	-	3	247.8	234.2	229.9	219.7	178.9	217.7	0.159	0.079	0.054	-0.011	-0.300	-0.023	247.8	234.2	229.9	219.7	178.9	217.7	1.00	1.00	1.00	1.00	1.00	1.00	0.887581	1.000000	-
Rv1497	lipL	14	274.8	234.0	214.0	200.1	229.2	236.3	0.243	0.016	-0.110	-0.205	-0.013	0.030	339.4	284.8	260.6	254.6	279.0	287.7	0.81	0.82	0.82	0.79	0.82	0.82	0.999221	1.000000	-
Rv1498c	-	16	81.8	99.1	78.2	82.4	88.2	120.5	-0.156	0.106	-0.217	-0.146	-0.053	0.376	100.6	105.7	83.4	89.9	94.1	128.5	0.81	0.94	0.94	0.92	0.94	0.94	0.102240	0.747564	-
Rv1498A	-	3	218.1	266.7	196.1	301.6	245.4	281.7	-0.202	0.083	-0.352	0.257	-0.035	0.160	218.1	266.7	196.1	301.6	245.4	281.7	1.00	1.00	1.00	1.00	1.00	1.00	0.124928	0.842014	-
Rv1499	-	4	142.3	120.5	154.0	108.0	134.4	123.4	0.121	-0.110	0.231	-0.262	0.042	-0.077	142.3	120.5	154.0	108.0	134.4	123.4	1.00	1.00	1.00	1.00	1.00	1.00	0.810574	1.000000	-
Rv1500	-	32	21.2	27.9	23.7	24.7	22.8	28.1	-0.182	0.146	-0.053	-0.002	-0.096	0.156	53.6	48.3	47.3	56.5	47.1	47.4	0.40	0.58	0.50	0.44	0.48	0.59	0.701327	1.000000	-
Rv1501	-	30	44.1	48.6	34.5	52.7	56.3	58.3	-0.139	-0.012	-0.453	0.093	0.181	0.226	76.4	76.8	64.7	83.2	86.7	79.4	0.58	0.63	0.53	0.63	0.65	0.73	0.736124	1.000000	-
Rv1502	-	32	36.3	47.3	44.4	43.9	41.2	47.7	-0.232	0.111	0.026	0.013	-0.068	0.120	56.2	61.8	67.6	61.1	55.0	63.6	0.65	0.77	0.66	0.72	0.75	0.75	0.891216	1.000000	-
Rv1503c	-	18	181.3	180.1	179.8	171.0	165.0	162.4	0.063	0.055	0.052	-0.019	-0.069	-0.091	212.8	202.6	248.9	200.7	180.0	171.9	0.85	0.89	0.72	0.85	0.92	0.94	0.639601	1.000000	-
Rv1504c	-	12	287.6	249.9	301.5	306.2	291.3	283.6	0.005	-0.195	0.072	0.094	0.023	-0.015	287.6	249.9	301.5	306.2	291.3	283.6	1.00	1.00	1.00	1.00	1.00	1.00	0.973460	1.000000	-
Rv1505c	-	25	35.9	33.0	37.6	40.7	38.0	40.9	-0.062	-0.167	-0.004	0.100	0.011	0.104	74.7	58.9	64.7	59.9	54.3	58.4	0.48	0.56	0.58	0.68	0.70	0.70	0.544814	1.000000	-
Rv1506c	-	19	73.8	78.5	84.0	89.1	90.5	74.7	-0.139	-0.056	0.037	0.117	0.139	-0.123	89.5	102.8	114.0	123.9	107.5	97.8	0.82	0.76	0.74	0.72	0.84	0.76	0.500638	1.000000	-
Rv1507c	-	26	9.8	16.2	14.9	13.9	15.8	14.1	-0.373	0.151	0.060	-0.019	0.122	0.001	42.3	42.1	36.9	33.8	30.4	31.9	0.23	0.38	0.40	0.41	0.52	0.44	0.285858	1.000000	-
Rv1507A	-	16	30.0	39.6	40.6	33.0	40.5	51.4	-0.336	0.014	0.045	-0.217	0.041	0.352	57.6	57.6	72.1	54.6	53.9	78.3	0.52	0.69	0.56	0.60	0.75	0.66	0.763539	1.000000	-
Rv1508c	-	40	132.3	133.1	126.3	142.4	139.5	148.3	-0.049	-0.040	-0.113	0.054	0.026	0.110	163.7	152.1	155.5	162.8	155.1	164.7	0.81	0.88	0.81	0.88	0.90	0.90	0.941055	1.000000	-
Rv1508A	-	13	105.4	160.2	130.3	124.2	117.6	102.3	-0.217	0.364	0.077	0.010	-0.066	-0.259	114.2	166.6	141.2	124.2	122.3	110.8	0.92	0.96	0.92	1.00	0.96	0.92	0.468488	1.000000	-
Rv1509	-	16	45.8	39.2	24.8	43.1	56.0	41.6	0.121	-0.080	-0.649	0.040	0.383	-0.005	88.0	66.1	66.1	86.1	94.3	73.9	0.52	0.59	0.38	0.50	0.59	0.56	0.883017	1.000000	-
Rv1510	-	22	321.2	295.4	294.0	302.7	315.9	282.0	0.088	-0.031	-0.037	0.004	0.064	-0.097	341.9	309.4	300.8	317.1	330.9	295.4	0.94	0.95	0.98	0.95	0.95	0.95	0.989655	1.000000	-
Rv1511	gmdA	19	233.5	252.9	223.0	242.8	248.7	227.8	-0.028	0.085	-0.093	0.028	0.061	-0.063	246.5	267.0	249.2	271.4	262.5	240.4	0.95	0.95	0.89	0.89	0.95	0.95	0.959769	1.000000	-
Rv1512	epiA	11	25.4	40.8	31.8	30.9	46.0	22.2	-0.315	0.276	-0.041	-0.078	0.430	-0.476	40.0	47.3	50.0	48.5	63.3	27.2	0.64	0.86	0.64	0.64	0.73	0.82	0.030810	0.334055	-
Rv1513	-	7	47.2	41.4	48.7	35.5	49.0	51.6	0.045	-0.123	0.086	-0.321	0.094	0.164	55.0	52.7	56.8	46.6	52.8	72.3	0.86	0.79	0.86	0.76	0.93	0.71	0.590970	1.000000	-
Rv1514c	-	17	56.1	57.7	65.8	41.0	54.7	63.6	-0.009	0.028	0.203	-0.419	-0.043	0.158	65.0	67.6	82.8	52.2	74.3	83.1	0.86	0.85	0.79	0.78	0.74	0.76	0.086275	0.684368	-
Rv1515c	-	15	43.5	57.9	42.6	53.9	40.0	55.5	-0.152	0.223	-0.180	0.128	-0.260	0.167	63.2	82.8	71.0	69.3	57.2	72.5	0.69	0.70	0.60	0.78	0.70	0.77	0.894365	1.000000	-
Rv1516c	-	11	52.0	54.6	51.0	48.5	42.8	49.6	0.057	0.123	0.032	-0.034	-0.195	-0.003	74.6	70.7	70.1	64.0	55.4	54.6	0.70	0.77	0.73	0.76	0.77	0.91	0.911837	1.000000	-
Rv1517	-	13	61.9	51.1	58.0	73.4	68.0	69.1	-0.035	-0.291	-0.123	0.193	0.089	0.111	89.5	73.8	83.7	102.2	117.8	105.6	0.69	0.69	0.69	0.72	0.58	0.65	0.735418	1.000000	-
Rv1518	-	11	118.8	101.8	107.8	86.5	85.7	102.3	0.231	0.018	0.096	-0.206	-0.218	0.025	130.7	112.0	124.8	98.4	94.3	112.6	0.91	0.91	0.86	0.88	0.91	0.91	0.984718	1.000000	-
Rv1519	-	2	306.7	219.3	310.5	209.3	246.9	226.3	0.272	-0.203	0.289	-0.269	-0.036	-0.158	306.7	219.3	310.5	209.3	246.9	226.3	1.00	1.00	1.00	1.00	1.00	1.00	0.555967	1.000000	-
Rv1520	-	20	80.8	103.8	91.0	79.9	81.9	83.5	-0.098	0.245	0.065	-0.113	-0.079	-0.054	95.0	112.2	104.0	88.8	91.0	92.7	0.85	0.93	0.88	0.90	0.90	0.90	0.948227	1.000000	-
Rv1521	fadD25	35	78.4	92.6	75.4	83.7	84.0	101.4	-0.124	0.102	-0.177	-0.036	-0.031	0.227	91.5	101.2	94.2	95.5	91.8	102.8	0.86	0.91	0.80	0.88	0.91	0.99	0.096752	0.727377	-
Rv1522c	mmpL12	46	134.4	148.6	123.3	151.4	139.5	143.2	-0.058	0.082	-0.177	0.109	-0.005	0.031	189.2	170.8	169.3	181.7	164.6	173.3	0.71	0.87	0.73	0.83	0.85	0.83	0.437758	1.000000	-
Rv1523	-	15	95.3	108.8	80.0	80.5	93.8	115.1	-0.004	0.178	-0.243	-0.235	-0.026	0.256	126.2	130.6	100.0	106.5	112.5	132.8	0.76	0.83	0.80	0.76	0.83	0.87	0.948512	1.000000	-
Rv1524	-	12	86.5	86.2	97.3	123.7	110.5	113.9	-0.240	-0.244	-0.078	0.253	0.097	0.138	115.3	108.9	101.6	153.5	126.3	124.2	0.75	0.79	0.96	0.81	0.88	0.92	0.168670	0.997024	-
Rv1525	wbbL2	20	38.7	30.1	28.2	30.2	37.6	32.3	0.207	-0.111	-0.189	-0.104	0.171	-0.021	66.3	42.9	49.1	46.5	53.8	49.7	0.58	0.70	0.57	0.65	0.70	0.65	0.803426	1.000000	-
Rv1526c	-	18	136.4	149.5	154.0	156.6	113.3	121.1	-0.021	0.106	0.148	0.172	-0.278	-0.186	179.7	185.5	184.8	172.6	140.7	189.6	0.76	0.81	0.83	0.91	0.81	0.64	0.194165	1.000000	-
Rv1527c	pks5	86	112.6	107.6	116.2	109.3	107.4	103.8	0.039	-0.024	0.082	-0.003	-0.027	-0.073	130.3	126.7	140.8	124.8	124.0	121.5	0.86	0.85	0.83	0.88	0.87	0.85	0.950739	1.000000	-
Rv1528c	papA4	7	256.5	227.0	242.4	229.0	263.8	203.9	0.111	-0.061	0.031	-0.049	0.151	-0.213	256.5	227.0	242.4	229.0	263.8	203.9	1.00	1.00	1.00	1.00	1.00	1.00	0.876347	1.000000	-
Rv1529	fadD24	33	79.9	61.0	79.0	74.3	76.0	70.3	0.114	-0.249	0.100	0.016	0.047	-0.058	94.1	78.9	89.9	86.5	83.6	82.9	0.85	0.77	0.88	0.86	0.91	0.85	0.740305	1.000000	-
Rv1530	adh	21	55.8	67.5	55.6	57.3	60.3	57.2	-0.073	0.181	-0.078	-0.037	0.031	-0.041	81.8	91.4	89.8	73.7	74.5	70.6	0.68	0.74	0.62	0.78	0.81	0.81	0.842166	1.000000	-
Rv1531	-	8	66.6	70.6	120.8	65.8	69.1	74.9	-0.212	-0.134	0.600	-0.229	-0.163	-0.054	88.8	94.1	138.0	79.0	92.2	92.2	0.75	0.75	0.88	0.83	0.75	0.81	0.754484	1.000000	-
Rv1532c	-	4	66.9	124.6	125.0	165.0	105.1	99.8	-0.733	0.118	0.123	0.510	-0.117	-0.188	72.9	124.6	166.7	165.0	105.1	114.0	0.92	1.00	0.75	1.00	1.00	0.88	0.274175	1.000000	-
Rv1533	-	10	85.1	81.9	74.9	78.8	77.9	92.8	0.051	0.001	-0.122	-0.052	-0.067	0.170	106.3	96.4	93.6	87.6	97.4	109.2	0.80	0.85	0.80	0.90	0.80	0.85	0.979359	1.000000	-
Rv1534	-	16	112.9	141.6	153.2	138.1	132.7	128.6	-0.243	0.072	0.181	0.036	-0.019	-0.063	123.2	146.2	153.2	138.1	137.0	128.6	0.92	0.97	1.00	1.00	0.97	1.00	0.275364	1.000000	-
Rv1535	-	4	82.3	79.8	71.1	94.3	90.2	106.4	-0.082	-0.123	-0.279	0.105	0.044	0.270	82.3	79.8	71.1	94.3	90.2	106.4	1.00	1.00	1.00	1.00	1.00	1.00	0.223396	1.000000	-
Rv1536	ileS	72	0.0	0.0	0.0	0.1	0.0	0.0	-0.003	-0.003	-0.003	0.016	-0.003	-0.003	0.0	0.0	0.0	14.8	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1537	dinX	13	109.1	151.1	135.2	125.0	116.1	160.5	-0.273	0.180	0.025	-0.084	-0.187	0.264	132.9	157.2	152.9	139.3	120.8	181.4	0.82	0.96	0.88	0.90	0.96	0.88	0.676627	1.000000	-
Rv1538c	ansA	14	249.8	241.5	253.5	216.9	192.0	237.1	0.106	0.058	0.127	-0.094	-0.265	0.032	249.8	260.0	273.0	227.8	206.8	237.1	1.00	0.93	0.93	0.95	0.93	1.00	0.460824	1.000000	-
Rv1539	lspA	8	35.1	51.4	43.7	37.4	67.5	32.3	-0.307	0.187	-0.025	-0.226	0.549	-0.409	76.5	74.8	99.9	64.1	83.1	47.0	0.46	0.69	0.44	0.58	0.81	0.69	0.515864	1.000000	-
Rv1540	-	12	3.5	13.6	23.4	35.0	25.0	12.7	-1.489	-0.362	0.253	0.747	0.329	-0.434	21.0	18.1	37.5	50.4	33.3	19.0	0.17	0.75	0.62	0.69	0.75	0.67	0.000000	0.000000	-
Rv1541c	lprI	9	177.0	210.4	171.1	169.0	170.9	179.4	-0.021	0.222	-0.068	-0.086	-0.070	-0.002	183.8	210.4	181.2	175.5	170.9	179.4	0.96	1.00	0.94	0.96	1.00	1.00	0.955058	1.000000	-
Rv1542c	glbN	7	193.0	152.5	157.7	152.3	178.0	201.4	0.158	-0.172	-0.125	-0.174	0.044	0.218	193.0	152.5	157.7	152.3	178.0	201.4	1.00	1.00	1.00	1.00	1.00	1.00	0.681071	1.000000	-
Rv1543	-	14	74.6	111.1	76.9	105.3	91.6	103.0	-0.311	0.234	-0.270	0.159	-0.032	0.129	111.9	124.5	107.7	142.6	116.6	120.2	0.67	0.89	0.71	0.74	0.79	0.86	0.726268	1.000000	-
Rv1544	-	11	159.6	159.2	170.3	155.3	148.0	172.8	-0.011	-0.015	0.080	-0.050	-0.116	0.100	195.1	175.1	178.4	170.8	162.8	172.8	0.82	0.91	0.95	0.91	0.91	1.00	0.738801	1.000000	-
Rv1545	-	3	208.4	251.8	259.0	248.2	271.2	290.9	-0.285	-0.017	0.023	-0.038	0.088	0.187	312.5	377.7	259.0	279.2	271.2	436.3	0.67	0.67	1.00	0.89	1.00	0.67	0.306004	1.000000	-
Rv1546	-	3	348.0	477.1	364.3	304.3	385.0	351.2	-0.094	0.356	-0.028	-0.284	0.050	-0.080	348.0	477.1	364.3	304.3	385.0	351.2	1.00	1.00	1.00	1.00	1.00	1.00	0.749647	1.000000	-
Rv1547	dnaE	45	0.1	0.1	0.0	0.0	0.0	0.0	0.023	0.022	-0.011	-0.011	-0.011	-0.011	16.4	10.4	0.0	0.0	0.0	0.0	0.01	0.01	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1548c	PPE21	41	46.6	50.6	46.8	47.0	47.5	51.5	-0.048	0.060	-0.043	-0.036	-0.022	0.084	106.1	88.3	112.8	103.2	99.9	98.2	0.44	0.57	0.41	0.46	0.48	0.52	0.944764	1.000000	-
Rv1549	fadD11.1	9	161.9	167.0	213.0	158.1	178.2	189.2	-0.132	-0.089	0.253	-0.166	0.003	0.087	218.5	231.2	273.9	158.1	229.1	243.2	0.74	0.72	0.78	1.00	0.78	0.78	0.022521	0.260459	-
Rv1550	fadD11	25	135.3	136.2	145.9	108.8	115.1	152.6	0.031	0.040	0.136	-0.271	-0.193	0.199	161.0	154.7	178.0	140.7	137.0	162.4	0.84	0.88	0.82	0.77	0.84	0.94	0.597437	1.000000	-
Rv1551	plsB1	29	129.4	144.8	138.1	137.4	127.4	127.5	-0.049	0.107	0.041	0.034	-0.071	-0.070	148.1	152.7	160.2	140.6	131.9	145.0	0.87	0.95	0.86	0.98	0.97	0.88	0.231917	1.000000	-
Rv1552	frdA	34	67.7	84.3	66.9	70.4	70.3	75.4	-0.092	0.204	-0.107	-0.040	-0.042	0.053	83.2	98.8	79.9	86.5	83.8	98.6	0.81	0.85	0.84	0.81	0.84	0.76	0.556930	1.000000	-
Rv1553	frdB	13	117.9	122.5	121.4	133.5	112.6	129.8	-0.058	-0.005	-0.017	0.114	-0.122	0.076	135.2	138.4	137.2	148.7	127.2	140.6	0.87	0.88	0.88	0.90	0.88	0.92	0.999805	1.000000	-
Rv1554	frdC	9	174.4	170.2	160.9	169.8	162.5	152.2	0.078	0.044	-0.035	0.040	-0.022	-0.113	204.7	191.5	160.9	169.8	182.8	152.2	0.85	0.89	1.00	1.00	0.89	1.00	0.181939	1.000000	-
Rv1555	frdD	3	155.2	145.7	88.7	134.9	124.4	155.9	0.203	0.116	-0.570	0.008	-0.104	0.209	155.2	145.7	88.7	134.9	124.4	155.9	1.00	1.00	1.00	1.00	1.00	1.00	0.168092	0.996892	-
Rv1556	-	11	151.5	191.2	160.0	166.9	175.4	161.1	-0.142	0.184	-0.066	-0.006	0.063	-0.056	156.3	210.3	176.0	172.1	175.4	177.2	0.97	0.91	0.91	0.97	1.00	0.91	0.661164	1.000000	-
Rv1557	mmpL6	19	125.6	130.5	146.6	123.9	126.9	144.5	-0.079	-0.027	0.136	-0.099	-0.065	0.115	135.1	154.9	154.8	138.5	141.8	144.5	0.93	0.84	0.95	0.89	0.89	1.00	0.277593	1.000000	-
Rv1558	-	8	353.8	332.2	335.9	310.2	284.8	247.9	0.184	0.095	0.110	-0.003	-0.124	-0.320	369.2	332.2	335.9	310.2	284.8	247.9	0.96	1.00	1.00	1.00	1.00	1.00	0.923010	1.000000	-
Rv1559	ilvA	23	150.1	152.2	143.9	148.6	119.6	139.3	0.074	0.094	0.016	0.061	-0.242	-0.030	167.0	170.7	174.2	173.8	137.5	149.0	0.90	0.89	0.83	0.86	0.87	0.93	0.907116	1.000000	-
Rv1560	-	2	46.1	41.0	64.2	58.1	46.0	54.9	-0.150	-0.301	0.288	0.154	-0.154	0.078	55.3	41.0	64.2	58.1	46.0	109.7	0.83	1.00	1.00	1.00	1.00	0.50	0.209658	1.000000	-
Rv1561	-	9	110.2	97.1	76.8	104.1	97.4	88.6	0.194	0.020	-0.300	0.116	0.024	-0.105	110.2	97.1	76.8	104.1	97.4	88.6	1.00	1.00	1.00	1.00	1.00	1.00	0.372382	1.000000	-
Rv1562c	treZ	30	59.9	58.1	61.2	62.7	61.7	56.0	0.000	-0.041	0.027	0.060	0.039	-0.090	89.9	87.2	87.4	86.8	77.2	80.0	0.67	0.67	0.70	0.72	0.80	0.70	0.971336	1.000000	-
Rv1563c	treY	31	47.9	45.0	64.4	50.1	56.2	50.7	-0.117	-0.199	0.274	-0.057	0.092	-0.043	70.7	75.4	90.7	70.7	75.7	87.3	0.68	0.60	0.71	0.71	0.74	0.58	0.124008	0.840057	-
Rv1564c	treX	42	59.1	56.7	54.5	57.0	59.4	55.7	0.047	-0.007	-0.062	-0.001	0.053	-0.033	81.0	85.1	80.2	84.5	83.2	69.8	0.73	0.67	0.68	0.67	0.71	0.80	0.678263	1.000000	-
Rv1565c	-	41	58.5	50.9	62.9	34.4	36.5	31.0	0.324	0.140	0.422	-0.364	-0.290	-0.492	78.2	66.2	83.2	47.5	46.7	42.4	0.75	0.77	0.76	0.72	0.78	0.73	0.000000	0.000017	-
Rv1566c	-	10	164.8	280.4	226.0	331.1	340.3	309.2	-0.723	0.026	-0.279	0.262	0.301	0.165	183.1	280.4	265.9	354.7	378.1	343.6	0.90	1.00	0.85	0.93	0.90	0.90	0.000342	0.007720	-
Rv1567c	-	8	85.2	100.0	88.5	99.3	94.3	117.6	-0.184	0.035	-0.133	0.026	-0.046	0.258	97.4	114.3	101.1	99.3	94.3	117.6	0.88	0.88	0.88	1.00	1.00	1.00	0.385346	1.000000	-
Rv1568	bioA	15	179.3	224.3	212.9	203.1	187.5	142.1	-0.093	0.223	0.149	0.083	-0.030	-0.418	206.9	224.3	236.5	228.5	200.9	163.9	0.87	1.00	0.90	0.89	0.93	0.87	0.484233	1.000000	-
Rv1569	bioF1	7	268.7	205.2	278.4	221.6	216.5	221.9	0.187	-0.194	0.237	-0.085	-0.118	-0.083	268.7	239.4	278.4	258.6	252.6	258.9	1.00	0.86	1.00	0.86	0.86	0.86	0.442314	1.000000	-
Rv1570	bioD	2	88.6	87.5	79.7	71.8	94.2	61.7	0.129	0.112	-0.014	-0.157	0.213	-0.360	132.8	87.5	159.4	143.5	125.6	61.7	0.67	1.00	0.50	0.50	0.75	1.00	0.495500	1.000000	-
Rv1571	-	2	68.7	148.4	50.2	89.4	70.4	33.8	-0.151	0.907	-0.569	0.206	-0.118	-1.076	68.7	148.4	100.3	89.4	93.9	67.7	1.00	1.00	0.50	1.00	0.75	0.50	0.183426	1.000000	-
Rv1572c	-	1	3.9	15.1	28.1	14.1	11.8	34.4	-1.368	-0.184	0.532	-0.264	-0.450	0.784	11.6	15.1	28.1	14.1	11.8	34.4	0.33	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1573	-	1	176.6	116.9	112.4	37.1	0.0	76.4	0.988	0.413	0.358	-1.121	-4.195	-0.171	176.6	116.9	112.4	37.1	0.0	76.4	1.00	1.00	1.00	1.00	0.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1574	-	2	62.3	58.6	79.7	72.4	61.0	76.6	-0.126	-0.207	0.207	0.076	-0.155	0.152	93.5	58.6	79.7	72.4	61.0	76.6	0.67	1.00	1.00	1.00	1.00	1.00	0.716732	1.000000	-
Rv1575	-	10	35.6	31.1	31.6	49.4	25.6	28.3	0.073	-0.097	-0.076	0.495	-0.337	-0.213	66.7	44.4	63.2	74.1	56.8	47.1	0.53	0.70	0.50	0.67	0.45	0.60	0.638490	1.000000	-
Rv1576c	-	7	3.0	11.0	13.8	18.3	7.7	2.0	-0.846	0.161	0.397	0.704	-0.169	-1.029	15.6	38.5	48.4	48.1	21.7	28.2	0.19	0.29	0.29	0.38	0.36	0.07	0.067691	0.585875	-
Rv1577c	-	7	9.0	30.5	25.5	21.3	35.2	19.3	-1.018	0.319	0.099	-0.116	0.498	-0.229	21.1	47.4	51.0	44.7	44.8	38.6	0.43	0.64	0.50	0.48	0.79	0.50	0.191940	1.000000	-
Rv1578c	-	4	81.5	88.1	50.2	76.0	96.3	57.2	0.115	0.221	-0.534	0.019	0.343	-0.361	81.5	88.1	66.9	76.0	128.5	65.4	1.00	1.00	0.75	1.00	0.75	0.88	0.054892	0.503491	-
Rv1579c	-	4	7.1	31.8	28.8	16.3	33.8	30.9	-1.298	0.306	0.183	-0.483	0.380	0.269	17.1	31.8	28.8	21.8	38.6	35.3	0.42	1.00	1.00	0.75	0.88	0.88	0.004338	0.069799	-
Rv1580c	-	4	105.0	166.7	111.8	120.9	144.6	145.7	-0.321	0.321	-0.235	-0.127	0.122	0.133	105.0	166.7	127.8	120.9	144.6	145.7	1.00	1.00	0.88	1.00	1.00	1.00	0.762548	1.000000	-
Rv1581c	-	6	79.8	75.7	51.0	44.6	76.5	57.4	0.294	0.222	-0.304	-0.481	0.237	-0.149	95.7	75.7	55.7	50.1	102.1	57.4	0.83	1.00	0.92	0.89	0.75	1.00	0.076512	0.632052	-
Rv1582c	-	29	30.9	28.1	35.8	31.6	30.9	45.6	-0.114	-0.230	0.072	-0.085	-0.113	0.384	55.9	47.9	62.9	48.2	46.0	63.0	0.55	0.59	0.57	0.66	0.67	0.72	0.597967	1.000000	-
Rv1583c	-	5	109.1	79.2	133.7	106.7	126.3	89.6	0.021	-0.417	0.303	-0.009	0.224	-0.249	109.1	79.2	133.7	106.7	126.3	89.6	1.00	1.00	1.00	1.00	1.00	1.00	0.532643	1.000000	-
Rv1584c	-	3	254.7	345.6	341.6	428.1	364.4	281.8	-0.393	0.040	0.023	0.345	0.115	-0.250	286.6	414.7	409.9	642.1	364.4	338.2	0.89	0.83	0.83	0.67	1.00	0.83	0.681638	1.000000	-
Rv1585c	-	8	66.3	52.2	51.7	61.3	57.9	45.8	0.229	-0.089	-0.103	0.123	0.047	-0.260	99.5	92.9	68.9	98.1	92.6	81.5	0.67	0.56	0.75	0.62	0.62	0.56	0.869197	1.000000	-
Rv1586c	-	20	101.2	100.9	121.4	126.3	101.4	92.1	-0.080	-0.084	0.172	0.227	-0.077	-0.208	123.9	109.1	138.8	133.0	115.9	108.4	0.82	0.93	0.88	0.95	0.88	0.85	0.682814	1.000000	-
Rv1587c	-	13	82.8	100.2	95.7	103.5	84.9	109.7	-0.205	0.057	-0.006	0.102	-0.170	0.182	124.1	144.7	138.2	149.5	122.7	158.5	0.67	0.69	0.69	0.69	0.69	0.69	0.997485	1.000000	-
Rv1588c	-	8	236.1	184.3	227.0	212.2	216.8	224.7	0.120	-0.229	0.065	-0.031	-0.000	0.050	236.1	226.9	227.0	242.5	247.8	256.8	1.00	0.81	1.00	0.88	0.88	0.88	0.304807	1.000000	-
Rv1589	bioB	9	213.0	162.2	147.4	198.8	204.9	201.3	0.176	-0.207	-0.340	0.079	0.121	0.097	213.0	182.5	176.9	198.8	230.5	241.6	1.00	0.89	0.83	1.00	0.89	0.83	0.096801	0.727377	-
Rv1590	-	3	330.7	247.8	341.4	363.5	310.4	263.5	0.094	-0.315	0.139	0.228	0.004	-0.229	330.7	247.8	341.4	363.5	310.4	263.5	1.00	1.00	1.00	1.00	1.00	1.00	0.954492	1.000000	-
Rv1591	-	8	299.3	249.4	203.2	210.9	235.3	240.6	0.314	0.056	-0.233	-0.181	-0.027	0.005	342.0	285.0	250.1	241.1	289.6	296.1	0.88	0.88	0.81	0.88	0.81	0.81	0.979323	1.000000	-
Rv1592c	-	24	133.1	18.1	179.7	1.0	5.2	8.0	1.143	-1.433	1.563	-3.393	-2.622	-2.261	140.9	28.1	200.6	17.1	19.0	16.8	0.94	0.65	0.90	0.06	0.27	0.48	0.000000	0.000000	-
Rv1593c	-	11	171.1	139.5	204.7	160.9	157.6	147.3	0.063	-0.222	0.315	-0.022	-0.052	-0.146	171.1	139.5	214.4	166.0	157.6	162.0	1.00	1.00	0.95	0.97	1.00	0.91	0.479818	1.000000	-
Rv1594	nadA	10	0.0	0.5	1.3	0.0	0.0	0.0	-0.082	0.055	0.242	-0.082	-0.082	-0.082	0.0	10.0	12.6	0.0	0.0	0.0	0.00	0.05	0.10	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1595	nadB	23	0.6	1.3	1.4	2.2	3.8	1.1	-0.273	-0.087	-0.080	0.103	0.381	-0.139	13.2	20.6	15.7	38.5	34.7	17.1	0.04	0.07	0.09	0.06	0.11	0.07	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1596	nadC	12	1.2	3.8	0.5	7.8	18.5	1.4	-0.757	-0.256	-0.931	0.278	1.158	-0.730	14.8	18.3	12.6	28.0	34.2	10.8	0.08	0.21	0.04	0.28	0.54	0.12	0.000136	0.003402	-
Rv1597	-	12	219.7	227.4	203.3	170.8	192.8	197.1	0.119	0.168	0.010	-0.235	-0.065	-0.034	219.7	227.4	203.3	186.3	201.2	205.6	1.00	1.00	1.00	0.92	0.96	0.96	0.464653	1.000000	-
Rv1598c	-	8	122.1	156.1	128.0	127.8	144.6	150.6	-0.172	0.170	-0.107	-0.109	0.063	0.120	139.5	178.4	146.3	139.5	165.2	172.2	0.88	0.88	0.88	0.92	0.88	0.88	0.969269	1.000000	-
Rv1599	hisD	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1600	hisC1	24	0.0	0.2	0.0	0.2	0.0	0.0	-0.019	0.040	-0.019	0.033	-0.019	-0.019	0.0	10.0	0.0	13.0	0.0	0.0	0.00	0.02	0.00	0.01	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1601	hisB	14	0.0	0.0	0.0	0.0	0.0	0.3	-0.016	-0.016	-0.016	-0.016	-0.016	0.078	0.0	0.0	0.0	0.0	0.0	9.4	0.00	0.00	0.00	0.00	0.00	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1602	hisH	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1603	hisA	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1604	impA	11	30.8	38.4	33.6	56.9	41.7	63.0	-0.453	-0.177	-0.347	0.335	-0.070	0.470	40.7	49.7	41.1	64.7	48.3	69.3	0.76	0.77	0.82	0.88	0.86	0.91	0.019961	0.234942	-
Rv1605	hisF	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1606	hisI	7	0.6	0.0	0.0	0.7	0.0	0.0	0.092	-0.059	-0.059	0.131	-0.059	-0.059	11.6	0.0	0.0	14.8	0.0	0.0	0.05	0.00	0.00	0.05	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1607	chaA	9	139.1	128.6	137.1	137.6	139.2	146.1	0.012	-0.098	-0.008	-0.003	0.012	0.080	139.1	128.6	145.2	137.6	139.2	146.1	1.00	1.00	0.94	1.00	1.00	1.00	0.943999	1.000000	-
Rv1608c	bcpB	6	50.2	59.6	52.7	62.6	82.7	83.4	-0.348	-0.120	-0.284	-0.053	0.321	0.333	56.4	71.5	63.2	75.2	82.7	91.0	0.89	0.83	0.83	0.83	1.00	0.92	0.713993	1.000000	-
Rv1609	trpE	25	0.0	0.0	0.0	0.0	0.5	0.0	-0.022	-0.022	-0.022	-0.022	0.107	-0.022	0.0	0.0	0.0	0.0	11.8	0.0	0.00	0.00	0.00	0.00	0.04	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1610	-	5	0.8	5.1	3.8	0.0	1.8	2.2	-0.333	0.478	0.271	-0.541	-0.097	-0.023	11.6	12.8	18.9	0.0	9.0	10.8	0.07	0.40	0.20	0.00	0.20	0.20	0.285439	1.000000	-
Rv1611	trpC	10	0.0	0.0	0.0	0.0	0.0	0.5	-0.026	-0.026	-0.026	-0.026	-0.026	0.122	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1612	trpB	18	0.0	0.0	0.0	0.3	0.0	0.0	-0.013	-0.013	-0.013	0.064	-0.013	-0.013	0.0	0.0	0.0	14.8	0.0	0.0	0.00	0.00	0.00	0.02	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1613	trpA	16	0.0	0.0	0.0	0.0	0.0	0.3	-0.016	-0.016	-0.016	-0.016	-0.016	0.078	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1614	lgt	23	30.9	29.5	30.4	29.6	22.0	23.3	0.139	0.081	0.118	0.086	-0.274	-0.203	355.4	339.1	349.5	291.9	202.1	268.4	0.09	0.09	0.09	0.10	0.11	0.09	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1615	-	8	135.1	192.3	136.3	113.3	134.7	129.7	-0.052	0.442	-0.039	-0.295	-0.056	-0.108	147.4	256.4	136.3	113.3	134.7	129.7	0.92	0.75	1.00	1.00	1.00	1.00	0.010817	0.146798	-
Rv1616	-	9	138.1	152.0	164.5	149.6	152.0	181.0	-0.172	-0.038	0.073	-0.060	-0.038	0.206	149.1	171.0	185.1	161.5	171.0	181.0	0.93	0.89	0.89	0.93	0.89	1.00	0.815781	1.000000	-
Rv1617	pykA	13	13.3	23.1	6.2	6.5	8.6	18.8	0.046	0.661	-0.662	-0.622	-0.384	0.421	34.7	31.6	26.9	21.3	22.4	30.5	0.38	0.73	0.23	0.31	0.38	0.62	0.012623	0.166225	-
Rv1618	tesB1	15	164.0	167.5	186.8	196.8	182.1	146.3	-0.082	-0.052	0.100	0.174	0.065	-0.242	180.0	173.3	207.6	210.9	195.1	156.8	0.91	0.97	0.90	0.93	0.93	0.93	0.984431	1.000000	-
Rv1619	-	23	88.5	66.7	83.2	78.0	103.2	57.3	0.146	-0.237	0.062	-0.025	0.357	-0.440	105.3	80.7	112.5	91.3	128.3	77.5	0.84	0.83	0.74	0.86	0.80	0.74	0.146047	0.932386	-
Rv1620c	cydC	18	133.3	90.2	110.6	124.7	115.5	104.5	0.227	-0.312	-0.031	0.135	0.028	-0.110	144.0	98.4	137.4	134.7	138.6	104.5	0.93	0.92	0.81	0.93	0.83	1.00	0.066733	0.580095	-
Rv1621c	cydD	20	144.9	112.1	130.7	118.0	142.6	137.2	0.141	-0.215	-0.002	-0.144	0.119	0.065	164.0	131.9	137.6	133.6	163.0	148.3	0.88	0.85	0.95	0.88	0.88	0.93	0.756838	1.000000	-
Rv1622c	cydB	20	131.4	143.7	162.6	164.0	145.2	145.9	-0.173	-0.049	0.124	0.136	-0.034	-0.028	151.6	169.1	185.8	182.2	152.8	162.1	0.87	0.85	0.88	0.90	0.95	0.90	0.933892	1.000000	-
Rv1623c	cydA	18	129.9	131.9	138.2	116.7	144.7	144.2	-0.046	-0.025	0.041	-0.195	0.104	0.099	152.5	148.4	171.6	134.0	162.8	152.7	0.85	0.89	0.81	0.87	0.89	0.94	0.942917	1.000000	-
Rv1624c	-	5	11.7	20.3	25.6	16.8	16.8	24.0	-0.533	0.064	0.337	-0.149	-0.152	0.262	22.0	29.0	42.6	25.2	21.0	30.0	0.53	0.70	0.60	0.67	0.80	0.80	0.326876	1.000000	-
Rv1625c	cya	29	243.7	240.0	236.6	248.7	239.1	222.5	0.031	0.009	-0.011	0.060	0.004	-0.098	275.3	267.6	263.9	281.0	261.7	230.4	0.89	0.90	0.90	0.89	0.91	0.97	0.950457	1.000000	-
Rv1626	-	5	192.0	102.2	200.3	101.3	108.8	137.4	0.439	-0.439	0.498	-0.451	-0.353	-0.029	192.0	102.2	200.3	101.3	108.8	137.4	1.00	1.00	1.00	1.00	1.00	1.00	0.001362	0.026384	-
Rv1627c	-	17	97.4	102.9	124.6	109.0	110.6	102.2	-0.140	-0.064	0.200	0.015	0.036	-0.073	130.7	120.6	184.1	142.5	139.3	139.1	0.75	0.85	0.68	0.76	0.79	0.74	0.745534	1.000000	-
Rv1628c	-	7	45.8	38.2	26.4	58.7	34.9	29.7	0.209	-0.023	-0.486	0.534	-0.138	-0.341	80.1	53.5	61.5	94.7	69.9	37.8	0.57	0.71	0.43	0.62	0.50	0.79	0.615565	1.000000	-
Rv1629	polA	38	18.7	21.9	23.9	20.0	25.9	21.9	-0.191	-0.010	0.096	-0.113	0.193	-0.009	62.7	55.4	62.7	61.7	58.0	59.4	0.30	0.39	0.38	0.32	0.45	0.37	0.960336	1.000000	-
Rv1630	rpsA	14	0.9	1.5	0.0	4.4	1.4	2.5	-0.188	-0.065	-0.437	0.473	-0.092	0.139	19.9	10.3	0.0	30.8	19.0	17.2	0.05	0.14	0.00	0.14	0.07	0.14	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1631	coaE	11	12.4	21.6	16.2	31.0	25.3	17.4	-0.556	0.054	-0.278	0.488	0.241	-0.198	68.5	59.5	118.5	92.9	92.9	63.7	0.18	0.36	0.14	0.33	0.27	0.27	0.784004	1.000000	-
Rv1632c	-	10	79.5	74.3	66.1	85.7	73.6	88.1	0.029	-0.064	-0.221	0.130	-0.077	0.168	88.4	82.5	82.6	95.2	81.7	88.1	0.90	0.90	0.80	0.90	0.90	1.00	0.815270	1.000000	-
Rv1633	uvrB	38	197.2	189.8	204.3	201.7	206.7	201.9	-0.022	-0.076	0.028	0.010	0.045	0.011	212.1	212.1	218.7	207.2	224.5	207.3	0.93	0.89	0.93	0.97	0.92	0.97	0.523102	1.000000	-
Rv1634	-	27	321.9	289.1	300.1	327.5	317.7	263.7	0.084	-0.068	-0.015	0.109	0.066	-0.199	326.0	289.1	300.1	327.5	323.7	268.6	0.99	1.00	1.00	1.00	0.98	0.98	0.783151	1.000000	-
Rv1635c	-	28	185.6	189.0	185.6	189.1	187.7	205.8	-0.036	-0.011	-0.036	-0.010	-0.020	0.109	190.2	192.5	185.6	189.1	187.7	205.8	0.98	0.98	1.00	1.00	1.00	1.00	0.671134	1.000000	-
Rv1636	TB15.3	7	395.6	110.7	502.2	70.7	123.1	79.6	0.874	-0.919	1.214	-1.531	-0.771	-1.370	461.5	129.1	540.9	123.7	143.6	101.3	0.86	0.86	0.93	0.57	0.86	0.79	0.000000	0.000000	-
Rv1637c	-	10	287.9	268.7	274.3	263.6	249.3	263.1	0.102	0.005	0.034	-0.023	-0.101	-0.025	287.9	268.7	304.8	263.6	249.3	263.1	1.00	1.00	0.90	1.00	1.00	1.00	0.660099	1.000000	-
Rv1638	uvrA	37	127.3	115.9	142.0	125.0	128.9	124.3	0.001	-0.129	0.153	-0.025	0.018	-0.032	155.3	129.9	164.2	140.1	142.3	141.5	0.82	0.89	0.86	0.89	0.91	0.88	0.963841	1.000000	-
Rv1638A	-	5	17.5	31.4	17.5	25.0	22.9	28.8	-0.361	0.337	-0.356	0.055	-0.048	0.227	37.4	52.4	43.8	46.8	38.2	41.1	0.47	0.60	0.40	0.53	0.60	0.70	0.988396	1.000000	-
Rv1639c	-	13	139.4	131.6	120.2	105.2	120.8	127.0	0.163	0.082	-0.044	-0.227	-0.037	0.033	155.4	155.5	142.0	117.3	142.7	157.2	0.90	0.85	0.85	0.90	0.85	0.81	0.872270	1.000000	-
Rv1640c	lysS	59	83.2	106.2	84.2	125.0	124.0	95.8	-0.294	0.041	-0.276	0.267	0.255	-0.100	98.8	112.9	98.4	140.1	139.3	107.7	0.84	0.94	0.86	0.89	0.89	0.89	0.000042	0.001149	-
Rv1641	infC	11	0.0	0.0	0.0	0.0	1.2	0.0	-0.058	-0.058	-0.058	-0.058	0.259	-0.058	0.0	0.0	0.0	0.0	27.0	0.0	0.00	0.00	0.00	0.00	0.05	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1642	rpmI	1	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1643	rplT	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1644	tsnR	10	208.4	168.4	183.7	201.4	186.4	171.4	0.155	-0.144	-0.022	0.107	-0.002	-0.119	208.4	168.4	193.4	208.3	186.4	171.4	1.00	1.00	0.95	0.97	1.00	1.00	0.887821	1.000000	-
Rv1645c	-	23	162.9	195.1	159.8	179.9	171.5	189.6	-0.112	0.141	-0.139	0.027	-0.040	0.101	178.4	208.7	188.5	193.9	171.5	207.7	0.91	0.93	0.85	0.93	1.00	0.91	0.369244	1.000000	-
Rv1646	PE17	15	172.4	190.8	158.6	189.5	175.6	170.9	-0.031	0.111	-0.148	0.102	-0.005	-0.044	194.0	204.4	176.2	193.8	188.1	183.1	0.89	0.93	0.90	0.98	0.93	0.93	0.961830	1.000000	-
Rv1647	-	9	209.4	179.9	174.6	170.7	148.4	182.3	0.232	0.018	-0.023	-0.055	-0.251	0.037	226.2	202.3	196.5	192.1	157.1	182.3	0.93	0.89	0.89	0.89	0.94	1.00	0.942193	1.000000	-
Rv1648	-	12	242.1	213.9	225.2	271.2	235.7	223.0	0.041	-0.134	-0.062	0.202	0.003	-0.075	242.1	213.9	225.2	271.2	235.7	223.0	1.00	1.00	1.00	1.00	1.00	1.00	0.870458	1.000000	-
Rv1649	pheS	13	0.0	0.0	0.0	0.0	0.3	0.0	-0.017	-0.017	-0.017	-0.017	0.080	-0.017	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.04	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1650	pheT	33	0.2	0.0	0.0	0.0	0.0	0.0	0.039	-0.008	-0.008	-0.008	-0.008	-0.008	16.4	0.0	0.0	0.0	0.0	0.0	0.01	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1651c	PE_PGRS30	44	153.9	153.4	166.2	161.8	157.1	139.4	-0.013	-0.017	0.095	0.057	0.016	-0.151	183.0	170.9	195.0	189.0	168.6	149.5	0.84	0.90	0.85	0.86	0.93	0.93	0.683787	1.000000	-
Rv1652	argC	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1653	argJ	3	45.2	11.9	29.0	45.9	26.8	10.1	0.598	-0.975	0.038	0.620	-0.060	-1.133	67.8	17.8	58.1	68.9	53.6	20.2	0.67	0.67	0.50	0.67	0.50	0.50	0.302552	1.000000	-
Rv1654	argB	4	0.0	0.0	0.0	0.0	0.0	1.2	-0.055	-0.055	-0.055	-0.055	-0.055	0.249	0.0	0.0	0.0	0.0	0.0	9.4	0.00	0.00	0.00	0.00	0.00	0.12	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1655	argD	10	1.1	2.0	0.0	2.9	3.4	2.0	-0.170	0.028	-0.466	0.191	0.287	0.009	17.1	10.2	0.0	17.3	34.3	9.8	0.07	0.20	0.00	0.17	0.10	0.20	0.236879	1.000000	-
Rv1656	argF	5	0.0	0.0	3.1	0.0	0.0	0.0	-0.142	-0.142	0.554	-0.142	-0.142	-0.142	0.0	0.0	31.0	0.0	0.0	0.0	0.00	0.00	0.10	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1657	argR	3	450.4	404.2	419.2	350.1	279.7	299.3	0.291	0.137	0.189	-0.068	-0.386	-0.290	675.6	606.3	628.7	450.1	419.5	449.0	0.67	0.67	0.67	0.78	0.67	0.67	0.999478	1.000000	-
Rv1658	argG	16	0.0	0.3	0.0	0.0	0.0	0.0	-0.015	0.073	-0.015	-0.015	-0.015	-0.015	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.03	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1659	argH	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1660	pks10	9	176.6	196.7	198.2	212.2	208.1	153.2	-0.109	0.043	0.053	0.149	0.122	-0.308	176.6	196.7	198.2	212.2	208.1	153.2	1.00	1.00	1.00	1.00	1.00	1.00	0.599591	1.000000	-
Rv1661	pks7	73	41.7	33.5	45.0	49.2	41.4	36.1	0.017	-0.262	0.117	0.231	0.009	-0.167	82.3	64.3	92.6	84.1	81.7	66.7	0.51	0.52	0.49	0.58	0.51	0.54	0.387736	1.000000	-
Rv1662	pks8	62	21.3	26.1	27.4	21.2	25.9	18.6	-0.112	0.129	0.188	-0.117	0.121	-0.265	46.6	44.3	49.9	42.4	40.7	34.5	0.46	0.59	0.55	0.50	0.64	0.54	0.212183	1.000000	-
Rv1663	pks17	17	64.0	45.8	50.2	40.2	57.2	57.9	0.262	-0.179	-0.061	-0.347	0.111	0.128	79.6	62.3	65.6	55.5	69.4	67.9	0.80	0.74	0.76	0.73	0.82	0.85	0.843421	1.000000	-
Rv1664	pks9	42	55.8	60.3	69.4	61.7	52.3	54.1	-0.073	0.031	0.219	0.062	-0.158	-0.114	80.8	76.7	91.1	77.0	67.6	74.5	0.69	0.79	0.76	0.80	0.77	0.73	0.759482	1.000000	-
Rv1665	pks11	10	140.4	160.7	133.2	134.8	155.7	139.4	-0.036	0.153	-0.109	-0.092	0.109	-0.045	156.0	160.7	140.2	139.4	163.9	139.4	0.90	1.00	0.95	0.97	0.95	1.00	0.794349	1.000000	-
Rv1666c	cyp139	18	210.5	199.7	192.1	211.1	240.9	210.9	-0.002	-0.077	-0.131	0.001	0.188	0.000	214.5	217.9	209.6	211.1	255.1	230.0	0.98	0.92	0.92	1.00	0.94	0.92	0.208149	1.000000	-
Rv1667c	-	9	136.7	147.9	188.8	118.2	139.7	164.6	-0.123	-0.013	0.328	-0.325	-0.093	0.136	142.0	156.6	212.4	127.7	139.7	174.3	0.96	0.94	0.89	0.93	1.00	0.94	0.510984	1.000000	-
Rv1668c	-	12	117.8	125.1	133.1	103.7	95.3	93.2	0.077	0.161	0.247	-0.099	-0.215	-0.245	136.8	150.2	152.2	128.7	127.0	117.8	0.86	0.83	0.88	0.81	0.75	0.79	0.947767	1.000000	-
Rv1669	-	8	37.4	34.4	41.2	35.7	41.4	39.5	-0.028	-0.135	0.093	-0.088	0.101	0.041	59.9	45.9	59.9	53.6	55.2	57.5	0.62	0.75	0.69	0.67	0.75	0.69	0.999411	1.000000	-
Rv1670	-	10	47.0	56.1	51.6	52.7	63.4	67.1	-0.238	-0.005	-0.115	-0.088	0.157	0.235	52.2	62.3	68.8	60.8	74.5	67.1	0.90	0.90	0.75	0.87	0.85	1.00	0.234675	1.000000	-
Rv1671	-	13	39.9	42.0	49.1	63.0	40.1	43.5	-0.191	-0.125	0.076	0.407	-0.184	-0.079	53.7	57.5	67.1	74.4	49.7	56.6	0.74	0.73	0.73	0.85	0.81	0.77	0.706468	1.000000	-
Rv1672c	-	20	130.0	114.8	148.9	152.2	128.4	138.9	-0.057	-0.231	0.131	0.162	-0.075	0.034	162.6	139.1	170.2	179.0	138.8	150.1	0.80	0.82	0.88	0.85	0.93	0.93	0.810425	1.000000	-
Rv1673c	-	13	108.3	88.3	100.0	108.1	104.9	93.7	0.102	-0.177	-0.008	0.100	0.058	-0.097	132.0	91.9	113.0	124.0	113.6	97.4	0.82	0.96	0.88	0.87	0.92	0.96	0.724503	1.000000	-
Rv1674c	-	9	213.3	128.2	139.5	173.2	175.6	141.1	0.388	-0.325	-0.207	0.095	0.115	-0.192	274.3	164.8	193.2	222.6	243.1	181.4	0.78	0.78	0.72	0.78	0.72	0.78	0.977750	1.000000	-
Rv1675c	-	10	171.4	213.1	218.4	191.2	235.6	167.1	-0.213	0.093	0.128	-0.060	0.235	-0.248	171.4	213.1	242.6	191.2	235.6	208.9	1.00	1.00	0.90	1.00	1.00	0.80	0.017115	0.210910	-
Rv1676	-	8	29.0	31.8	34.0	57.0	42.5	41.7	-0.384	-0.270	-0.185	0.485	0.101	0.075	40.9	50.8	41.8	65.2	48.6	47.6	0.71	0.62	0.81	0.88	0.88	0.88	0.303116	1.000000	-
Rv1677	dsbF	11	20.5	30.2	23.3	27.2	28.7	33.5	-0.335	0.127	-0.187	-0.003	0.065	0.255	32.3	36.9	34.2	42.7	42.1	36.8	0.64	0.82	0.68	0.64	0.68	0.91	0.425256	1.000000	-
Rv1678	-	10	76.4	79.3	100.0	70.6	84.4	90.3	-0.121	-0.070	0.247	-0.227	0.014	0.106	84.9	88.1	100.0	88.3	93.8	112.9	0.90	0.90	1.00	0.80	0.90	0.80	0.169173	0.998524	-
Rv1679	fadE16	8	17.6	26.8	24.7	27.3	28.3	15.7	-0.331	0.165	0.063	0.186	0.230	-0.456	35.1	39.0	32.9	43.7	41.2	31.4	0.50	0.69	0.75	0.62	0.69	0.50	0.708717	1.000000	-
Rv1680	-	14	69.2	86.5	72.3	75.2	79.8	68.1	-0.113	0.190	-0.052	0.001	0.081	-0.133	103.7	100.9	112.5	98.7	101.6	82.9	0.67	0.86	0.64	0.76	0.79	0.82	0.918276	1.000000	-
Rv1681	moeX	12	187.5	153.3	177.0	179.6	155.9	135.5	0.181	-0.101	0.100	0.120	-0.078	-0.273	211.0	184.0	202.3	195.9	155.9	154.9	0.89	0.83	0.88	0.92	1.00	0.88	0.647685	1.000000	-
Rv1682	-	13	63.7	59.7	71.5	58.9	55.6	72.4	0.001	-0.084	0.157	-0.103	-0.180	0.173	77.6	64.7	80.8	67.6	62.8	72.4	0.82	0.92	0.88	0.87	0.88	1.00	0.600856	1.000000	-
Rv1683	-	36	12.6	20.1	11.3	23.9	30.2	17.7	-0.464	0.047	-0.577	0.249	0.535	-0.099	29.6	35.3	31.3	39.1	47.3	31.1	0.43	0.57	0.36	0.61	0.64	0.57	0.000187	0.004494	-
Rv1684	-	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1685c	-	7	35.5	42.1	53.0	55.4	53.8	53.7	-0.414	-0.195	0.105	0.163	0.125	0.123	43.8	49.1	61.8	58.2	62.8	53.7	0.81	0.86	0.86	0.95	0.86	1.00	0.397826	1.000000	-
Rv1686c	-	12	40.5	38.7	32.9	40.4	39.8	38.1	0.069	0.009	-0.196	0.065	0.045	-0.009	54.0	46.4	46.4	56.0	50.2	53.8	0.75	0.83	0.71	0.72	0.79	0.71	0.983530	1.000000	-
Rv1687c	-	10	106.6	124.4	109.1	102.0	119.4	124.6	-0.097	0.117	-0.065	-0.158	0.060	0.119	133.2	138.2	121.2	127.5	132.6	138.4	0.80	0.90	0.90	0.80	0.90	0.90	0.978935	1.000000	-
Rv1688	mpg	8	202.1	149.9	165.1	173.6	139.7	121.2	0.340	-0.078	0.056	0.126	-0.177	-0.375	202.1	171.4	188.7	173.6	159.6	121.2	1.00	0.88	0.88	1.00	0.88	1.00	0.239045	1.000000	-
Rv1689	tyrS	17	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1690	lprJ	6	103.0	139.8	135.8	99.2	105.7	76.3	-0.090	0.333	0.293	-0.142	-0.055	-0.500	123.6	139.8	135.8	119.0	115.3	83.2	0.83	1.00	1.00	0.83	0.92	0.92	0.480990	1.000000	-
Rv1691	-	9	95.2	83.6	97.2	178.8	148.5	111.6	-0.310	-0.487	-0.280	0.566	0.306	-0.091	128.5	100.3	125.0	201.2	167.1	111.6	0.74	0.83	0.78	0.89	0.89	1.00	0.027703	0.306193	-
Rv1692	-	10	86.7	159.6	132.6	140.6	132.0	99.0	-0.504	0.340	0.081	0.162	0.075	-0.323	96.3	187.8	147.3	150.6	165.0	123.7	0.90	0.85	0.90	0.93	0.80	0.80	0.084609	0.679353	-
Rv1693	-	1	100.0	126.7	90.6	73.9	94.7	60.8	0.127	0.454	-0.007	-0.284	0.053	-0.547	100.0	126.7	90.6	73.9	94.7	60.8	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1694	tlyA	8	144.8	101.7	108.3	100.4	64.7	106.8	0.453	-0.037	0.050	-0.054	-0.651	0.031	165.5	147.9	133.3	114.8	103.5	131.5	0.88	0.69	0.81	0.88	0.62	0.81	0.519564	1.000000	-
Rv1695	ppnK	7	1.1	0.0	0.0	0.0	1.0	0.0	0.183	-0.098	-0.098	-0.098	0.173	-0.098	22.6	0.0	0.0	0.0	14.5	0.0	0.05	0.00	0.00	0.00	0.07	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1696	recN	18	87.6	78.7	103.5	82.4	92.9	69.1	0.030	-0.116	0.259	-0.053	0.110	-0.292	105.1	101.2	116.4	90.9	104.5	80.2	0.83	0.78	0.89	0.91	0.89	0.86	0.737075	1.000000	-
Rv1697	-	15	0.0	0.3	0.0	0.0	0.8	0.0	-0.053	0.040	-0.053	-0.053	0.157	-0.053	0.0	10.0	0.0	0.0	11.8	0.0	0.00	0.03	0.00	0.00	0.07	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1698	-	12	64.9	46.7	55.6	58.2	62.2	50.4	0.188	-0.247	-0.016	0.043	0.132	-0.148	93.4	93.3	78.5	87.3	99.5	75.5	0.69	0.50	0.71	0.67	0.62	0.67	0.850725	1.000000	-
Rv1699	pyrG	34	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1700	-	10	12.8	23.0	17.5	14.2	17.0	17.4	-0.304	0.352	0.033	-0.193	-0.001	0.024	32.0	46.1	35.0	42.7	37.7	31.5	0.40	0.50	0.50	0.33	0.45	0.55	0.856704	1.000000	-
Rv1701	xerD	13	97.4	116.0	114.4	122.5	105.6	129.1	-0.219	0.022	0.003	0.097	-0.107	0.171	115.1	125.6	141.7	136.5	124.8	139.9	0.85	0.92	0.81	0.90	0.85	0.92	0.941743	1.000000	-
Rv1702c	-	20	78.9	73.1	73.6	81.8	74.4	81.8	0.029	-0.075	-0.066	0.078	-0.051	0.077	96.6	83.5	95.0	92.6	90.2	83.9	0.82	0.88	0.78	0.88	0.82	0.97	0.587128	1.000000	-
Rv1703c	-	11	119.6	133.8	117.1	105.9	121.4	122.8	-0.006	0.150	-0.035	-0.174	0.015	0.030	151.8	226.5	151.5	124.8	166.9	150.1	0.79	0.59	0.77	0.85	0.73	0.82	0.428309	1.000000	-
Rv1704c	cycA	18	111.2	117.1	114.7	112.5	111.0	130.2	-0.060	0.012	-0.017	-0.044	-0.062	0.159	153.9	145.4	158.8	151.9	137.8	151.2	0.72	0.81	0.72	0.74	0.81	0.86	0.994426	1.000000	-
Rv1705c	PPE22	23	99.4	102.2	97.9	105.0	120.6	108.9	-0.084	-0.046	-0.105	-0.008	0.183	0.041	129.4	134.3	125.0	129.4	142.2	122.1	0.77	0.76	0.78	0.81	0.85	0.89	0.919275	1.000000	-
Rv1706c	PPE23	18	113.2	138.7	98.9	103.8	104.9	100.9	0.038	0.321	-0.147	-0.081	-0.066	-0.120	197.2	208.1	209.5	180.8	151.1	158.0	0.57	0.67	0.47	0.57	0.69	0.64	0.945682	1.000000	-
Rv1706A	-	1	0.0	10.2	21.8	0.0	19.0	14.8	-1.674	-0.070	0.748	-1.674	0.586	0.311	0.0	10.2	21.8	0.0	19.0	14.8	0.00	1.00	1.00	0.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1707	-	19	183.1	178.5	172.5	140.1	150.1	169.0	0.141	0.105	0.058	-0.233	-0.137	0.029	189.8	193.8	177.2	150.7	158.5	169.0	0.96	0.92	0.97	0.93	0.95	1.00	0.616738	1.000000	-
Rv1708	-	16	7.3	12.7	11.0	0.8	3.7	8.6	-0.007	0.518	0.371	-1.078	-0.510	0.144	23.3	18.4	27.0	20.4	23.5	15.4	0.31	0.69	0.41	0.04	0.16	0.56	0.000000	0.000000	-
Rv1709	-	11	120.1	131.8	106.9	98.5	102.6	127.3	0.065	0.195	-0.095	-0.208	-0.151	0.146	123.8	131.8	112.0	101.5	102.6	127.3	0.97	1.00	0.95	0.97	1.00	1.00	0.851940	1.000000	-
Rv1710	-	13	106.5	95.8	109.7	67.4	90.6	78.0	0.211	0.065	0.251	-0.411	-0.010	-0.215	143.2	131.0	142.6	114.3	124.0	112.7	0.74	0.73	0.77	0.59	0.73	0.69	0.847986	1.000000	-
Rv1711	-	9	5.4	8.0	7.6	6.9	13.1	13.3	-0.432	-0.111	-0.153	-0.244	0.367	0.377	18.3	24.0	19.7	23.2	33.8	21.7	0.30	0.33	0.39	0.30	0.39	0.61	0.224158	1.000000	-
Rv1712	cmk	11	31.9	14.0	30.7	61.1	49.0	20.7	-0.099	-1.061	-0.148	0.740	0.448	-0.623	87.8	30.7	61.4	126.0	107.7	41.4	0.36	0.45	0.50	0.48	0.45	0.50	0.089213	0.696425	-
Rv1713	engA	11	0.4	0.5	0.0	0.0	0.0	0.4	0.040	0.067	-0.058	-0.058	-0.058	0.060	11.6	10.0	0.0	0.0	0.0	9.4	0.03	0.05	0.00	0.00	0.00	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1714	-	6	45.4	60.2	54.2	50.1	62.7	80.6	-0.341	0.031	-0.110	-0.213	0.084	0.422	74.4	72.3	72.3	60.1	68.4	87.9	0.61	0.83	0.75	0.83	0.92	0.92	0.719613	1.000000	-
Rv1715	fadB3	9	66.2	39.8	56.6	63.9	45.5	58.5	0.245	-0.423	0.037	0.198	-0.251	0.079	77.7	65.2	85.0	86.3	51.2	70.2	0.85	0.61	0.67	0.74	0.89	0.83	0.443974	1.000000	-
Rv1716	-	11	40.4	54.7	53.2	64.7	44.4	57.0	-0.338	0.058	0.021	0.279	-0.217	0.111	70.2	86.0	90.1	88.9	57.4	62.7	0.58	0.64	0.59	0.73	0.77	0.91	0.394401	1.000000	-
Rv1717	-	4	197.4	215.1	228.2	195.9	239.6	183.1	-0.086	0.034	0.118	-0.097	0.187	-0.192	197.4	215.1	228.2	195.9	239.6	183.1	1.00	1.00	1.00	1.00	1.00	1.00	0.919349	1.000000	-
Rv1718	-	7	130.9	171.9	179.4	146.6	147.3	126.1	-0.193	0.187	0.247	-0.035	-0.029	-0.245	152.7	171.9	179.4	154.0	147.3	126.1	0.86	1.00	1.00	0.95	1.00	1.00	0.576639	1.000000	-
Rv1719	-	6	124.4	133.2	143.1	103.0	116.3	134.4	-0.015	0.080	0.180	-0.276	-0.108	0.092	124.4	133.2	143.1	103.0	116.3	134.4	1.00	1.00	1.00	1.00	1.00	1.00	0.938850	1.000000	-
Rv1720c	-	9	21.4	20.9	20.1	19.7	22.2	27.7	-0.030	-0.059	-0.103	-0.131	0.009	0.275	38.6	23.5	27.9	26.5	24.9	33.2	0.56	0.89	0.72	0.74	0.89	0.83	0.166625	0.996892	-
Rv1721c	-	2	176.7	134.8	186.4	203.7	144.4	241.2	-0.035	-0.413	0.040	0.165	-0.318	0.403	176.7	134.8	186.4	203.7	144.4	241.2	1.00	1.00	1.00	1.00	1.00	1.00	0.855738	1.000000	-
Rv1722	-	22	249.2	265.9	237.5	237.0	247.2	252.4	0.006	0.098	-0.062	-0.065	-0.006	0.023	257.0	278.6	261.3	252.3	247.2	264.4	0.97	0.95	0.91	0.94	1.00	0.95	0.695307	1.000000	-
Rv1723	-	16	264.3	225.9	218.0	246.4	238.5	226.9	0.156	-0.066	-0.116	0.057	0.011	-0.060	281.9	241.0	225.0	281.6	238.5	259.3	0.94	0.94	0.97	0.88	1.00	0.88	0.375188	1.000000	-
Rv1724c	-	11	143.0	155.5	151.1	138.9	151.3	151.1	-0.053	0.065	0.024	-0.093	0.026	0.025	168.5	180.1	184.7	158.0	166.5	166.2	0.85	0.86	0.82	0.88	0.91	0.91	0.999240	1.000000	-
Rv1725c	-	9	140.6	137.8	139.7	148.6	143.6	163.0	-0.049	-0.076	-0.057	0.029	-0.019	0.158	158.2	137.8	148.0	148.6	172.3	172.6	0.89	1.00	0.94	1.00	0.83	0.94	0.430462	1.000000	-
Rv1726	-	15	100.9	112.4	98.4	93.0	90.8	82.2	0.065	0.213	0.030	-0.048	-0.080	-0.216	141.9	134.9	134.2	130.8	113.5	102.8	0.71	0.83	0.73	0.71	0.80	0.80	0.984660	1.000000	-
Rv1727	-	4	262.5	239.6	196.1	189.6	180.7	256.2	0.245	0.116	-0.167	-0.214	-0.282	0.210	350.0	319.5	261.5	252.8	180.7	256.2	0.75	0.75	0.75	0.75	1.00	1.00	0.739745	1.000000	-
Rv1728c	-	17	47.4	53.1	66.4	58.6	69.3	57.3	-0.281	-0.132	0.164	-0.003	0.223	-0.031	78.0	64.5	94.0	99.5	102.5	84.7	0.61	0.82	0.71	0.59	0.68	0.68	0.391232	1.000000	-
Rv1729c	-	21	65.4	52.5	55.2	65.5	75.6	66.9	0.040	-0.253	-0.187	0.042	0.234	0.069	98.1	73.5	82.7	96.0	99.2	90.6	0.67	0.71	0.67	0.68	0.76	0.74	0.933198	1.000000	-
Rv1730c	-	29	25.9	18.9	37.8	20.7	23.2	26.3	0.020	-0.348	0.490	-0.248	-0.112	0.040	46.9	35.4	46.6	41.8	39.6	42.4	0.55	0.53	0.81	0.49	0.59	0.62	0.008704	0.125375	-
Rv1731	gabD2	23	114.6	89.8	99.6	80.5	95.8	70.6	0.305	-0.030	0.111	-0.179	0.058	-0.357	129.6	98.4	111.7	91.1	102.5	77.3	0.88	0.91	0.89	0.88	0.93	0.91	0.360546	1.000000	-
Rv1732c	-	8	66.2	87.6	104.2	79.1	75.5	101.2	-0.348	0.031	0.269	-0.107	-0.172	0.228	66.2	87.6	104.2	79.1	75.5	101.2	1.00	1.00	1.00	1.00	1.00	1.00	0.243150	1.000000	-
Rv1733c	-	5	38.7	47.0	59.9	58.3	61.8	49.8	-0.397	-0.148	0.172	0.136	0.215	-0.070	41.5	52.2	66.5	58.3	61.8	49.8	0.93	0.90	0.90	1.00	1.00	1.00	0.790074	1.000000	-
Rv1734c	-	2	143.1	308.8	229.4	151.3	195.6	94.8	-0.376	0.707	0.287	-0.298	0.062	-0.945	143.1	308.8	229.4	151.3	195.6	94.8	1.00	1.00	1.00	1.00	1.00	1.00	0.252141	1.000000	-
Rv1735c	-	6	88.1	54.4	71.9	59.2	76.1	86.8	0.260	-0.388	-0.016	-0.276	0.061	0.240	88.1	65.3	86.3	71.1	76.1	86.8	1.00	0.83	0.83	0.83	1.00	1.00	0.365117	1.000000	-
Rv1736c	narX	37	133.6	111.7	112.8	116.5	116.6	108.2	0.189	-0.059	-0.045	-0.001	-0.000	-0.103	151.3	127.1	126.5	128.1	130.7	119.5	0.88	0.88	0.89	0.91	0.89	0.91	0.970581	1.000000	-
Rv1737c	narK2	13	157.2	153.5	159.5	145.0	143.3	134.5	0.076	0.043	0.096	-0.036	-0.053	-0.141	157.2	153.5	165.8	145.0	143.3	139.9	1.00	1.00	0.96	1.00	1.00	0.96	0.868087	1.000000	-
Rv1738	-	2	31.0	17.6	10.9	32.1	23.5	12.8	0.452	-0.217	-0.728	0.496	0.112	-0.563	31.0	17.6	21.8	32.1	23.5	12.8	1.00	1.00	0.50	1.00	1.00	1.00	0.059675	0.536273	-
Rv1739c	-	36	120.4	94.2	104.9	119.7	96.3	96.4	0.185	-0.153	-0.006	0.177	-0.123	-0.121	132.7	104.4	111.0	124.3	99.0	105.2	0.91	0.90	0.94	0.96	0.97	0.92	0.259890	1.000000	-
Rv1740	-	4	134.7	132.4	117.8	138.0	129.6	93.3	0.111	0.087	-0.074	0.145	0.058	-0.396	134.7	132.4	117.8	138.0	129.6	106.6	1.00	1.00	1.00	1.00	1.00	0.88	0.901144	1.000000	-
Rv1741	-	6	146.4	192.9	160.9	172.6	196.0	152.3	-0.210	0.176	-0.079	0.020	0.199	-0.156	146.4	192.9	160.9	172.6	196.0	152.3	1.00	1.00	1.00	1.00	1.00	1.00	0.890360	1.000000	-
Rv1742	-	13	211.2	213.0	196.6	211.2	226.4	166.2	0.048	0.060	-0.053	0.048	0.146	-0.288	249.6	230.7	243.4	228.7	226.4	180.1	0.85	0.92	0.81	0.92	1.00	0.92	0.533588	1.000000	-
Rv1743	pknE	29	199.4	197.3	190.3	200.5	195.4	182.9	0.036	0.021	-0.029	0.044	0.008	-0.085	225.2	228.8	212.2	210.2	222.2	196.5	0.89	0.86	0.90	0.95	0.88	0.93	0.757267	1.000000	-
Rv1744c	-	5	301.1	215.9	237.9	281.1	214.1	216.8	0.295	-0.176	-0.039	0.198	-0.187	-0.170	376.4	215.9	339.8	281.1	237.9	216.8	0.80	1.00	0.70	1.00	0.90	1.00	0.338672	1.000000	-
Rv1745c	idi	11	29.5	18.5	31.5	29.7	29.1	32.1	0.047	-0.508	0.129	0.055	0.030	0.150	65.0	31.3	49.6	54.5	40.1	44.1	0.45	0.59	0.64	0.55	0.73	0.73	0.341544	1.000000	-
Rv1746	pknF	13	68.0	120.6	87.5	101.3	88.2	92.0	-0.423	0.359	-0.082	0.118	-0.071	-0.014	94.8	142.5	113.8	119.7	99.7	104.0	0.72	0.85	0.77	0.85	0.88	0.88	0.764079	1.000000	-
Rv1747	-	29	161.3	182.2	171.4	177.6	216.9	165.3	-0.147	0.024	-0.062	-0.012	0.269	-0.113	187.1	207.2	194.9	203.3	241.9	195.6	0.86	0.88	0.88	0.87	0.90	0.84	0.829220	1.000000	-
Rv1748	-	12	110.7	136.2	127.8	112.2	101.6	130.1	-0.109	0.179	0.090	-0.091	-0.227	0.115	110.7	148.6	153.3	134.6	122.0	142.0	1.00	0.92	0.83	0.83	0.83	0.92	0.085835	0.684368	-
Rv1749c	-	16	117.1	137.2	113.9	134.2	113.6	140.2	-0.102	0.118	-0.140	0.088	-0.144	0.148	137.1	146.4	121.5	143.2	117.2	140.2	0.85	0.94	0.94	0.94	0.97	1.00	0.504988	1.000000	-
Rv1750c	fadD1	36	105.1	102.6	104.0	101.3	88.0	111.5	0.040	0.007	0.025	-0.010	-0.203	0.122	136.8	129.6	138.6	124.3	103.9	133.8	0.77	0.79	0.75	0.81	0.85	0.83	0.968443	1.000000	-
Rv1751	-	19	67.2	57.6	77.3	71.5	76.1	71.5	-0.059	-0.264	0.131	0.025	0.108	0.025	85.1	62.6	89.1	76.9	85.0	82.3	0.79	0.92	0.87	0.93	0.89	0.87	0.535165	1.000000	-
Rv1752	-	4	98.7	52.2	70.8	76.4	77.6	51.9	0.443	-0.414	-0.009	0.094	0.114	-0.422	118.4	52.2	80.9	83.4	77.6	51.9	0.83	1.00	0.88	0.92	1.00	1.00	0.181510	1.000000	-
Rv1753c	PPE24	61	27.1	27.9	30.7	23.2	23.8	26.4	0.028	0.061	0.180	-0.161	-0.128	-0.007	75.2	64.2	87.1	64.3	54.9	48.8	0.36	0.43	0.35	0.36	0.43	0.54	0.131273	0.871510	-
Rv1754c	-	33	122.1	107.5	117.1	111.1	111.2	116.6	0.091	-0.084	0.034	-0.039	-0.038	0.028	143.9	124.5	133.3	120.8	128.7	126.2	0.85	0.86	0.88	0.92	0.86	0.92	0.892725	1.000000	-
Rv1755c	plcD	16	18.5	11.2	13.1	16.3	14.7	9.2	0.318	-0.219	-0.058	0.177	0.066	-0.403	98.5	59.6	69.8	86.9	78.5	49.3	0.19	0.19	0.19	0.19	0.19	0.19	0.964292	1.000000	-
Rv1756c	-	21	297.2	292.5	316.6	306.7	274.8	290.2	0.004	-0.019	0.094	0.049	-0.107	-0.030	390.1	361.3	391.1	378.8	349.7	320.7	0.76	0.81	0.81	0.81	0.79	0.90	0.969687	1.000000	-
Rv1757c	-	4	240.4	251.9	228.8	254.2	246.0	177.9	0.043	0.109	-0.027	0.122	0.075	-0.381	240.4	251.9	228.8	254.2	246.0	177.9	1.00	1.00	1.00	1.00	1.00	1.00	0.877969	1.000000	-
Rv1758	cut1	11	267.5	268.0	249.2	244.2	223.6	209.5	0.132	0.135	0.032	0.003	-0.121	-0.213	275.9	280.8	249.2	260.0	223.6	219.5	0.97	0.95	1.00	0.94	1.00	0.95	0.999938	1.000000	-
Rv1759c	wag22	23	145.1	139.4	131.6	137.5	129.8	116.8	0.117	0.062	-0.018	0.042	-0.038	-0.184	188.9	183.2	172.9	175.6	157.1	137.7	0.77	0.76	0.76	0.78	0.83	0.85	0.955293	1.000000	-
Rv1760	-	26	101.2	103.7	127.7	107.9	107.3	118.0	-0.127	-0.093	0.194	-0.039	-0.046	0.085	116.1	117.2	150.9	116.9	118.8	127.9	0.87	0.88	0.85	0.92	0.90	0.92	0.915153	1.000000	-
Rv1761c	-	4	104.0	110.8	85.2	91.4	106.9	113.5	0.027	0.115	-0.246	-0.150	0.065	0.147	138.7	110.8	85.2	121.9	142.5	113.5	0.75	1.00	1.00	0.75	0.75	1.00	0.104482	0.756025	-
Rv1762c	-	9	179.6	153.6	183.1	161.6	184.3	188.5	0.035	-0.184	0.062	-0.112	0.072	0.103	179.6	172.8	219.7	181.8	207.4	212.0	1.00	0.89	0.83	0.89	0.89	0.89	0.412769	1.000000	-
Rv1763	-	4	199.7	262.7	241.4	257.3	242.5	164.8	-0.187	0.200	0.080	0.171	0.087	-0.457	199.7	262.7	241.4	257.3	242.5	164.8	1.00	1.00	1.00	1.00	1.00	1.00	0.538152	1.000000	-
Rv1764	-	21	298.8	289.8	317.6	298.5	288.7	289.2	0.008	-0.035	0.095	0.007	-0.041	-0.038	384.2	338.1	416.8	376.2	356.6	347.0	0.78	0.86	0.76	0.79	0.81	0.83	0.999066	1.000000	-
Rv1765c	-	6	79.9	102.1	82.7	87.7	75.6	90.2	-0.106	0.229	-0.059	0.021	-0.180	0.059	79.9	102.1	82.7	87.7	75.6	90.2	1.00	1.00	1.00	1.00	1.00	1.00	0.837939	1.000000	-
Rv1765A	-	3	64.4	84.7	81.3	69.6	62.6	74.1	-0.164	0.206	0.150	-0.060	-0.202	0.024	96.6	101.6	121.9	89.5	93.9	111.1	0.67	0.83	0.67	0.78	0.67	0.67	0.997316	1.000000	-
Rv1766	-	3	123.0	133.3	132.5	119.8	113.4	122.9	-0.013	0.099	0.090	-0.050	-0.126	-0.014	184.5	200.0	198.7	134.8	170.1	147.5	0.67	0.67	0.67	0.89	0.67	0.83	0.969411	1.000000	-
Rv1767	-	7	210.7	194.0	143.6	193.3	174.1	149.4	0.241	0.125	-0.297	0.120	-0.027	-0.241	232.8	194.0	143.6	225.6	174.1	174.4	0.90	1.00	1.00	0.86	1.00	0.86	0.338572	1.000000	-
Rv1768	PE_PGRS31	17	136.0	132.3	165.0	151.0	168.8	136.1	-0.119	-0.158	0.150	0.026	0.182	-0.119	147.6	140.5	180.9	163.8	179.3	136.1	0.92	0.94	0.91	0.92	0.94	1.00	0.632368	1.000000	-
Rv1769	-	20	173.0	161.9	170.7	188.1	190.2	155.5	-0.002	-0.095	-0.021	0.115	0.131	-0.151	185.4	161.9	189.6	201.5	200.2	163.6	0.93	1.00	0.90	0.93	0.95	0.95	0.641579	1.000000	-
Rv1770	-	16	307.0	283.4	295.8	337.0	339.5	339.9	-0.046	-0.160	-0.099	0.087	0.097	0.099	368.4	377.9	350.5	414.8	417.9	388.5	0.83	0.75	0.84	0.81	0.81	0.88	0.878263	1.000000	-
Rv1771	-	22	179.1	188.6	173.2	178.0	181.2	182.4	-0.011	0.062	-0.057	-0.019	0.006	0.015	184.6	197.6	177.3	186.5	181.2	191.1	0.97	0.95	0.98	0.95	1.00	0.95	0.804837	1.000000	-
Rv1772	-	4	16.4	27.0	15.6	17.4	31.4	24.3	-0.336	0.245	-0.390	-0.272	0.429	0.118	32.8	72.1	41.7	34.8	62.8	97.3	0.50	0.38	0.38	0.50	0.50	0.25	0.560197	1.000000	-
Rv1773c	-	10	83.9	76.5	66.9	95.8	79.1	69.5	0.088	-0.037	-0.217	0.270	0.008	-0.167	100.7	85.0	74.4	106.5	93.1	81.8	0.83	0.90	0.90	0.90	0.85	0.85	0.927488	1.000000	-
Rv1774	-	27	112.2	125.7	117.6	120.0	128.3	127.3	-0.114	0.044	-0.050	-0.021	0.071	0.061	121.1	144.5	127.0	129.6	135.8	132.2	0.93	0.87	0.93	0.93	0.94	0.96	0.777144	1.000000	-
Rv1775	-	12	87.3	92.8	128.8	127.1	104.5	100.8	-0.277	-0.194	0.258	0.239	-0.032	-0.081	108.4	101.3	140.6	143.0	109.0	109.9	0.81	0.92	0.92	0.89	0.96	0.92	0.779294	1.000000	-
Rv1776c	-	11	82.1	76.0	96.7	87.3	82.7	76.9	-0.025	-0.129	0.199	0.058	-0.014	-0.114	123.1	119.5	118.2	120.0	101.1	112.7	0.67	0.64	0.82	0.73	0.82	0.68	0.936959	1.000000	-
Rv1777	cyp144	23	93.4	93.4	108.1	97.7	89.3	75.9	0.006	0.006	0.207	0.069	-0.055	-0.276	109.2	110.1	127.5	118.3	102.6	91.9	0.86	0.85	0.85	0.83	0.87	0.83	0.965296	1.000000	-
Rv1778c	-	5	38.0	30.6	52.7	35.2	42.2	62.8	-0.177	-0.448	0.248	-0.271	-0.041	0.480	47.5	30.6	58.5	37.8	46.9	62.8	0.80	1.00	0.90	0.93	0.90	1.00	0.148991	0.944275	-
Rv1779c	-	12	131.0	129.3	144.2	127.9	150.6	118.0	-0.026	-0.045	0.107	-0.059	0.168	-0.171	162.6	155.1	216.2	184.2	172.1	149.0	0.81	0.83	0.67	0.69	0.88	0.79	0.829000	1.000000	-
Rv1780	-	9	106.3	155.1	115.1	131.2	134.2	123.1	-0.251	0.273	-0.142	0.040	0.071	-0.049	119.6	155.1	129.4	147.6	151.0	130.3	0.89	1.00	0.89	0.89	0.89	0.94	0.710178	1.000000	-
Rv1781c	malQ	25	154.9	155.5	135.6	151.6	146.2	137.6	0.074	0.079	-0.111	0.044	-0.007	-0.091	159.2	155.5	138.4	160.2	149.2	137.6	0.97	1.00	0.98	0.95	0.98	1.00	0.576531	1.000000	-
Rv1782	-	16	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1783	-	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1784	-	38	0.0	0.1	0.0	0.0	0.0	0.0	-0.007	0.032	-0.007	-0.007	-0.007	-0.007	0.0	10.4	0.0	0.0	0.0	0.0	0.00	0.01	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1785c	cyp143	16	102.6	73.7	90.7	81.7	95.0	84.6	0.210	-0.242	0.040	-0.102	0.105	-0.055	126.3	87.3	116.0	106.0	98.1	100.2	0.81	0.84	0.78	0.77	0.97	0.84	0.573648	1.000000	-
Rv1786	-	1	117.3	95.8	106.7	126.2	133.6	124.9	-0.001	-0.280	-0.132	0.100	0.179	0.085	117.3	95.8	106.7	126.2	133.6	124.9	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1787	PPE25	15	420.5	410.5	399.9	386.0	351.9	353.5	0.118	0.084	0.046	-0.004	-0.136	-0.129	450.6	410.5	413.7	413.6	377.0	365.7	0.93	1.00	0.97	0.93	0.93	0.97	0.988393	1.000000	-
Rv1788	PE18	4	296.8	324.5	202.5	238.1	216.1	260.8	0.207	0.334	-0.334	-0.105	-0.242	0.024	296.8	324.5	202.5	238.1	216.1	260.8	1.00	1.00	1.00	1.00	1.00	1.00	0.622816	1.000000	-
Rv1789	PPE26	18	156.6	134.0	131.5	134.9	122.8	124.9	0.216	-0.002	-0.027	0.008	-0.122	-0.099	176.2	166.3	169.1	151.8	130.0	140.5	0.89	0.81	0.78	0.89	0.94	0.89	0.779293	1.000000	-
Rv1790	PPE27	15	440.7	402.0	433.6	410.9	366.3	350.0	0.136	0.005	0.113	0.036	-0.127	-0.192	450.7	402.0	448.5	410.9	366.3	350.0	0.98	1.00	0.97	1.00	1.00	1.00	0.999865	1.000000	-
Rv1791	PE19	6	66.1	61.9	63.6	68.3	89.1	58.3	-0.035	-0.124	-0.088	0.008	0.369	-0.203	66.1	61.9	63.6	68.3	89.1	58.3	1.00	1.00	1.00	1.00	1.00	1.00	0.442668	1.000000	-
Rv1793	esxN	3	106.2	146.4	124.1	124.0	140.5	171.1	-0.336	0.109	-0.121	-0.122	0.052	0.327	119.4	146.4	124.1	124.0	140.5	171.1	0.89	1.00	1.00	1.00	1.00	1.00	0.756331	1.000000	-
Rv1794	-	18	0.0	0.0	0.0	0.0	0.0	0.3	-0.013	-0.013	-0.013	-0.013	-0.013	0.061	0.0	0.0	0.0	0.0	0.0	9.4	0.00	0.00	0.00	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1795	-	18	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1796	mycP5	29	0.0	0.0	0.0	0.2	0.0	0.2	-0.017	-0.017	-0.017	0.031	-0.017	0.036	0.0	0.0	0.0	14.8	0.0	10.8	0.00	0.00	0.00	0.01	0.00	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1797	-	15	0.5	0.0	0.0	0.0	0.0	0.0	0.114	-0.024	-0.024	-0.024	-0.024	-0.024	22.6	0.0	0.0	0.0	0.0	0.0	0.02	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1798	-	30	18.3	18.3	19.9	9.4	4.8	12.9	0.300	0.299	0.395	-0.397	-0.944	-0.083	29.5	27.5	37.3	25.6	15.3	19.3	0.62	0.67	0.53	0.37	0.32	0.67	0.000000	0.000000	-
Rv1799	lppT	2	47.9	61.7	54.8	78.0	90.3	98.1	-0.537	-0.202	-0.361	0.112	0.311	0.425	57.5	61.7	54.8	78.0	90.3	98.1	0.83	1.00	1.00	1.00	1.00	1.00	0.746349	1.000000	-
Rv1800	PPE28	39	81.5	83.0	76.2	78.2	84.0	74.1	0.033	0.059	-0.057	-0.023	0.075	-0.095	138.2	137.8	135.1	138.6	133.8	131.4	0.59	0.60	0.56	0.56	0.63	0.56	0.996808	1.000000	-
Rv1801	PPE29	21	77.3	80.5	75.4	91.6	87.9	75.2	-0.069	-0.013	-0.103	0.163	0.106	-0.106	85.4	89.0	87.9	99.5	90.0	78.9	0.90	0.90	0.86	0.92	0.98	0.95	0.798958	1.000000	-
Rv1802	PPE30	18	188.5	186.2	186.5	182.6	154.5	179.4	0.068	0.051	0.053	0.023	-0.211	-0.001	212.1	209.5	209.8	205.4	168.5	201.9	0.89	0.89	0.89	0.89	0.92	0.89	0.999131	1.000000	-
Rv1803c	PE_PGRS32	30	120.7	130.8	133.0	114.7	120.6	124.1	-0.038	0.075	0.098	-0.107	-0.038	0.001	155.1	160.2	159.6	145.4	144.8	148.9	0.78	0.82	0.83	0.79	0.83	0.83	0.998971	1.000000	-
Rv1804c	-	9	85.0	83.9	84.1	92.0	71.3	90.5	0.009	-0.009	-0.006	0.117	-0.230	0.093	85.0	83.9	84.1	103.5	71.3	101.8	1.00	1.00	1.00	0.89	1.00	0.89	0.148229	0.943279	-
Rv1805c	-	5	19.9	12.2	16.8	26.1	19.7	11.3	0.137	-0.401	-0.054	0.457	0.121	-0.473	29.9	20.3	33.7	35.6	24.6	16.2	0.67	0.60	0.50	0.73	0.80	0.70	0.266365	1.000000	-
Rv1806	PE20	5	36.5	33.0	61.8	48.8	32.3	22.7	-0.090	-0.217	0.597	0.285	-0.244	-0.676	45.6	66.0	88.3	66.6	40.4	56.6	0.80	0.50	0.70	0.73	0.80	0.40	0.125497	0.843132	-
Rv1807	PPE31	17	63.5	87.2	74.9	105.1	102.2	71.6	-0.379	0.049	-0.157	0.306	0.267	-0.217	72.0	98.8	84.9	114.1	115.8	90.2	0.88	0.88	0.88	0.92	0.88	0.79	0.072132	0.609758	-
Rv1808	PPE32	25	270.5	226.3	245.2	241.4	237.8	227.0	0.161	-0.091	0.022	0.000	-0.021	-0.087	289.8	257.1	266.5	255.0	270.3	231.6	0.93	0.88	0.92	0.95	0.88	0.98	0.671277	1.000000	-
Rv1809	PPE33	20	103.2	86.7	91.4	97.1	107.6	86.1	0.108	-0.130	-0.057	0.024	0.166	-0.140	126.3	108.4	126.1	132.4	130.4	118.7	0.82	0.80	0.72	0.73	0.82	0.72	0.916478	1.000000	-
Rv1810	-	11	137.0	121.2	138.5	129.2	133.0	116.7	0.081	-0.089	0.096	-0.001	0.040	-0.142	161.5	140.4	169.2	147.0	146.3	122.2	0.85	0.86	0.82	0.88	0.91	0.95	0.987457	1.000000	-
Rv1811	mgtC	15	259.0	288.4	282.4	289.6	266.9	287.7	-0.105	0.047	0.017	0.053	-0.063	0.043	259.0	288.4	282.4	289.6	266.9	287.7	1.00	1.00	1.00	1.00	1.00	1.00	0.990181	1.000000	-
Rv1812c	-	22	184.1	159.1	177.0	160.4	171.7	168.1	0.111	-0.094	0.056	-0.082	0.014	-0.016	213.1	170.7	199.7	185.7	193.8	184.9	0.86	0.93	0.89	0.86	0.89	0.91	0.995803	1.000000	-
Rv1813c	-	9	105.5	135.5	139.8	121.3	122.3	152.3	-0.283	0.063	0.107	-0.090	-0.079	0.227	113.9	135.5	139.8	121.3	122.3	152.3	0.93	1.00	1.00	1.00	1.00	1.00	0.353447	1.000000	-
Rv1814	erg3	21	110.1	99.1	98.4	96.0	100.2	118.9	0.081	-0.063	-0.074	-0.107	-0.048	0.188	133.4	106.7	108.7	109.9	110.7	131.5	0.83	0.93	0.90	0.87	0.90	0.90	0.896291	1.000000	-
Rv1815	-	7	66.4	97.5	76.9	72.4	49.8	70.1	-0.113	0.410	0.086	0.005	-0.495	-0.040	126.8	170.7	215.4	138.3	63.3	89.2	0.52	0.57	0.36	0.52	0.79	0.79	0.192186	1.000000	-
Rv1816	-	15	191.7	169.3	169.7	163.9	139.3	165.9	0.197	0.023	0.025	-0.023	-0.250	-0.006	221.2	195.4	181.8	167.6	149.2	177.7	0.87	0.87	0.93	0.98	0.93	0.93	0.723368	1.000000	-
Rv1817	-	26	124.4	119.5	123.8	115.3	123.4	137.1	0.006	-0.051	-0.001	-0.100	-0.006	0.141	134.8	132.2	140.0	119.9	125.8	137.1	0.92	0.90	0.88	0.96	0.98	1.00	0.293803	1.000000	-
Rv1818c	PE_PGRS33	11	268.8	226.2	253.7	237.8	212.5	239.0	0.162	-0.082	0.080	-0.011	-0.169	-0.004	328.5	248.8	293.7	290.7	246.1	262.8	0.82	0.91	0.86	0.82	0.86	0.91	0.994643	1.000000	-
Rv1819c	-	29	176.5	166.5	160.9	186.3	175.3	162.9	0.041	-0.041	-0.089	0.117	0.031	-0.071	189.6	169.4	176.0	188.5	178.4	171.8	0.93	0.98	0.91	0.99	0.98	0.95	0.621355	1.000000	-
Rv1820	ilvG	16	230.9	213.1	227.3	216.3	206.4	223.3	0.071	-0.042	0.049	-0.021	-0.087	0.024	240.9	235.2	250.8	216.3	220.2	230.5	0.96	0.91	0.91	1.00	0.94	0.97	0.668222	1.000000	-
Rv1821	secA2	36	51.5	122.5	75.4	150.5	157.5	67.5	-0.950	0.224	-0.441	0.511	0.574	-0.590	65.4	139.9	92.0	156.3	166.8	72.6	0.79	0.88	0.82	0.96	0.94	0.93	0.000000	0.000000	-
Rv1822	pgsA2	17	3.9	4.5	5.1	2.7	4.9	6.1	-0.100	-0.010	0.088	-0.308	0.052	0.221	66.2	75.9	87.1	45.9	83.0	103.9	0.06	0.06	0.06	0.06	0.06	0.06	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1823	-	14	92.1	128.3	94.5	104.5	110.3	101.9	-0.184	0.274	-0.148	-0.010	0.065	-0.045	107.4	138.2	115.0	118.6	123.6	109.7	0.86	0.93	0.82	0.88	0.89	0.93	0.890172	1.000000	-
Rv1824	-	4	97.3	81.5	70.2	71.2	72.0	103.1	0.225	-0.017	-0.219	-0.201	-0.186	0.305	97.3	81.5	70.2	71.2	72.0	103.1	1.00	1.00	1.00	1.00	1.00	1.00	0.842027	1.000000	-
Rv1825	-	9	92.6	93.8	103.8	76.8	79.2	84.7	0.062	0.080	0.219	-0.193	-0.151	-0.060	100.0	93.8	116.8	76.8	79.2	84.7	0.93	1.00	0.89	1.00	1.00	1.00	0.433251	1.000000	-
Rv1826	gcvH	7	4.8	9.5	0.0	12.0	12.6	8.8	-0.407	0.162	-1.371	0.391	0.448	0.092	16.6	14.7	0.0	20.9	17.7	15.4	0.29	0.64	0.00	0.57	0.71	0.57	0.000661	0.013741	-
Rv1827	cfp17	6	0.6	0.0	0.0	1.6	0.0	0.0	0.070	-0.105	-0.105	0.300	-0.105	-0.105	11.6	0.0	0.0	14.6	0.0	0.0	0.06	0.00	0.00	0.11	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1828	-	13	8.2	0.4	7.7	0.0	0.0	0.0	0.776	-0.520	0.720	-0.627	-0.627	-0.627	24.7	10.0	28.7	0.0	0.0	0.0	0.33	0.04	0.27	0.00	0.00	0.00	0.000000	0.000000	-
Rv1829	-	9	68.3	106.7	112.4	110.8	126.3	100.1	-0.574	0.034	0.106	0.086	0.267	-0.054	80.2	106.7	119.0	110.8	142.0	112.6	0.85	1.00	0.94	1.00	0.89	0.89	0.046813	0.457386	-
Rv1830	-	10	3.4	5.1	10.3	15.6	8.4	3.2	-0.595	-0.329	0.276	0.701	0.082	-0.629	25.3	50.7	103.2	155.7	83.9	31.8	0.13	0.10	0.10	0.10	0.10	0.10	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv1831	-	5	117.6	126.5	119.5	160.2	141.2	139.9	-0.183	-0.081	-0.160	0.248	0.071	0.058	117.6	126.5	119.5	160.2	141.2	139.9	1.00	1.00	1.00	1.00	1.00	1.00	0.923930	1.000000	-
Rv1832	gcvB	50	9.6	24.8	4.6	38.5	29.8	21.5	-0.855	0.172	-1.465	0.717	0.394	0.001	28.4	33.6	38.3	50.3	42.6	27.9	0.34	0.74	0.12	0.77	0.70	0.77	0.000000	0.000000	-
Rv1833c	-	13	89.1	94.1	114.9	87.3	70.2	76.8	0.006	0.080	0.355	-0.023	-0.317	-0.196	105.3	101.9	135.8	94.5	91.3	90.8	0.85	0.92	0.85	0.92	0.77	0.85	0.680909	1.000000	-
Rv1834	-	10	187.8	213.9	202.4	171.6	163.6	150.6	0.047	0.230	0.152	-0.080	-0.147	-0.262	187.8	225.2	202.4	205.9	181.7	167.4	1.00	0.95	1.00	0.83	0.90	0.90	0.203442	1.000000	-
Rv1835c	-	34	297.1	249.7	286.6	255.9	257.6	258.6	0.148	-0.098	0.097	-0.063	-0.054	-0.048	309.2	257.2	299.8	271.9	261.4	270.6	0.96	0.97	0.96	0.94	0.99	0.96	0.972596	1.000000	-
Rv1836c	-	37	71.6	81.7	83.9	59.0	93.2	58.3	-0.056	0.123	0.159	-0.314	0.303	-0.331	95.7	97.5	103.5	72.0	113.1	70.7	0.75	0.84	0.81	0.82	0.82	0.82	0.032778	0.349696	-
Rv1837c	glcB	22	29.8	31.9	36.0	50.1	37.0	28.7	-0.221	-0.138	0.015	0.441	0.050	-0.269	53.2	54.0	72.1	84.9	60.4	48.6	0.56	0.59	0.50	0.59	0.61	0.59	0.167011	0.996892	-
Rv1838c	-	10	424.8	432.9	400.0	399.3	407.0	399.9	0.048	0.075	-0.037	-0.040	-0.013	-0.038	424.8	432.9	421.1	399.3	407.0	399.9	1.00	1.00	0.95	1.00	1.00	1.00	0.969837	1.000000	-
Rv1839c	-	1	239.4	193.0	318.3	252.7	224.4	191.5	0.017	-0.287	0.420	0.093	-0.075	-0.298	239.4	193.0	318.3	252.7	224.4	191.5	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1840c	PE_PGRS34	15	85.9	87.8	88.9	83.3	61.6	70.2	0.103	0.133	0.150	0.061	-0.344	-0.170	161.1	164.6	177.8	170.3	102.7	175.5	0.53	0.53	0.50	0.49	0.60	0.40	0.740076	1.000000	-
Rv1841c	-	13	213.7	171.7	192.0	175.6	200.1	186.6	0.166	-0.142	0.015	-0.110	0.073	-0.025	260.4	186.1	199.7	180.2	216.8	220.6	0.82	0.92	0.96	0.97	0.92	0.85	0.432292	1.000000	-
Rv1842c	-	15	174.2	180.7	157.7	166.6	150.0	147.5	0.095	0.146	-0.044	0.033	-0.115	-0.138	201.0	180.7	175.2	192.3	160.7	170.2	0.87	1.00	0.90	0.87	0.93	0.87	0.586910	1.000000	-
Rv1843c	guaB1	20	294.7	239.4	266.2	251.6	254.4	271.4	0.162	-0.133	0.017	-0.063	-0.047	0.045	315.7	252.0	287.8	274.5	282.7	285.7	0.93	0.95	0.93	0.92	0.90	0.95	0.993941	1.000000	-
Rv1844c	gnd1	14	228.1	234.9	228.9	221.2	216.4	217.5	0.022	0.064	0.028	-0.021	-0.052	-0.044	233.7	234.9	237.4	238.3	216.4	225.6	0.98	1.00	0.96	0.93	1.00	0.96	0.862391	1.000000	-
Rv1845c	-	13	484.1	350.2	261.2	5.0	6.6	348.9	0.982	0.520	0.104	-4.626	-4.418	0.515	484.1	350.2	282.9	21.8	21.4	348.9	1.00	1.00	0.92	0.23	0.31	1.00	0.000000	0.000000	-
Rv1846c	-	3	81.1	76.7	70.7	80.7	80.6	116.8	-0.055	-0.130	-0.240	-0.062	-0.063	0.445	81.1	76.7	84.9	80.7	80.6	116.8	1.00	1.00	0.83	1.00	1.00	1.00	0.649477	1.000000	-
Rv1847	-	5	229.5	223.4	236.7	244.2	208.6	266.4	-0.032	-0.070	0.011	0.056	-0.167	0.179	229.5	223.4	295.9	244.2	208.6	266.4	1.00	1.00	0.80	1.00	1.00	1.00	0.690146	1.000000	-
Rv1848	ureA	2	186.9	211.4	158.3	142.8	158.2	178.4	0.111	0.285	-0.121	-0.265	-0.123	0.046	186.9	211.4	158.3	142.8	158.2	178.4	1.00	1.00	1.00	1.00	1.00	1.00	0.933909	1.000000	-
Rv1849	ureB	6	64.2	71.4	80.9	69.2	67.2	58.3	-0.087	0.055	0.224	0.013	-0.026	-0.216	64.2	71.4	97.0	83.0	80.6	70.0	1.00	1.00	0.83	0.83	0.83	0.83	0.305928	1.000000	-
Rv1850	ureC	11	105.6	83.9	120.3	111.0	106.4	101.7	0.011	-0.305	0.190	0.079	0.020	-0.041	116.2	97.2	120.3	122.1	117.0	111.9	0.91	0.86	1.00	0.91	0.91	0.91	0.751463	1.000000	-
Rv1851	ureF	2	355.4	284.9	496.3	369.0	469.7	382.2	-0.143	-0.457	0.333	-0.089	0.254	-0.039	355.4	284.9	496.3	369.0	469.7	382.2	1.00	1.00	1.00	1.00	1.00	1.00	0.953312	1.000000	-
Rv1852	ureG	4	303.5	221.9	255.3	266.1	218.8	167.7	0.339	-0.104	0.094	0.153	-0.124	-0.498	404.7	253.6	255.3	290.2	218.8	223.5	0.75	0.88	1.00	0.92	1.00	0.75	0.591186	1.000000	-
Rv1853	ureD	5	45.4	27.6	28.1	50.7	50.0	44.7	0.129	-0.498	-0.477	0.274	0.255	0.109	61.9	39.5	46.8	63.4	50.0	55.9	0.73	0.70	0.60	0.80	1.00	0.80	0.359626	1.000000	-
Rv1854c	ndh	17	107.1	100.8	101.3	63.0	71.9	99.5	0.230	0.146	0.153	-0.492	-0.314	0.128	118.8	107.1	118.8	73.0	81.5	105.7	0.90	0.94	0.85	0.86	0.88	0.94	0.268224	1.000000	-
Rv1855c	-	11	208.5	212.8	192.8	226.1	226.0	221.5	-0.041	-0.012	-0.151	0.073	0.073	0.044	229.4	234.1	212.1	248.7	248.6	221.5	0.91	0.91	0.91	0.91	0.91	1.00	0.843982	1.000000	-
Rv1856c	-	4	407.4	403.9	239.6	455.7	393.1	363.9	0.110	0.097	-0.644	0.269	0.059	-0.051	407.4	403.9	239.6	455.7	393.1	363.9	1.00	1.00	1.00	1.00	1.00	1.00	0.648342	1.000000	-
Rv1857	modA	5	132.0	166.3	142.4	156.0	146.6	192.1	-0.232	0.091	-0.127	0.001	-0.086	0.293	132.0	166.3	142.4	156.0	146.6	192.1	1.00	1.00	1.00	1.00	1.00	1.00	0.860019	1.000000	-
Rv1858	modB	17	195.8	171.2	193.5	136.1	153.6	155.4	0.218	0.030	0.202	-0.291	-0.122	-0.106	203.8	171.2	205.6	141.7	153.6	155.4	0.96	1.00	0.94	0.96	1.00	1.00	0.299010	1.000000	-
Rv1859	modC	16	244.7	211.8	217.6	195.3	224.0	220.9	0.156	-0.048	-0.009	-0.161	0.032	0.012	249.9	211.8	224.6	195.3	224.0	220.9	0.98	1.00	0.97	1.00	1.00	1.00	0.884452	1.000000	-
Rv1860	apa	14	89.7	142.5	86.7	157.2	158.6	141.0	-0.504	0.136	-0.550	0.272	0.285	0.121	107.6	173.5	101.1	173.7	158.6	146.2	0.83	0.82	0.86	0.90	1.00	0.96	0.043358	0.434674	-
Rv1861	-	7	46.8	46.4	62.7	51.1	51.9	68.5	-0.202	-0.214	0.185	-0.087	-0.065	0.304	61.4	46.4	79.8	67.0	60.6	80.0	0.76	1.00	0.79	0.76	0.86	0.86	0.340062	1.000000	-
Rv1862	adhA	15	330.8	313.5	360.5	331.9	319.3	299.5	0.021	-0.055	0.143	0.026	-0.029	-0.120	372.1	313.5	386.3	364.3	342.1	320.9	0.89	1.00	0.93	0.91	0.93	0.93	0.828414	1.000000	-
Rv1863c	-	10	260.9	212.1	236.0	214.4	230.2	217.3	0.188	-0.105	0.046	-0.090	0.011	-0.071	279.6	223.2	262.2	268.0	230.2	241.5	0.93	0.95	0.90	0.80	1.00	0.90	0.658008	1.000000	-
Rv1864c	-	9	327.8	340.1	324.6	299.7	280.3	235.6	0.119	0.172	0.106	-0.008	-0.103	-0.349	327.8	340.1	324.6	299.7	280.3	235.6	1.00	1.00	1.00	1.00	1.00	1.00	0.671271	1.000000	-
Rv1865c	-	12	105.6	97.8	103.7	114.8	112.4	115.4	-0.035	-0.140	-0.060	0.081	0.051	0.088	122.6	130.4	118.5	133.3	134.8	138.5	0.86	0.75	0.88	0.86	0.83	0.83	0.890507	1.000000	-
Rv1866	-	32	93.2	86.7	97.8	107.1	99.7	91.9	-0.041	-0.140	0.025	0.149	0.051	-0.062	117.7	97.4	125.2	122.4	112.0	110.9	0.79	0.89	0.78	0.88	0.89	0.83	0.740537	1.000000	-
Rv1867	-	18	121.5	116.6	145.2	134.7	143.1	142.3	-0.135	-0.192	0.113	0.008	0.092	0.085	136.7	135.4	158.4	145.5	156.1	150.7	0.89	0.86	0.92	0.93	0.92	0.94	0.964228	1.000000	-
Rv1868	-	27	218.4	202.6	218.0	201.0	198.2	206.5	0.073	-0.034	0.070	-0.045	-0.064	-0.006	256.4	214.5	267.5	229.3	218.4	237.3	0.85	0.94	0.81	0.88	0.91	0.87	0.886929	1.000000	-
Rv1869c	-	23	149.6	141.8	135.7	144.1	126.7	132.7	0.108	0.034	-0.027	0.056	-0.123	-0.059	184.3	151.7	152.3	165.7	138.7	148.9	0.81	0.93	0.89	0.87	0.91	0.89	0.776940	1.000000	-
Rv1870c	-	10	95.9	124.4	95.1	94.6	100.7	94.5	-0.070	0.290	-0.080	-0.088	-0.002	-0.090	110.6	124.4	100.1	94.6	100.7	94.5	0.87	1.00	0.95	1.00	1.00	1.00	0.242017	1.000000	-
Rv1871c	-	8	194.3	184.2	181.3	182.8	184.4	209.0	0.037	-0.039	-0.061	-0.049	-0.037	0.139	194.3	184.2	181.3	190.7	184.4	222.9	1.00	1.00	1.00	0.96	1.00	0.94	0.876963	1.000000	-
Rv1872c	lldD2	13	256.1	201.8	238.7	214.6	183.6	269.5	0.168	-0.168	0.069	-0.081	-0.302	0.240	293.8	262.3	269.9	232.5	216.9	333.7	0.87	0.77	0.88	0.92	0.85	0.81	0.620820	1.000000	-
Rv1873	-	9	313.7	273.1	303.9	290.8	261.8	252.5	0.148	-0.049	0.103	0.040	-0.108	-0.160	313.7	273.1	303.9	302.0	261.8	252.5	1.00	1.00	1.00	0.96	1.00	1.00	0.960831	1.000000	-
Rv1874	-	11	189.6	198.8	187.3	202.8	197.1	194.8	-0.040	0.027	-0.057	0.055	0.015	-0.002	223.4	218.7	206.0	215.9	216.8	194.8	0.85	0.91	0.91	0.94	0.91	1.00	0.868574	1.000000	-
Rv1875	-	4	224.7	247.3	169.6	243.7	246.6	235.5	-0.020	0.116	-0.416	0.095	0.111	0.046	269.6	282.6	226.1	265.9	281.8	269.1	0.83	0.88	0.75	0.92	0.88	0.88	0.998908	1.000000	-
Rv1876	bfrA	10	138.7	152.1	139.1	158.0	150.7	169.6	-0.122	0.006	-0.118	0.060	-0.006	0.159	138.7	160.1	146.4	158.0	150.7	169.6	1.00	0.95	0.95	1.00	1.00	1.00	0.700616	1.000000	-
Rv1877	-	30	193.0	178.0	174.0	173.0	179.7	191.6	0.086	-0.027	-0.060	-0.068	-0.014	0.076	199.7	190.8	180.0	185.3	185.9	201.7	0.97	0.93	0.97	0.93	0.97	0.95	0.934214	1.000000	-
Rv1878	glnA3	26	84.9	64.2	83.0	78.2	75.7	75.9	0.134	-0.245	0.101	0.021	-0.022	-0.019	101.9	85.6	100.3	93.8	93.8	96.3	0.83	0.75	0.83	0.83	0.81	0.79	0.932615	1.000000	-
Rv1879	-	17	45.6	72.0	59.6	76.9	72.4	61.4	-0.461	0.145	-0.109	0.233	0.152	-0.069	55.4	79.0	75.0	80.0	79.4	67.3	0.82	0.91	0.79	0.96	0.91	0.91	0.187132	1.000000	-
Rv1880c	cyp140	15	109.7	102.6	121.1	107.6	111.9	94.7	0.022	-0.070	0.159	-0.004	0.050	-0.180	123.4	109.9	129.7	124.2	129.1	101.4	0.89	0.93	0.93	0.87	0.87	0.93	0.957560	1.000000	-
Rv1881c	lppE	8	57.8	66.7	49.7	64.5	56.6	72.2	-0.077	0.114	-0.276	0.069	-0.105	0.221	77.1	88.9	66.3	81.4	64.7	77.0	0.75	0.75	0.75	0.79	0.88	0.94	0.898678	1.000000	-
Rv1882c	-	14	189.6	204.6	207.1	208.7	200.5	197.1	-0.084	0.023	0.040	0.051	-0.005	-0.030	189.6	204.6	207.1	208.7	200.5	197.1	1.00	1.00	1.00	1.00	1.00	1.00	0.996554	1.000000	-
Rv1883c	-	6	182.1	193.9	184.7	202.0	172.1	198.0	-0.051	0.037	-0.031	0.095	-0.130	0.067	182.1	193.9	184.7	202.0	172.1	198.0	1.00	1.00	1.00	1.00	1.00	1.00	0.992510	1.000000	-
Rv1884c	rpfC	5	44.8	50.9	32.6	49.1	49.8	82.0	-0.183	-0.016	-0.589	-0.063	-0.045	0.621	51.7	63.6	54.3	56.7	62.3	82.0	0.87	0.80	0.60	0.87	0.80	1.00	0.353007	1.000000	-
Rv1885c	-	9	166.4	130.2	147.7	160.9	171.9	138.4	0.121	-0.221	-0.046	0.074	0.167	-0.137	166.4	130.2	147.7	160.9	171.9	155.7	1.00	1.00	1.00	1.00	1.00	0.89	0.392302	1.000000	-
Rv1886c	fbpB	23	138.0	144.8	128.4	130.7	137.1	158.6	-0.016	0.051	-0.116	-0.092	-0.025	0.178	144.3	144.8	144.1	143.2	143.4	165.8	0.96	1.00	0.89	0.91	0.96	0.96	0.348191	1.000000	-
Rv1887	-	19	188.9	161.3	192.2	173.0	186.5	146.2	0.110	-0.111	0.134	-0.013	0.092	-0.249	215.3	204.3	243.4	201.3	214.8	168.3	0.88	0.79	0.79	0.86	0.87	0.87	0.945144	1.000000	-
Rv1888c	-	13	106.8	96.5	109.5	103.9	111.7	97.2	0.033	-0.106	0.067	-0.005	0.095	-0.096	119.0	109.1	135.5	112.6	121.0	114.9	0.90	0.88	0.81	0.92	0.92	0.85	0.952938	1.000000	-
Rv1888A	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1889c	-	3	266.2	162.0	176.3	164.9	195.0	209.0	0.435	-0.264	-0.146	-0.239	-0.004	0.094	399.2	243.0	264.4	164.9	292.4	313.6	0.67	0.67	0.67	1.00	0.67	0.67	0.481978	1.000000	-
Rv1890c	-	8	98.6	91.6	88.9	92.3	113.2	82.8	0.057	-0.043	-0.084	-0.033	0.247	-0.182	112.7	97.7	101.6	92.3	113.2	88.3	0.88	0.94	0.88	1.00	1.00	0.94	0.625706	1.000000	-
Rv1891	-	8	292.8	230.8	232.7	254.7	179.1	209.8	0.321	-0.015	-0.004	0.124	-0.372	-0.150	292.8	230.8	248.3	254.7	179.1	209.8	1.00	1.00	0.94	1.00	1.00	1.00	0.714671	1.000000	-
Rv1892	-	7	307.8	254.2	284.1	272.0	298.2	247.9	0.148	-0.123	0.034	-0.028	0.102	-0.159	340.2	273.8	331.4	285.6	298.2	247.9	0.90	0.93	0.86	0.95	1.00	1.00	0.957221	1.000000	-
Rv1893	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv1894c	-	11	183.2	139.9	158.0	146.6	155.0	161.8	0.213	-0.165	0.005	-0.099	-0.022	0.038	252.0	162.0	217.3	179.2	179.5	187.4	0.73	0.86	0.73	0.82	0.86	0.86	0.964964	1.000000	-
Rv1895	-	17	109.4	77.4	102.5	94.9	97.6	94.1	0.180	-0.294	0.090	-0.015	0.023	-0.027	111.6	90.7	116.2	105.3	114.5	110.3	0.98	0.85	0.88	0.90	0.85	0.85	0.274201	1.000000	-
Rv1896c	-	21	125.5	106.4	120.7	134.3	100.0	112.1	0.103	-0.125	0.049	0.198	-0.211	-0.053	143.7	127.7	140.8	151.1	110.5	134.5	0.87	0.83	0.86	0.89	0.90	0.83	0.952851	1.000000	-
Rv1897c	-	4	173.7	68.9	181.1	167.8	156.7	143.3	0.219	-1.055	0.277	0.170	0.075	-0.051	231.6	110.3	241.4	223.8	209.0	191.1	0.75	0.62	0.75	0.75	0.75	0.75	0.585419	1.000000	-
Rv1898	-	3	243.6	226.9	231.1	245.7	224.1	206.5	0.083	-0.017	0.009	0.096	-0.035	-0.150	243.6	226.9	277.3	245.7	224.1	309.8	1.00	1.00	0.83	1.00	1.00	0.67	0.417712	1.000000	-
Rv1899c	lppD	10	242.3	253.2	268.7	241.0	263.8	244.9	-0.057	0.005	0.089	-0.065	0.063	-0.042	242.3	253.2	268.7	241.0	263.8	244.9	1.00	1.00	1.00	1.00	1.00	1.00	0.997932	1.000000	-
Rv1900c	lipJ	19	110.0	131.3	125.4	130.6	122.0	114.7	-0.147	0.098	0.035	0.091	-0.004	-0.090	125.4	142.6	158.9	148.9	132.4	117.8	0.88	0.92	0.79	0.88	0.92	0.97	0.573415	1.000000	-
Rv1901	cinA	17	111.6	137.7	137.8	134.3	134.9	135.1	-0.232	0.060	0.061	0.025	0.031	0.033	123.7	146.3	161.5	152.2	143.3	148.2	0.90	0.94	0.85	0.88	0.94	0.91	0.828655	1.000000	-
Rv1902c	nanT	30	108.1	110.8	103.1	96.6	103.2	96.9	0.065	0.100	0.000	-0.090	0.001	-0.085	121.6	114.7	112.5	102.3	110.5	100.2	0.89	0.97	0.92	0.94	0.93	0.97	0.847569	1.000000	-
Rv1903	-	5	72.9	62.1	88.2	73.1	85.6	94.7	-0.116	-0.331	0.142	-0.113	0.101	0.240	91.2	77.7	98.0	91.4	107.0	118.4	0.80	0.80	0.90	0.80	0.80	0.80	0.994713	1.000000	-
Rv1904	-	10	338.0	307.5	372.4	310.8	325.8	300.6	0.052	-0.082	0.190	-0.067	-0.000	-0.115	405.6	361.8	372.4	345.3	325.8	375.7	0.83	0.85	1.00	0.90	1.00	0.80	0.259513	1.000000	-
Rv1905c	aao	17	152.1	151.8	153.7	138.0	133.9	151.3	0.049	0.047	0.064	-0.086	-0.128	0.042	161.6	156.4	163.3	140.8	146.9	155.9	0.94	0.97	0.94	0.98	0.91	0.97	0.958030	1.000000	-
Rv1906c	-	9	98.2	115.0	115.3	149.3	154.2	88.0	-0.276	-0.059	-0.056	0.304	0.349	-0.427	126.3	147.9	148.2	161.2	173.5	105.6	0.78	0.78	0.78	0.93	0.89	0.83	0.727632	1.000000	-
Rv1907c	-	10	56.1	76.0	70.9	77.8	58.1	87.5	-0.316	0.090	-0.004	0.122	-0.269	0.282	70.2	84.4	83.4	97.3	68.4	97.2	0.80	0.90	0.85	0.80	0.85	0.90	0.860360	1.000000	-
Rv1908c	katG	34	55.5	76.0	58.0	94.9	94.3	82.7	-0.437	-0.016	-0.378	0.286	0.278	0.099	68.2	84.7	75.9	104.0	98.7	87.9	0.81	0.90	0.76	0.91	0.96	0.94	0.000237	0.005537	-
Rv1909c	furA	9	74.1	94.1	95.3	104.4	116.2	105.3	-0.384	-0.059	-0.042	0.084	0.231	0.096	100.0	105.9	122.5	122.5	130.7	145.8	0.74	0.89	0.78	0.85	0.89	0.72	0.859253	1.000000	-
Rv1910c	-	12	208.0	183.3	201.5	216.5	155.7	166.3	0.138	-0.040	0.094	0.194	-0.268	-0.176	214.0	191.2	210.3	236.2	155.7	166.3	0.97	0.96	0.96	0.92	1.00	1.00	0.517640	1.000000	-
Rv1911c	lppC	8	93.4	98.3	115.1	117.9	86.5	85.4	-0.085	-0.016	0.202	0.235	-0.190	-0.209	97.5	112.3	131.6	134.7	86.5	91.1	0.96	0.88	0.88	0.88	1.00	0.94	0.665720	1.000000	-
Rv1912c	fadB5	13	106.6	103.1	112.1	87.6	133.3	76.5	0.044	-0.002	0.115	-0.224	0.354	-0.409	109.4	121.8	121.5	110.2	150.7	104.7	0.97	0.85	0.92	0.79	0.88	0.73	0.054464	0.503036	-
Rv1913	-	10	173.8	146.9	176.3	159.2	133.9	160.4	0.130	-0.106	0.150	0.007	-0.235	0.017	193.1	163.2	195.9	176.9	148.8	178.2	0.90	0.90	0.90	0.90	0.90	0.90	0.999915	1.000000	-
Rv1914c	-	5	45.2	54.0	64.5	52.6	59.4	63.3	-0.292	-0.061	0.176	-0.094	0.066	0.152	56.5	60.0	80.6	65.8	74.2	79.2	0.80	0.90	0.80	0.80	0.80	0.80	0.912378	1.000000	-
Rv1915	aceAa	21	128.8	135.7	138.8	145.2	131.3	125.7	-0.058	0.015	0.046	0.110	-0.031	-0.091	137.5	142.4	149.5	145.2	134.5	125.7	0.94	0.95	0.93	1.00	0.98	1.00	0.484877	1.000000	-
Rv1916	aceAb	16	76.2	90.3	110.0	87.7	84.2	112.3	-0.278	-0.047	0.224	-0.087	-0.142	0.253	87.0	90.3	113.5	100.2	89.8	115.9	0.88	1.00	0.97	0.88	0.94	0.97	0.112158	0.786486	-
Rv1917c	PPE34	114	32.0	29.4	30.8	30.9	28.1	30.6	0.068	-0.039	0.022	0.024	-0.095	0.014	70.2	57.2	68.3	66.9	61.5	61.8	0.46	0.51	0.45	0.46	0.46	0.50	0.867402	1.000000	-
Rv1918c	PPE35	71	37.4	38.8	36.4	36.7	38.4	45.9	-0.050	-0.005	-0.085	-0.076	-0.018	0.213	75.2	63.3	69.9	69.2	58.0	68.6	0.50	0.61	0.52	0.53	0.66	0.67	0.294128	1.000000	-
Rv1919c	-	7	182.8	206.4	213.6	210.8	204.6	214.6	-0.164	0.006	0.055	0.036	-0.006	0.061	239.9	222.3	249.2	210.8	204.6	250.4	0.76	0.93	0.86	1.00	1.00	0.86	0.366184	1.000000	-
Rv1920	-	11	166.4	151.6	176.8	164.5	157.7	166.3	0.021	-0.109	0.106	0.005	-0.054	0.021	183.0	185.3	216.1	193.9	216.8	203.3	0.91	0.82	0.82	0.85	0.73	0.82	0.785944	1.000000	-
Rv1921c	lppF	20	132.9	111.5	125.0	122.7	128.9	125.4	0.092	-0.152	0.007	-0.019	0.049	0.011	156.3	120.5	147.1	136.3	139.3	147.5	0.85	0.93	0.85	0.90	0.93	0.85	0.966412	1.000000	-
Rv1922	-	19	81.5	75.1	83.3	86.6	83.7	84.1	-0.015	-0.125	0.015	0.068	0.021	0.028	105.6	81.6	105.5	100.8	90.9	88.8	0.77	0.92	0.79	0.86	0.92	0.95	0.568830	1.000000	-
Rv1923	lipD	28	148.9	167.0	136.0	160.7	159.0	197.4	-0.114	0.047	-0.239	-0.007	-0.022	0.282	158.3	173.1	141.1	164.6	161.9	204.7	0.94	0.96	0.96	0.98	0.98	0.96	0.375789	1.000000	-
Rv1924c	-	9	188.2	186.5	171.0	181.5	163.7	179.2	0.076	0.063	-0.059	0.025	-0.120	0.006	188.2	197.4	171.0	204.2	184.1	179.2	1.00	0.94	1.00	0.89	0.89	1.00	0.381161	1.000000	-
Rv1925	fadD31	34	127.3	162.9	99.5	165.5	169.4	183.5	-0.241	0.103	-0.581	0.125	0.158	0.270	139.6	165.3	114.7	177.7	171.9	194.9	0.91	0.99	0.87	0.93	0.99	0.94	0.000439	0.009576	-
Rv1926c	mpt63	8	3.5	5.1	3.5	5.2	5.9	8.2	-0.262	-0.023	-0.266	0.000	0.087	0.364	21.2	16.2	18.7	25.1	15.7	16.4	0.17	0.31	0.19	0.21	0.38	0.50	0.474480	1.000000	-
Rv1927	-	16	189.3	187.1	150.8	142.3	154.2	133.2	0.240	0.224	-0.078	-0.159	-0.047	-0.251	216.3	187.1	160.8	145.3	164.4	142.1	0.88	1.00	0.94	0.98	0.94	0.94	0.292766	1.000000	-
Rv1928c	-	17	72.5	84.9	72.3	82.5	71.1	90.3	-0.114	0.098	-0.119	0.060	-0.141	0.183	86.0	90.2	84.8	97.8	78.0	93.1	0.84	0.94	0.85	0.84	0.91	0.97	0.705700	1.000000	-
Rv1929c	-	9	50.5	69.0	51.7	64.0	69.7	54.1	-0.224	0.191	-0.194	0.089	0.204	-0.133	59.3	73.1	84.6	69.1	73.8	60.9	0.85	0.94	0.61	0.93	0.94	0.89	0.362551	1.000000	-
Rv1930c	-	4	34.8	38.3	33.6	30.6	38.8	47.2	-0.085	0.038	-0.130	-0.248	0.053	0.307	46.4	51.1	44.7	45.8	62.1	63.0	0.75	0.75	0.75	0.67	0.62	0.75	0.922502	1.000000	-
Rv1931c	-	2	226.6	193.5	198.1	211.9	186.7	131.2	0.238	0.016	0.049	0.144	-0.034	-0.528	226.6	193.5	198.1	211.9	186.7	131.2	1.00	1.00	1.00	1.00	1.00	1.00	0.377971	1.000000	-
Rv1932	tpx	7	109.9	169.5	147.4	173.7	125.6	147.2	-0.390	0.213	0.018	0.248	-0.205	0.016	109.9	182.6	147.4	202.7	125.6	147.2	1.00	0.93	1.00	0.86	1.00	1.00	0.018075	0.218545	-
Rv1933c	fadE18	9	163.6	178.9	134.8	147.3	184.8	145.0	0.039	0.165	-0.231	-0.107	0.210	-0.129	184.1	178.9	142.8	159.1	184.8	163.2	0.89	1.00	0.94	0.93	1.00	0.89	0.666942	1.000000	-
Rv1934c	fadE17	11	139.2	146.2	134.3	162.0	144.0	140.4	-0.051	0.018	-0.100	0.161	-0.003	-0.039	148.1	146.2	134.3	178.2	158.4	140.4	0.94	1.00	1.00	0.91	0.91	1.00	0.356480	1.000000	-
Rv1935c	echA13	10	175.9	187.9	171.2	151.8	155.0	178.0	0.048	0.141	0.010	-0.158	-0.129	0.065	211.1	187.9	214.0	175.1	155.0	187.4	0.83	1.00	0.80	0.87	1.00	0.95	0.280422	1.000000	-
Rv1936	-	15	147.0	148.7	137.2	147.6	136.5	136.5	0.045	0.062	-0.050	0.051	-0.057	-0.057	165.3	171.6	158.4	170.3	146.3	146.3	0.89	0.87	0.87	0.87	0.93	0.93	0.995051	1.000000	-
Rv1937	-	44	90.7	84.5	91.0	81.4	91.8	82.3	0.057	-0.040	0.063	-0.090	0.075	-0.075	106.9	95.3	97.7	93.5	99.8	89.4	0.85	0.89	0.93	0.87	0.92	0.92	0.712795	1.000000	-
Rv1938	ephB	16	86.4	71.4	68.5	62.4	77.3	43.0	0.321	0.062	0.007	-0.118	0.169	-0.608	106.4	108.8	91.4	83.2	79.7	50.9	0.81	0.66	0.75	0.75	0.97	0.84	0.003788	0.062447	-
Rv1939	-	5	82.2	77.5	68.8	68.5	67.1	67.5	0.180	0.101	-0.060	-0.065	-0.093	-0.086	102.7	110.7	86.0	85.7	83.9	84.4	0.80	0.70	0.80	0.80	0.80	0.80	0.986231	1.000000	-
Rv1940	ribA1	8	148.8	148.4	147.6	133.0	156.2	148.9	0.016	0.012	0.004	-0.141	0.083	0.016	148.8	148.4	147.6	133.0	156.2	148.9	1.00	1.00	1.00	1.00	1.00	1.00	0.993165	1.000000	-
Rv1941	-	3	164.3	126.1	98.1	137.7	116.1	96.2	0.403	0.034	-0.313	0.156	-0.081	-0.340	164.3	126.1	147.1	137.7	174.1	144.2	1.00	1.00	0.67	1.00	0.67	0.67	0.100026	0.743211	-
Rv1942c	-	2	124.1	163.7	195.9	147.8	128.1	54.1	-0.123	0.263	0.514	0.120	-0.079	-1.251	148.9	163.7	195.9	147.8	128.1	54.1	0.83	1.00	1.00	1.00	1.00	1.00	0.398460	1.000000	-
Rv1943c	-	10	56.4	89.2	85.4	79.1	77.9	86.0	-0.453	0.166	0.106	0.002	-0.018	0.115	105.7	127.5	131.4	139.6	103.9	114.6	0.53	0.70	0.65	0.57	0.75	0.75	0.925113	1.000000	-
Rv1944c	-	7	59.5	51.8	85.6	61.2	53.4	57.6	-0.044	-0.228	0.446	-0.007	-0.189	-0.087	78.1	60.4	85.6	67.6	57.5	67.2	0.76	0.86	1.00	0.90	0.93	0.86	0.559731	1.000000	-
Rv1945	-	19	104.6	99.3	117.5	113.7	109.7	102.3	-0.042	-0.114	0.119	0.073	0.024	-0.073	124.2	110.9	135.4	117.9	119.1	129.6	0.84	0.89	0.87	0.96	0.92	0.79	0.411395	1.000000	-
Rv1946c	lppG	7	90.9	96.8	79.1	101.5	103.5	119.6	-0.111	-0.025	-0.301	0.040	0.067	0.267	127.3	123.2	100.6	118.4	111.5	139.5	0.71	0.79	0.79	0.86	0.93	0.86	0.927537	1.000000	-
Rv1947	-	3	134.4	185.2	138.2	192.2	179.9	168.8	-0.299	0.150	-0.260	0.202	0.109	0.019	134.4	185.2	138.2	192.2	179.9	168.8	1.00	1.00	1.00	1.00	1.00	1.00	0.847907	1.000000	-
Rv1948c	-	15	33.5	40.4	32.0	43.2	35.9	34.7	-0.114	0.127	-0.171	0.212	-0.026	-0.066	51.9	48.5	50.5	57.2	51.2	41.7	0.64	0.83	0.63	0.76	0.70	0.83	0.711732	1.000000	-
Rv1949c	-	17	39.7	42.7	44.7	38.3	50.6	43.9	-0.112	-0.018	0.040	-0.157	0.204	0.016	96.4	103.7	94.9	102.9	101.3	87.7	0.41	0.41	0.47	0.37	0.50	0.50	0.991892	1.000000	-
Rv1950c	-	5	101.2	121.6	118.4	128.3	120.7	137.4	-0.250	0.004	-0.033	0.078	-0.006	0.173	108.4	121.6	118.4	128.3	120.7	137.4	0.93	1.00	1.00	1.00	1.00	1.00	0.901255	1.000000	-
Rv1951c	-	5	3.8	2.0	3.8	1.0	2.9	3.2	0.175	-0.145	0.175	-0.385	0.019	0.082	28.4	10.2	37.9	14.4	28.9	10.8	0.13	0.20	0.10	0.07	0.10	0.30	0.114706	0.798737	-
Rv1952	-	2	139.1	104.6	125.3	89.9	95.7	135.0	0.265	-0.130	0.120	-0.338	-0.253	0.223	139.1	104.6	125.3	89.9	95.7	135.0	1.00	1.00	1.00	1.00	1.00	1.00	0.665175	1.000000	-
Rv1953	-	9	53.2	44.8	54.5	45.4	47.2	42.9	0.136	-0.090	0.167	-0.074	-0.023	-0.145	95.8	89.6	89.2	72.1	106.2	70.3	0.56	0.50	0.61	0.63	0.44	0.61	0.926973	1.000000	-
Rv1954c	-	7	84.5	56.1	51.9	57.1	55.8	65.3	0.422	-0.129	-0.230	-0.105	-0.135	0.074	104.4	65.4	80.8	66.7	65.1	76.2	0.81	0.86	0.64	0.86	0.86	0.86	0.900613	1.000000	-
Rv1955	-	9	68.2	47.6	70.3	71.3	57.8	68.9	0.085	-0.392	0.126	0.145	-0.137	0.098	92.1	61.2	115.1	96.3	69.3	77.5	0.74	0.78	0.61	0.74	0.83	0.89	0.823935	1.000000	-
Rv1956	-	8	132.6	134.0	154.2	97.4	111.8	150.6	0.026	0.041	0.237	-0.400	-0.210	0.204	187.2	178.6	205.7	137.5	149.0	200.9	0.71	0.75	0.75	0.71	0.75	0.75	0.979989	1.000000	-
Rv1957	-	13	188.4	166.1	164.0	96.8	85.3	170.1	0.365	0.188	0.171	-0.560	-0.733	0.222	204.1	179.9	185.4	102.1	88.8	184.3	0.92	0.92	0.88	0.95	0.96	0.92	0.031172	0.337068	-
Rv1958c	-	11	107.2	107.5	117.7	101.6	92.5	119.8	-0.006	-0.003	0.122	-0.081	-0.209	0.147	131.1	131.4	161.8	128.9	101.7	131.8	0.82	0.82	0.73	0.79	0.91	0.91	0.929718	1.000000	-
Rv1959c	-	5	157.1	162.5	207.4	188.5	181.8	166.8	-0.170	-0.123	0.220	0.086	0.035	-0.086	235.7	203.1	259.2	235.7	227.2	238.3	0.67	0.80	0.80	0.80	0.80	0.70	0.999498	1.000000	-
Rv1960c	-	3	144.6	166.4	157.5	146.9	111.6	120.2	0.033	0.230	0.153	0.055	-0.327	-0.224	144.6	166.4	157.5	220.4	167.4	180.2	1.00	1.00	1.00	0.67	0.67	0.67	0.075017	0.623916	-
Rv1961	-	8	230.3	237.7	217.5	220.4	239.2	286.0	-0.049	-0.005	-0.130	-0.111	0.004	0.257	240.3	237.7	217.5	220.4	239.2	286.0	0.96	1.00	1.00	1.00	1.00	1.00	0.854831	1.000000	-
Rv1962c	-	13	152.1	182.8	160.8	158.1	160.5	178.7	-0.118	0.139	-0.040	-0.064	-0.043	0.108	164.8	198.0	174.2	171.2	173.9	178.7	0.92	0.92	0.92	0.92	0.92	1.00	0.860125	1.000000	-
Rv1963c	mce3R	16	48.8	75.7	68.4	56.4	58.3	70.1	-0.338	0.248	0.110	-0.145	-0.101	0.145	63.3	86.5	75.4	63.0	66.7	80.1	0.77	0.88	0.91	0.90	0.88	0.88	0.380522	1.000000	-
Rv1964	yrbE3A	6	185.2	193.5	202.7	184.4	206.2	210.4	-0.088	-0.026	0.040	-0.093	0.064	0.092	185.2	232.2	243.3	184.4	206.2	210.4	1.00	0.83	0.83	1.00	1.00	1.00	0.454384	1.000000	-
Rv1965	yrbE3B	13	216.7	242.7	239.8	224.6	222.2	223.4	-0.073	0.087	0.070	-0.022	-0.038	-0.030	222.4	242.7	259.8	243.3	240.7	223.4	0.97	1.00	0.92	0.92	0.92	1.00	0.682436	1.000000	-
Rv1966	mce3A	15	173.6	171.1	171.5	169.7	159.7	156.9	0.054	0.033	0.036	0.022	-0.063	-0.088	195.3	183.3	183.7	181.8	171.1	168.1	0.89	0.93	0.93	0.93	0.93	0.93	0.999958	1.000000	-
Rv1967	mce3B	12	225.7	257.5	194.9	256.1	197.7	225.8	-0.003	0.183	-0.210	0.175	-0.190	-0.003	232.2	257.5	203.4	279.3	197.7	225.8	0.97	1.00	0.96	0.92	1.00	1.00	0.282328	1.000000	-
Rv1968	mce3C	12	86.3	97.3	97.6	94.3	82.7	91.1	-0.081	0.083	0.088	0.041	-0.138	-0.007	119.4	155.6	137.8	125.8	94.6	121.5	0.72	0.62	0.71	0.75	0.88	0.75	0.738936	1.000000	-
Rv1969	mce3D	13	224.4	164.1	215.2	192.4	212.6	182.7	0.172	-0.268	0.113	-0.044	0.096	-0.117	224.4	170.7	215.2	197.5	212.6	206.6	1.00	0.96	1.00	0.97	1.00	0.88	0.244577	1.000000	-
Rv1970	lprM	6	56.4	89.1	58.2	94.3	87.4	86.3	-0.445	0.170	-0.404	0.248	0.144	0.127	67.7	89.1	69.8	106.0	95.3	86.3	0.83	1.00	0.83	0.89	0.92	1.00	0.434899	1.000000	-
Rv1971	mce3F	18	159.6	175.2	132.6	193.3	165.6	173.9	-0.061	0.070	-0.319	0.208	-0.010	0.059	191.5	175.2	149.2	197.0	165.6	173.9	0.83	1.00	0.89	0.98	1.00	1.00	0.011136	0.150114	-
Rv1972	-	4	184.4	197.4	147.7	161.5	176.9	121.9	0.156	0.252	-0.155	-0.029	0.098	-0.422	184.4	197.4	147.7	161.5	176.9	162.5	1.00	1.00	1.00	1.00	1.00	0.75	0.431393	1.000000	-
Rv1973	-	4	329.8	239.9	253.5	362.4	222.3	222.6	0.275	-0.176	-0.099	0.409	-0.284	-0.282	329.8	239.9	253.5	362.4	222.3	222.6	1.00	1.00	1.00	1.00	1.00	1.00	0.689444	1.000000	-
Rv1974	-	8	157.3	145.0	174.2	151.4	135.4	160.6	0.030	-0.084	0.172	-0.023	-0.179	0.059	157.3	145.0	174.2	151.4	135.4	160.6	1.00	1.00	1.00	1.00	1.00	1.00	0.918198	1.000000	-
Rv1975	-	12	208.3	181.8	173.4	202.8	202.1	210.3	0.083	-0.109	-0.176	0.045	0.040	0.096	214.3	198.3	189.1	221.2	202.1	229.4	0.97	0.92	0.92	0.92	1.00	0.92	0.770804	1.000000	-
Rv1976c	-	3	337.9	235.4	160.4	267.2	235.8	211.4	0.477	-0.035	-0.575	0.144	-0.033	-0.187	337.9	235.4	160.4	267.2	235.8	211.4	1.00	1.00	1.00	1.00	1.00	1.00	0.845534	1.000000	-
Rv1977	-	12	127.1	111.9	110.2	110.9	134.4	117.4	0.096	-0.081	-0.102	-0.094	0.173	-0.014	138.7	116.7	126.0	120.9	134.4	122.5	0.92	0.96	0.88	0.92	1.00	0.96	0.885129	1.000000	-
Rv1978	-	13	221.0	214.6	213.1	210.4	204.0	200.1	0.069	0.027	0.017	-0.001	-0.044	-0.072	269.4	242.6	251.8	248.6	241.1	208.1	0.82	0.88	0.85	0.85	0.85	0.96	0.974553	1.000000	-
Rv1979c	-	33	143.3	152.9	142.1	126.8	128.4	140.5	0.042	0.133	0.031	-0.128	-0.110	0.015	159.4	162.7	153.8	130.8	134.6	142.7	0.90	0.94	0.92	0.97	0.95	0.98	0.546632	1.000000	-
Rv1980c	mpt64	19	133.8	135.8	134.6	138.4	127.4	165.8	-0.056	-0.036	-0.048	-0.008	-0.124	0.243	162.2	161.2	165.0	157.8	134.5	203.2	0.82	0.84	0.82	0.88	0.95	0.82	0.431101	1.000000	-
Rv1981c	nrdF	22	165.7	166.3	136.5	150.6	144.6	146.4	0.123	0.129	-0.147	-0.010	-0.066	-0.049	191.8	178.5	154.0	162.9	159.1	161.0	0.86	0.93	0.89	0.92	0.91	0.91	0.983060	1.000000	-
Rv1982c	-	4	308.2	300.3	229.8	292.6	299.4	277.4	0.113	0.076	-0.303	0.039	0.072	-0.036	336.2	300.3	262.6	292.6	342.2	277.4	0.92	1.00	0.88	1.00	0.88	1.00	0.909943	1.000000	-
Rv1983	PE_PGRS35	29	156.3	152.0	138.0	150.9	153.1	148.3	0.060	0.021	-0.114	0.011	0.030	-0.014	191.5	169.6	163.3	168.3	164.4	148.3	0.82	0.90	0.84	0.90	0.93	1.00	0.086092	0.684368	-
Rv1984c	cfp21	13	127.2	142.9	122.7	138.7	138.0	163.5	-0.122	0.040	-0.172	-0.002	-0.009	0.229	165.4	185.8	167.9	180.3	163.0	202.5	0.77	0.77	0.73	0.77	0.85	0.81	0.971464	1.000000	-
Rv1985c	-	13	190.8	182.5	226.7	226.5	205.7	199.0	-0.102	-0.165	0.140	0.139	0.003	-0.043	190.8	182.5	235.7	232.5	205.7	199.0	1.00	1.00	0.96	0.97	1.00	1.00	0.813818	1.000000	-
Rv1986	-	8	199.8	290.0	224.2	248.7	215.2	158.7	-0.154	0.373	0.009	0.156	-0.049	-0.476	199.8	290.0	298.9	248.7	245.9	181.4	1.00	1.00	0.75	1.00	0.88	0.88	0.023554	0.268514	-
Rv1987	-	7	156.1	151.9	144.3	133.8	147.1	156.6	0.071	0.034	-0.038	-0.143	-0.011	0.076	182.1	177.3	168.3	156.1	171.6	182.7	0.86	0.86	0.86	0.86	0.86	0.86	0.999973	1.000000	-
Rv1988	-	6	193.5	132.9	133.9	146.5	134.7	171.1	0.338	-0.188	-0.178	-0.053	-0.169	0.165	204.9	132.9	146.1	146.5	134.7	171.1	0.94	1.00	0.92	1.00	1.00	1.00	0.837848	1.000000	-
Rv1989c	-	10	208.6	219.9	205.4	220.0	190.4	228.8	-0.024	0.050	-0.046	0.051	-0.153	0.106	208.6	219.9	205.4	220.0	190.4	228.8	1.00	1.00	1.00	1.00	1.00	1.00	0.975263	1.000000	-
Rv1990c	-	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv1990A	-	4	156.3	188.3	210.3	192.3	247.2	193.9	-0.332	-0.071	0.084	-0.041	0.313	-0.030	156.3	188.3	240.4	256.4	247.2	221.6	1.00	1.00	0.88	0.75	1.00	0.88	0.376748	1.000000	-
Rv1991c	-	4	207.3	255.1	255.3	272.7	222.9	285.0	-0.263	0.030	0.031	0.124	-0.161	0.187	207.3	255.1	255.3	272.7	222.9	285.0	1.00	1.00	1.00	1.00	1.00	1.00	0.886271	1.000000	-
Rv1992c	ctpG	31	221.5	203.7	209.2	197.5	218.0	209.6	0.075	-0.042	-0.005	-0.086	0.053	-0.002	239.5	210.5	235.8	213.6	229.1	216.6	0.92	0.97	0.89	0.92	0.95	0.97	0.927415	1.000000	-
Rv1993c	-	4	222.9	188.9	197.7	226.0	190.1	210.8	0.110	-0.122	-0.058	0.130	-0.113	0.032	222.9	251.9	197.7	246.5	190.1	210.8	1.00	0.75	1.00	0.92	1.00	1.00	0.625969	1.000000	-
Rv1994c	-	6	162.7	144.6	212.5	124.8	150.7	131.0	0.073	-0.092	0.449	-0.296	-0.034	-0.229	183.0	144.6	231.8	149.7	164.4	157.2	0.89	1.00	0.92	0.83	0.92	0.83	0.922253	1.000000	-
Rv1995	-	7	455.0	435.7	483.6	512.6	464.4	457.0	-0.040	-0.102	0.047	0.130	-0.011	-0.034	530.8	508.3	564.2	598.0	541.8	533.2	0.86	0.86	0.86	0.86	0.86	0.86	0.999952	1.000000	-
Rv1996	-	12	275.8	270.6	217.8	247.1	217.7	268.9	0.141	0.114	-0.193	-0.014	-0.193	0.105	320.2	295.2	248.9	287.0	217.7	268.9	0.86	0.92	0.88	0.86	1.00	1.00	0.294196	1.000000	-
Rv1997	ctpF	23	128.5	129.6	127.3	116.2	123.7	111.1	0.063	0.075	0.051	-0.075	0.011	-0.138	167.3	141.9	146.4	131.5	138.8	118.8	0.77	0.91	0.87	0.88	0.89	0.93	0.618482	1.000000	-
Rv1998c	-	17	55.7	70.8	70.2	72.6	69.1	62.4	-0.242	0.078	0.066	0.112	0.046	-0.092	88.8	100.2	103.7	97.4	81.1	75.7	0.63	0.71	0.68	0.75	0.85	0.82	0.746955	1.000000	-
Rv1999c	-	23	222.5	210.3	203.1	214.5	197.1	172.5	0.127	0.048	-0.002	0.075	-0.044	-0.231	255.9	225.0	239.6	235.0	206.1	188.9	0.87	0.93	0.85	0.91	0.96	0.91	0.933421	1.000000	-
Rv2000	-	32	106.4	118.6	108.4	102.5	106.8	119.3	-0.049	0.100	-0.024	-0.102	-0.045	0.108	114.8	122.4	113.7	106.9	112.0	123.1	0.93	0.97	0.95	0.96	0.95	0.97	0.883606	1.000000	-
Rv2001	-	13	103.6	103.7	95.7	112.2	103.8	85.4	0.038	0.040	-0.070	0.149	0.042	-0.226	139.3	112.3	131.0	125.1	150.0	92.5	0.74	0.92	0.73	0.90	0.69	0.92	0.129564	0.863040	-
Rv2002	fabG3	9	60.6	55.7	59.3	78.7	87.2	71.2	-0.170	-0.282	-0.197	0.182	0.321	0.046	68.1	59.0	82.1	106.2	98.1	80.0	0.89	0.94	0.72	0.74	0.89	0.89	0.095979	0.725300	-
Rv2003c	-	12	46.1	71.0	55.5	44.9	55.1	46.7	-0.188	0.385	0.055	-0.222	0.046	-0.171	66.4	94.7	78.3	70.3	69.6	65.9	0.69	0.75	0.71	0.64	0.79	0.71	0.920001	1.000000	-
Rv2004c	-	24	79.7	67.5	70.4	68.7	68.4	59.2	0.195	-0.029	0.028	-0.006	-0.012	-0.204	110.4	87.6	91.4	88.3	86.4	76.9	0.72	0.77	0.77	0.78	0.79	0.77	0.977505	1.000000	-
Rv2005c	-	10	47.5	46.6	49.7	32.3	50.0	56.5	0.012	-0.013	0.071	-0.482	0.077	0.238	67.9	84.8	71.0	48.4	71.4	86.9	0.70	0.55	0.70	0.67	0.70	0.65	0.599713	1.000000	-
Rv2006	otsB1	78	66.3	46.3	59.0	53.6	51.9	51.8	0.254	-0.223	0.097	-0.030	-0.071	-0.074	90.7	65.0	84.4	75.0	74.3	72.8	0.73	0.71	0.70	0.71	0.70	0.71	0.370542	1.000000	-
Rv2007c	fdxA	6	52.1	31.4	34.3	36.5	47.2	22.4	0.432	-0.216	-0.106	-0.029	0.303	-0.629	55.1	31.4	51.5	36.5	47.2	29.8	0.94	1.00	0.67	1.00	1.00	0.75	0.007669	0.112078	-
Rv2008c	-	27	59.7	52.1	61.9	62.1	50.3	62.0	0.038	-0.142	0.086	0.090	-0.188	0.089	87.9	74.0	77.8	79.8	67.9	79.8	0.68	0.70	0.80	0.78	0.74	0.78	0.868595	1.000000	-
Rv2009	-	2	163.5	155.0	161.1	180.7	175.6	124.3	0.030	-0.045	0.010	0.170	0.130	-0.352	245.3	155.0	161.1	180.7	175.6	165.7	0.67	1.00	1.00	1.00	1.00	0.75	0.734169	1.000000	-
Rv2010	-	6	193.8	194.3	198.1	174.7	165.4	173.2	0.079	0.082	0.110	-0.067	-0.144	-0.079	205.2	233.2	264.2	209.6	198.5	207.8	0.94	0.83	0.75	0.83	0.83	0.83	0.968535	1.000000	-
Rv2011c	-	6	217.6	133.9	178.2	181.0	176.3	152.6	0.320	-0.360	0.039	0.062	0.024	-0.178	217.6	133.9	178.2	181.0	176.3	152.6	1.00	1.00	1.00	1.00	1.00	1.00	0.714047	1.000000	-
Rv2012	-	10	184.1	178.2	157.5	165.3	176.8	175.7	0.088	0.042	-0.131	-0.063	0.031	0.022	204.5	198.0	175.0	165.3	176.8	195.3	0.90	0.90	0.90	1.00	1.00	0.90	0.446752	1.000000	-
Rv2013	-	2	127.0	127.5	250.3	244.0	191.7	106.8	-0.444	-0.439	0.508	0.472	0.132	-0.684	190.5	127.5	333.8	244.0	191.7	213.5	0.67	1.00	0.75	1.00	1.00	0.50	0.431465	1.000000	-
Rv2014	-	4	246.0	192.5	280.8	279.2	306.7	226.4	-0.052	-0.398	0.135	0.127	0.260	-0.169	246.0	220.0	280.8	279.2	306.7	226.4	1.00	0.88	1.00	1.00	1.00	1.00	0.921818	1.000000	-
Rv2015c	-	8	92.4	92.1	86.8	88.8	92.7	77.8	0.060	0.056	-0.026	0.005	0.065	-0.174	96.4	105.2	86.8	88.8	98.9	88.9	0.96	0.88	1.00	1.00	0.94	0.88	0.485299	1.000000	-
Rv2016	-	7	74.4	76.5	70.1	56.6	67.4	71.8	0.093	0.130	0.013	-0.274	-0.041	0.044	142.1	107.1	140.2	132.0	94.3	91.3	0.52	0.71	0.50	0.43	0.71	0.79	0.746198	1.000000	-
Rv2017	-	12	0.0	0.4	0.0	0.0	0.0	0.0	-0.020	0.096	-0.020	-0.020	-0.020	-0.020	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.04	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2018	-	14	17.5	21.4	18.1	26.6	30.6	25.7	-0.333	-0.100	-0.295	0.159	0.329	0.119	33.3	28.5	31.6	41.4	38.9	31.3	0.52	0.75	0.57	0.64	0.79	0.82	0.202198	1.000000	-
Rv2019	-	6	126.4	141.7	140.8	128.7	112.3	136.6	-0.050	0.109	0.099	-0.025	-0.214	0.057	126.4	141.7	153.6	128.7	112.3	136.6	1.00	1.00	0.92	1.00	1.00	1.00	0.885139	1.000000	-
Rv2020c	-	4	202.4	182.0	190.8	223.3	203.5	174.5	0.045	-0.105	-0.038	0.183	0.052	-0.164	220.8	242.6	190.8	223.3	203.5	199.5	0.92	0.75	1.00	1.00	1.00	0.88	0.668396	1.000000	-
Rv2021c	-	5	249.2	215.3	231.4	232.0	223.2	207.7	0.135	-0.071	0.031	0.034	-0.020	-0.122	373.8	269.2	257.2	316.4	223.2	346.2	0.67	0.80	0.90	0.73	1.00	0.60	0.413009	1.000000	-
Rv2022c	-	13	242.7	218.6	217.9	244.3	263.2	259.8	0.010	-0.138	-0.143	0.019	0.124	0.106	262.9	247.1	246.3	272.2	297.6	270.2	0.92	0.88	0.88	0.90	0.88	0.96	0.944271	1.000000	-
Rv2023c	-	2	55.3	58.9	63.9	62.7	68.6	77.3	-0.203	-0.119	-0.010	-0.038	0.083	0.244	55.3	58.9	63.9	62.7	68.6	77.3	1.00	1.00	1.00	1.00	1.00	1.00	0.552239	1.000000	-
Rv2024c	-	12	167.0	167.2	144.7	167.7	152.5	169.2	0.048	0.050	-0.153	0.054	-0.079	0.067	182.2	182.4	157.8	182.9	166.3	176.6	0.92	0.92	0.92	0.92	0.92	0.96	0.998756	1.000000	-
Rv2025c	-	9	134.2	161.0	179.0	141.0	138.8	150.6	-0.163	0.091	0.241	-0.093	-0.115	-0.001	164.6	170.4	189.6	146.5	138.8	169.4	0.81	0.94	0.94	0.96	1.00	0.89	0.725876	1.000000	-
Rv2026c	-	8	64.5	57.0	70.6	52.8	56.6	44.0	0.152	-0.013	0.272	-0.114	-0.023	-0.353	91.1	65.2	86.9	63.4	82.4	58.7	0.71	0.88	0.81	0.83	0.69	0.75	0.703072	1.000000	-
Rv2027c	-	14	199.5	220.3	189.5	208.7	207.3	181.6	-0.011	0.128	-0.084	0.052	0.042	-0.144	220.6	220.3	189.5	213.7	207.3	188.3	0.90	1.00	1.00	0.98	1.00	0.96	0.483842	1.000000	-
Rv2028c	-	11	106.1	77.4	71.9	79.5	75.3	74.0	0.374	-0.056	-0.155	-0.020	-0.095	-0.118	166.7	131.0	113.1	164.0	92.0	125.2	0.64	0.59	0.64	0.48	0.82	0.59	0.468398	1.000000	-
Rv2029c	pfkB	9	75.8	79.3	112.2	110.2	80.6	101.2	-0.282	-0.220	0.255	0.230	-0.199	0.113	85.3	84.0	126.2	129.4	90.7	101.2	0.89	0.94	0.89	0.85	0.89	1.00	0.165100	0.996469	-
Rv2030c	-	32	143.4	126.8	130.5	129.7	131.0	125.2	0.125	-0.047	-0.006	-0.015	-0.001	-0.064	162.0	147.5	149.2	151.9	155.3	145.7	0.89	0.86	0.88	0.85	0.84	0.86	0.985706	1.000000	-
Rv2031c	hspX	8	103.6	116.2	84.6	104.1	91.3	81.3	0.093	0.251	-0.185	0.099	-0.080	-0.240	113.1	132.8	104.1	118.9	97.4	86.7	0.92	0.88	0.81	0.88	0.94	0.94	0.979039	1.000000	-
Rv2032	acg	17	89.1	101.0	110.8	116.8	81.3	88.2	-0.129	0.044	0.171	0.244	-0.253	-0.142	103.2	118.5	130.0	126.8	86.4	96.7	0.86	0.85	0.85	0.92	0.94	0.91	0.741414	1.000000	-
Rv2033c	-	10	227.1	187.2	196.7	187.5	179.3	205.7	0.199	-0.073	-0.004	-0.071	-0.134	0.059	262.1	187.2	196.7	208.3	179.3	228.6	0.87	1.00	1.00	0.90	1.00	0.90	0.251670	1.000000	-
Rv2034	-	2	130.6	79.0	156.3	82.1	98.3	69.5	0.333	-0.358	0.584	-0.306	-0.059	-0.531	130.6	79.0	156.3	82.1	98.3	69.5	1.00	1.00	1.00	1.00	1.00	1.00	0.650977	1.000000	-
Rv2035	-	12	107.4	109.6	86.0	90.4	98.1	102.2	0.113	0.141	-0.192	-0.124	-0.012	0.045	117.1	109.6	93.8	92.9	107.0	102.2	0.92	1.00	0.92	0.97	0.92	1.00	0.605230	1.000000	-
Rv2036	-	7	79.3	82.2	74.9	75.3	79.4	70.6	0.042	0.089	-0.037	-0.030	0.043	-0.116	92.6	82.2	87.3	98.8	111.2	89.9	0.86	1.00	0.86	0.76	0.71	0.79	0.527768	1.000000	-
Rv2037c	-	15	73.6	69.5	84.6	73.7	58.9	59.9	0.067	-0.011	0.256	0.070	-0.232	-0.210	87.2	80.2	110.4	85.1	67.9	69.1	0.84	0.87	0.77	0.87	0.87	0.87	0.841990	1.000000	-
Rv2038c	-	16	50.5	43.0	38.1	32.0	29.7	35.6	0.363	0.154	-0.003	-0.223	-0.314	-0.086	75.7	57.3	55.4	45.1	47.5	47.5	0.67	0.75	0.69	0.71	0.62	0.75	0.564137	1.000000	-
Rv2039c	-	14	34.3	36.7	48.8	32.3	36.5	30.7	-0.081	0.006	0.373	-0.156	-0.001	-0.221	53.4	60.5	80.4	45.2	48.7	37.3	0.64	0.61	0.61	0.71	0.75	0.82	0.141593	0.918629	-
Rv2040c	-	16	21.8	25.2	23.4	19.6	25.3	27.7	-0.107	0.066	-0.020	-0.228	0.072	0.181	45.4	36.7	39.5	34.9	36.8	42.2	0.48	0.69	0.59	0.56	0.69	0.66	0.849551	1.000000	-
Rv2041c	-	21	54.6	54.4	46.1	52.4	45.8	55.0	0.081	0.076	-0.142	0.026	-0.151	0.089	68.8	69.3	66.8	62.3	49.3	64.1	0.79	0.79	0.69	0.84	0.93	0.86	0.363966	1.000000	-
Rv2042c	-	14	99.2	75.9	80.2	64.5	76.8	108.6	0.225	-0.141	-0.067	-0.359	-0.125	0.348	104.2	96.6	97.6	84.7	102.4	138.2	0.95	0.79	0.82	0.76	0.75	0.79	0.062876	0.553806	-
Rv2043c	pncA	11	136.9	105.3	112.7	107.9	106.5	92.4	0.300	-0.063	0.030	-0.030	-0.048	-0.244	161.4	115.9	130.5	122.8	117.2	96.8	0.85	0.91	0.86	0.88	0.91	0.95	0.943871	1.000000	-
Rv2044c	-	7	72.9	106.9	103.6	68.1	75.6	82.2	-0.207	0.316	0.273	-0.298	-0.157	-0.044	72.9	106.9	111.6	68.1	75.6	82.2	1.00	1.00	0.93	1.00	1.00	1.00	0.193854	1.000000	-
Rv2045c	lipT	27	131.2	97.7	137.3	123.4	116.7	100.7	0.149	-0.258	0.212	0.064	-0.013	-0.217	138.0	109.9	145.4	131.5	123.6	111.0	0.95	0.89	0.94	0.94	0.94	0.91	0.807700	1.000000	-
Rv2046	lppI	10	313.7	262.6	271.9	216.3	208.3	286.2	0.267	0.015	0.064	-0.259	-0.312	0.137	313.7	262.6	271.9	216.3	208.3	286.2	1.00	1.00	1.00	1.00	1.00	1.00	0.403634	1.000000	-
Rv2047c	-	30	0.3	0.5	27.3	92.0	85.8	1.0	-2.910	-2.842	-0.289	1.297	1.201	-2.716	22.6	10.1	38.1	107.5	100.9	10.1	0.01	0.05	0.72	0.86	0.85	0.10	0.000000	0.000000	-
Rv2048c	pks12	130	3.1	12.9	17.8	51.8	50.7	6.5	-1.827	-0.690	-0.334	0.980	0.951	-1.325	23.4	28.3	40.0	74.0	73.6	19.9	0.13	0.45	0.45	0.70	0.69	0.33	0.000000	0.000000	-
Rv2049c	-	1	382.3	77.0	115.8	284.2	111.9	394.2	0.736	-1.503	-0.944	0.314	-0.992	0.779	382.3	77.0	115.8	284.2	111.9	394.2	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2050	-	5	0.8	2.0	2.5	0.0	4.7	2.2	-0.285	0.002	0.097	-0.492	0.463	0.028	11.6	10.2	25.2	0.0	23.5	21.7	0.07	0.20	0.10	0.00	0.20	0.10	0.737849	1.000000	-
Rv2051c	ppm1	32	99.6	95.0	106.5	73.2	117.1	84.3	0.051	-0.014	0.143	-0.368	0.274	-0.177	227.6	202.6	206.5	159.7	220.4	158.7	0.44	0.47	0.52	0.46	0.53	0.53	0.733698	1.000000	-
Rv2052c	-	19	258.1	237.8	237.8	258.0	211.3	203.3	0.136	0.020	0.021	0.136	-0.146	-0.201	267.4	265.7	237.8	272.3	223.0	214.6	0.96	0.89	1.00	0.95	0.95	0.95	0.528367	1.000000	-
Rv2053c	fxsA	3	102.0	95.0	87.8	76.2	85.7	173.6	-0.018	-0.116	-0.224	-0.417	-0.256	0.720	153.0	114.0	131.6	114.3	128.6	208.3	0.67	0.83	0.67	0.67	0.67	0.83	0.934538	1.000000	-
Rv2054	-	15	163.0	152.8	186.7	173.0	192.3	187.8	-0.107	-0.198	0.084	-0.024	0.125	0.092	178.9	163.7	200.1	185.3	198.9	201.3	0.91	0.93	0.93	0.93	0.97	0.93	0.980848	1.000000	-
Rv2055c	rpsR	3	67.8	42.6	73.0	82.4	84.6	67.8	-0.037	-0.650	0.063	0.226	0.262	-0.038	76.3	51.1	73.0	92.7	84.6	81.3	0.89	0.83	1.00	0.89	1.00	0.83	0.831624	1.000000	-
Rv2056c	rpsN	3	103.8	93.2	117.7	99.7	97.8	121.1	-0.023	-0.171	0.151	-0.079	-0.105	0.190	103.8	93.2	141.3	112.1	97.8	121.1	1.00	1.00	0.83	0.89	1.00	1.00	0.847593	1.000000	-
Rv2057c	rpmG	4	342.0	340.3	344.2	365.2	327.8	307.7	0.018	0.010	0.026	0.111	-0.043	-0.133	342.0	340.3	344.2	365.2	327.8	307.7	1.00	1.00	1.00	1.00	1.00	1.00	0.998314	1.000000	-
Rv2058c	rpmB	5	159.1	159.1	132.1	126.6	143.4	142.7	0.140	0.141	-0.118	-0.178	-0.004	-0.011	159.1	159.1	132.1	126.6	143.4	142.7	1.00	1.00	1.00	1.00	1.00	1.00	0.964977	1.000000	-
Rv2059	-	17	107.0	112.2	103.2	99.6	107.9	120.9	-0.018	0.046	-0.069	-0.117	-0.008	0.150	121.3	115.6	113.1	108.1	107.9	128.5	0.88	0.97	0.91	0.92	1.00	0.94	0.663638	1.000000	-
Rv2060	-	3	123.3	99.9	108.2	102.0	147.7	133.1	0.049	-0.241	-0.132	-0.213	0.300	0.154	123.3	99.9	108.2	102.0	147.7	133.1	1.00	1.00	1.00	1.00	1.00	1.00	0.836592	1.000000	-
Rv2061c	-	5	150.7	195.6	165.1	161.2	148.5	176.2	-0.137	0.229	-0.010	-0.043	-0.157	0.082	150.7	195.6	165.1	161.2	148.5	176.2	1.00	1.00	1.00	1.00	1.00	1.00	0.946026	1.000000	-
Rv2062c	cobN	46	130.9	106.2	132.3	115.9	109.7	117.6	0.135	-0.154	0.150	-0.034	-0.110	-0.013	155.8	139.6	160.2	137.8	131.1	140.6	0.84	0.76	0.83	0.84	0.84	0.84	0.822418	1.000000	-
Rv2063	-	2	25.2	25.3	15.8	16.3	54.6	52.3	-0.276	-0.272	-0.815	-0.782	0.704	0.648	30.2	25.3	63.1	32.5	54.6	52.3	0.83	1.00	0.25	0.50	1.00	1.00	0.007576	0.111130	-
Rv2064	cobG	8	41.6	35.6	41.3	41.4	43.1	29.7	0.091	-0.110	0.081	0.085	0.135	-0.336	90.8	63.2	66.1	76.5	68.9	118.7	0.46	0.56	0.62	0.54	0.62	0.25	0.406019	1.000000	-
Rv2065	cobH	5	116.9	141.3	126.7	166.5	159.4	112.9	-0.223	0.040	-0.111	0.269	0.209	-0.272	146.1	201.8	181.1	249.7	159.4	125.4	0.80	0.70	0.70	0.67	1.00	0.90	0.359410	1.000000	-
Rv2066	cobI	20	302.4	282.5	279.5	288.3	248.9	264.5	0.121	0.024	0.009	0.053	-0.155	-0.069	329.9	289.7	302.1	303.4	269.1	293.9	0.92	0.97	0.93	0.95	0.93	0.90	0.979318	1.000000	-
Rv2067c	-	31	80.4	92.7	84.9	86.1	71.2	85.9	-0.052	0.142	0.021	0.041	-0.216	0.038	131.2	127.8	128.3	114.4	100.4	118.4	0.61	0.73	0.66	0.75	0.71	0.73	0.938727	1.000000	-
Rv2068c	blaC	13	225.4	217.6	237.5	246.0	212.1	214.4	-0.001	-0.050	0.073	0.123	-0.086	-0.071	258.5	217.6	294.0	259.3	212.1	214.4	0.87	1.00	0.81	0.95	1.00	1.00	0.270426	1.000000	-
Rv2069	sigC	8	206.4	187.2	170.6	181.8	206.4	177.0	0.129	-0.008	-0.138	-0.049	0.129	-0.086	225.1	213.9	195.0	198.4	206.4	202.3	0.92	0.88	0.88	0.92	1.00	0.88	0.940438	1.000000	-
Rv2070c	cobK	15	113.3	110.1	116.5	120.3	109.6	118.4	-0.017	-0.057	0.022	0.067	-0.063	0.044	164.4	157.2	174.7	169.2	173.0	154.4	0.69	0.70	0.67	0.71	0.63	0.77	0.997551	1.000000	-
Rv2071c	cobM	12	114.7	158.9	154.6	155.0	126.9	124.0	-0.267	0.186	0.148	0.152	-0.127	-0.159	147.5	173.3	168.7	169.1	160.3	148.8	0.78	0.92	0.92	0.92	0.79	0.83	0.750044	1.000000	-
Rv2072c	cobL	13	105.0	98.2	128.5	130.8	111.8	93.2	-0.080	-0.172	0.199	0.225	0.007	-0.243	120.4	111.0	159.0	159.5	121.2	115.4	0.87	0.88	0.81	0.82	0.92	0.81	0.646316	1.000000	-
Rv2073c	-	8	193.3	167.7	178.8	168.9	202.5	134.6	0.145	-0.054	0.036	-0.044	0.210	-0.361	201.7	167.7	190.7	193.1	202.5	134.6	0.96	1.00	0.94	0.88	1.00	1.00	0.581295	1.000000	-
Rv2074	-	5	204.8	188.7	192.6	182.5	164.2	161.5	0.163	0.048	0.076	0.001	-0.147	-0.171	204.8	209.7	192.6	182.5	164.2	179.4	1.00	0.90	1.00	1.00	1.00	0.90	0.832085	1.000000	-
Rv2075c	-	23	288.7	261.9	291.9	255.0	243.1	270.2	0.103	-0.035	0.118	-0.073	-0.140	0.009	306.4	301.2	305.1	270.7	260.1	282.5	0.94	0.87	0.96	0.94	0.93	0.96	0.912779	1.000000	-
Rv2076c	-	5	47.2	48.8	51.3	52.3	58.8	54.0	-0.128	-0.085	-0.020	0.005	0.161	0.049	78.7	69.7	73.3	65.3	65.4	60.0	0.60	0.70	0.70	0.80	0.90	0.90	0.928202	1.000000	-
Rv2077c	-	17	278.5	233.0	279.0	238.2	226.8	254.6	0.143	-0.109	0.146	-0.078	-0.147	0.016	315.6	264.1	296.5	248.0	241.0	262.3	0.88	0.88	0.94	0.96	0.94	0.97	0.851949	1.000000	-
Rv2077A	-	7	91.9	65.0	94.5	73.9	98.4	116.8	0.027	-0.442	0.065	-0.269	0.121	0.357	113.5	91.0	120.2	86.2	114.8	148.6	0.81	0.71	0.79	0.86	0.86	0.79	0.754474	1.000000	-
Rv2078	-	3	99.3	67.8	81.2	62.5	80.9	83.1	0.310	-0.209	0.036	-0.318	0.030	0.067	99.3	67.8	81.2	62.5	80.9	83.1	1.00	1.00	1.00	1.00	1.00	1.00	0.837986	1.000000	-
Rv2079	-	31	120.8	97.2	108.8	109.2	102.2	100.4	0.175	-0.125	0.030	0.036	-0.056	-0.080	178.3	162.8	164.5	145.1	144.0	129.7	0.68	0.60	0.66	0.75	0.71	0.77	0.722041	1.000000	-
Rv2080	lppJ	10	21.4	35.3	31.3	25.5	25.7	32.7	-0.350	0.259	0.110	-0.143	-0.132	0.165	40.1	50.4	44.7	42.5	39.6	46.8	0.53	0.70	0.70	0.60	0.65	0.70	0.970439	1.000000	-
Rv2081c	-	7	204.5	171.9	203.8	180.5	169.5	183.7	0.136	-0.108	0.131	-0.039	-0.128	-0.015	306.7	218.8	356.6	291.6	237.3	285.7	0.67	0.79	0.57	0.62	0.71	0.64	0.988322	1.000000	-
Rv2082	-	34	97.7	89.9	89.7	86.2	89.2	87.7	0.111	-0.002	-0.006	-0.060	-0.013	-0.036	136.5	117.6	138.6	129.3	126.4	106.5	0.72	0.76	0.65	0.67	0.71	0.82	0.745807	1.000000	-
Rv2083	-	4	128.7	123.3	129.7	143.0	152.5	136.1	-0.072	-0.131	-0.061	0.074	0.164	0.005	128.7	141.0	129.7	143.0	152.5	155.5	1.00	0.88	1.00	1.00	1.00	0.88	0.719401	1.000000	-
Rv2084	-	25	192.5	191.2	192.1	210.5	213.4	193.6	-0.046	-0.055	-0.049	0.080	0.099	-0.038	203.3	203.4	208.8	222.4	222.3	206.0	0.95	0.94	0.92	0.95	0.96	0.94	0.992434	1.000000	-
Rv2085	-	3	94.8	82.9	65.6	94.2	58.6	102.2	0.181	-0.003	-0.320	0.173	-0.469	0.284	106.7	124.3	78.7	106.0	58.6	102.2	0.89	0.67	0.83	0.89	1.00	1.00	0.244158	1.000000	-
Rv2086	-	10	122.3	107.0	163.4	100.8	111.3	169.6	-0.075	-0.259	0.329	-0.342	-0.205	0.381	122.3	107.0	172.0	100.8	117.2	169.6	1.00	1.00	0.95	1.00	0.95	1.00	0.129293	0.862675	-
Rv2087	-	4	9.0	13.9	1.6	7.2	12.2	8.9	0.022	0.457	-1.069	-0.183	0.316	0.015	21.6	22.3	12.6	14.3	24.4	23.8	0.42	0.62	0.12	0.50	0.50	0.38	0.427019	1.000000	-
Rv2088	pknJ	23	47.8	60.9	58.0	53.8	55.0	49.3	-0.163	0.156	0.090	-0.008	0.021	-0.123	61.1	80.1	78.4	88.4	63.3	59.7	0.78	0.76	0.74	0.61	0.87	0.83	0.042178	0.423900	-
Rv2089c	pepE	19	47.2	45.0	49.0	37.1	47.6	44.6	0.060	-0.003	0.110	-0.251	0.069	-0.013	69.0	53.4	64.3	60.4	58.3	58.5	0.68	0.84	0.76	0.61	0.82	0.76	0.559553	1.000000	-
Rv2090	-	15	126.3	121.9	128.9	103.6	115.4	129.5	0.060	0.011	0.088	-0.213	-0.065	0.095	145.7	130.6	138.1	103.6	128.2	129.5	0.87	0.93	0.93	1.00	0.90	1.00	0.092922	0.710267	-
Rv2091c	-	18	81.1	78.6	80.5	97.1	95.8	89.2	-0.097	-0.138	-0.107	0.150	0.131	0.033	82.6	80.9	80.5	97.1	98.5	89.2	0.98	0.97	1.00	1.00	0.97	1.00	0.283798	1.000000	-
Rv2092c	helY	36	224.4	205.1	215.0	209.7	220.8	209.8	0.066	-0.061	0.006	-0.029	0.043	-0.029	235.3	214.0	231.0	219.9	230.4	215.8	0.95	0.96	0.93	0.95	0.96	0.97	0.999086	1.000000	-
Rv2093c	tatC	11	3.8	4.6	4.3	1.3	0.4	0.9	0.224	0.343	0.294	-0.254	-0.483	-0.353	15.8	12.6	18.8	22.1	9.0	10.1	0.24	0.36	0.23	0.06	0.05	0.09	0.005476	0.086365	-
Rv2094c	tatA	2	1.9	2.5	3.1	0.0	0.0	2.4	0.059	0.172	0.292	-0.413	-0.413	0.143	11.6	10.0	12.6	0.0	0.0	9.4	0.17	0.25	0.25	0.00	0.00	0.25	0.821218	1.000000	-
Rv2095c	-	14	243.2	251.9	242.0	239.0	225.1	232.1	0.025	0.075	0.018	0.001	-0.084	-0.041	261.9	261.2	271.0	239.0	242.4	232.1	0.93	0.96	0.89	1.00	0.93	1.00	0.548485	1.000000	-
Rv2096c	-	13	121.7	136.1	126.6	154.4	138.2	153.3	-0.178	-0.023	-0.124	0.153	-0.002	0.143	148.4	147.5	164.6	172.1	149.7	166.1	0.82	0.92	0.77	0.90	0.92	0.92	0.903478	1.000000	-
Rv2097c	-	20	42.6	76.8	45.1	61.5	67.9	59.0	-0.423	0.358	-0.350	0.059	0.193	0.004	60.8	85.3	66.8	72.3	75.5	65.5	0.70	0.90	0.68	0.85	0.90	0.90	0.101912	0.747564	-
Rv2100	-	18	269.0	280.0	301.8	269.3	257.5	259.7	-0.020	0.037	0.143	-0.019	-0.082	-0.070	269.0	305.5	301.8	309.4	272.7	275.0	1.00	0.92	1.00	0.87	0.94	0.94	0.092268	0.708520	-
Rv2101	helZ	27	232.9	221.4	216.4	221.0	224.2	213.4	0.071	-0.001	-0.033	-0.004	0.017	-0.053	290.3	244.0	265.6	259.4	257.6	221.6	0.80	0.91	0.81	0.85	0.87	0.96	0.579194	1.000000	-
Rv2102	-	11	171.8	165.8	169.4	151.1	170.6	164.8	0.052	0.001	0.032	-0.128	0.042	-0.007	210.0	182.3	196.1	166.2	187.7	181.2	0.82	0.91	0.86	0.91	0.91	0.91	0.996767	1.000000	-
Rv2103c	-	5	448.9	327.8	325.9	287.8	279.8	255.3	0.478	0.030	0.022	-0.155	-0.195	-0.324	561.1	409.7	407.3	359.7	279.8	319.2	0.80	0.80	0.80	0.80	1.00	0.80	0.676686	1.000000	-
Rv2104c	-	1	97.4	82.5	84.3	106.9	110.9	115.5	-0.030	-0.257	-0.228	0.097	0.148	0.204	97.4	82.5	84.3	106.9	110.9	115.5	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2105	-	4	196.2	237.2	210.0	237.3	235.3	182.9	-0.139	0.129	-0.043	0.130	0.118	-0.237	214.0	237.2	210.0	237.3	235.3	182.9	0.92	1.00	1.00	1.00	1.00	1.00	0.923405	1.000000	-
Rv2106	-	21	287.2	295.3	331.3	310.8	277.6	296.5	-0.061	-0.021	0.142	0.051	-0.109	-0.016	354.8	354.3	434.8	376.5	353.3	327.7	0.81	0.83	0.76	0.83	0.79	0.90	0.941349	1.000000	-
Rv2107	PE22	9	15.4	21.6	17.8	22.2	26.8	37.5	-0.482	-0.103	-0.326	-0.069	0.154	0.575	29.8	29.9	32.0	27.3	30.1	42.2	0.52	0.72	0.56	0.81	0.89	0.89	0.028503	0.313300	-
Rv2108	PPE36	19	130.6	125.9	125.0	121.2	102.7	118.6	0.110	0.059	0.048	0.006	-0.222	-0.024	155.1	140.7	158.3	138.1	108.4	118.6	0.84	0.89	0.79	0.88	0.95	1.00	0.151692	0.950156	-
Rv2109c	prcA	17	18.3	33.4	11.9	15.6	22.4	19.4	-0.111	0.612	-0.573	-0.291	0.121	-0.045	34.5	39.2	27.0	27.4	30.4	22.7	0.53	0.85	0.44	0.57	0.74	0.85	0.000551	0.011759	-
Rv2110c	prcB	16	6.6	17.8	8.2	5.9	14.2	12.7	-0.459	0.521	-0.266	-0.543	0.270	0.156	28.6	27.1	29.2	18.9	19.7	20.3	0.23	0.66	0.28	0.31	0.72	0.62	0.000083	0.002158	-
Rv2111c	-	1	0.0	35.8	0.0	9.7	20.8	19.5	-1.948	1.080	-1.948	-0.389	0.416	0.344	0.0	35.8	0.0	14.6	20.8	19.5	0.00	1.00	0.00	0.67	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2112c	-	29	41.0	69.6	50.1	53.3	66.3	60.3	-0.426	0.272	-0.165	-0.082	0.206	0.081	57.5	79.2	66.1	64.5	68.6	61.4	0.71	0.88	0.76	0.83	0.97	0.98	0.000089	0.002303	-
Rv2113	-	10	140.1	153.4	166.6	151.8	188.1	135.9	-0.150	-0.023	0.093	-0.038	0.262	-0.193	161.6	161.5	196.0	168.6	188.1	143.0	0.87	0.95	0.85	0.90	1.00	0.95	0.763482	1.000000	-
Rv2114	-	12	170.7	159.6	174.4	144.2	160.1	175.7	0.055	-0.039	0.085	-0.181	-0.035	0.096	170.7	159.6	174.4	144.2	160.1	175.7	1.00	1.00	1.00	1.00	1.00	1.00	0.912841	1.000000	-
Rv2115c	-	23	32.3	49.1	27.4	51.9	52.3	46.7	-0.371	0.164	-0.577	0.236	0.247	0.099	42.9	52.5	37.0	55.1	55.9	48.9	0.75	0.93	0.74	0.94	0.93	0.96	0.000142	0.003521	-
Rv2116	lppK	5	106.3	117.8	89.7	136.9	142.8	107.7	-0.130	0.011	-0.364	0.219	0.279	-0.113	122.7	117.8	112.1	136.9	158.7	119.6	0.87	1.00	0.80	1.00	0.90	0.90	0.756404	1.000000	-
Rv2117	-	2	121.8	61.1	134.5	123.6	125.4	135.7	0.056	-0.885	0.193	0.075	0.096	0.206	121.8	81.4	134.5	123.6	125.4	135.7	1.00	0.75	1.00	1.00	1.00	1.00	0.541247	1.000000	-
Rv2118c	-	12	181.7	186.7	202.1	179.7	185.6	192.0	-0.048	-0.010	0.102	-0.063	-0.018	0.030	186.9	194.8	210.9	179.7	185.6	192.0	0.97	0.96	0.96	1.00	1.00	1.00	0.896179	1.000000	-
Rv2119	-	18	182.1	188.2	173.7	183.4	169.8	164.6	0.040	0.087	-0.026	0.050	-0.058	-0.102	204.9	199.3	195.4	206.4	179.8	174.2	0.89	0.94	0.89	0.89	0.94	0.94	0.992421	1.000000	-
Rv2120c	-	7	201.8	218.9	191.1	241.1	183.2	167.8	0.008	0.123	-0.069	0.259	-0.128	-0.251	302.6	306.5	222.9	421.9	256.4	180.7	0.67	0.71	0.86	0.57	0.71	0.93	0.370904	1.000000	-
Rv2121c	hisG	9	0.4	0.0	0.0	0.5	0.8	0.0	0.036	-0.083	-0.083	0.067	0.132	-0.083	11.6	0.0	0.0	14.8	14.5	0.0	0.04	0.00	0.00	0.04	0.06	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2122c	hisE	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2123	PPE37	21	133.6	142.3	154.1	3.1	3.9	148.6	0.434	0.521	0.633	-3.654	-3.525	0.582	171.7	181.0	190.3	18.0	18.3	164.2	0.78	0.79	0.81	0.17	0.21	0.90	0.000000	0.000000	-
Rv2124c	metH	38	108.6	120.5	114.1	123.2	110.1	125.7	-0.103	0.040	-0.035	0.071	-0.084	0.099	122.6	127.1	127.6	128.9	116.2	127.4	0.89	0.95	0.89	0.96	0.95	0.99	0.426391	1.000000	-
Rv2125	-	9	170.4	153.2	159.4	157.8	168.6	152.5	0.086	-0.063	-0.008	-0.022	0.070	-0.070	177.0	162.3	168.8	157.8	178.5	152.5	0.96	0.94	0.94	1.00	0.94	1.00	0.993905	1.000000	-
Rv2126c	PE_PGRS37	5	367.6	347.2	407.0	272.2	289.4	256.1	0.183	0.102	0.328	-0.244	-0.157	-0.330	367.6	385.8	407.0	291.6	361.8	256.1	1.00	0.90	1.00	0.93	0.80	1.00	0.572569	1.000000	-
Rv2127	ansP1	24	133.6	112.0	125.5	73.2	79.2	103.5	0.341	0.096	0.253	-0.486	-0.379	-0.014	157.7	122.2	162.8	83.6	90.5	112.9	0.85	0.92	0.77	0.88	0.88	0.92	0.066223	0.576920	-
Rv2128	-	6	33.2	31.3	23.4	24.5	21.5	37.0	0.191	0.116	-0.237	-0.185	-0.337	0.327	42.7	31.3	28.1	29.3	23.5	37.0	0.78	1.00	0.83	0.83	0.92	1.00	0.223027	1.000000	-
Rv2129c	-	11	254.4	247.7	277.9	228.3	196.3	183.9	0.134	0.096	0.259	-0.019	-0.232	-0.324	270.8	247.7	277.9	251.1	196.3	183.9	0.94	1.00	1.00	0.91	1.00	1.00	0.409208	1.000000	-
Rv2130c	cysS	22	30.0	26.3	34.5	11.2	26.9	19.2	0.237	0.076	0.412	-0.877	0.106	-0.293	44.9	39.9	48.9	23.0	35.9	27.3	0.67	0.66	0.70	0.48	0.75	0.70	0.000053	0.001425	-
Rv2131c	cysQ	9	108.1	160.2	71.5	169.0	163.9	127.5	-0.291	0.256	-0.855	0.331	0.288	-0.063	132.7	169.6	107.2	190.1	163.9	127.5	0.81	0.94	0.67	0.89	1.00	1.00	0.035968	0.375687	-
Rv2132	-	2	148.4	144.3	199.5	117.8	197.3	187.8	-0.156	-0.194	0.260	-0.476	0.243	0.174	148.4	144.3	199.5	117.8	197.3	187.8	1.00	1.00	1.00	1.00	1.00	1.00	0.368661	1.000000	-
Rv2133c	-	9	206.7	196.4	204.5	138.0	138.7	197.8	0.192	0.120	0.177	-0.375	-0.368	0.130	206.7	196.4	204.5	138.0	146.8	197.8	1.00	1.00	1.00	1.00	0.94	1.00	0.564920	1.000000	-
Rv2134c	-	7	128.9	156.9	142.5	125.9	125.8	179.7	-0.147	0.127	-0.008	-0.180	-0.181	0.317	142.5	169.0	166.2	146.9	135.5	193.6	0.90	0.93	0.86	0.86	0.93	0.93	0.979467	1.000000	-
Rv2135c	-	4	100.4	88.0	72.5	98.3	160.6	121.8	-0.087	-0.268	-0.530	-0.116	0.565	0.179	100.4	88.0	72.5	98.3	160.6	121.8	1.00	1.00	1.00	1.00	1.00	1.00	0.055254	0.505653	-
Rv2136c	uppP	12	117.4	130.9	120.6	112.8	132.6	141.9	-0.098	0.052	-0.061	-0.154	0.071	0.165	162.6	165.3	180.9	162.4	167.5	212.8	0.72	0.79	0.67	0.69	0.79	0.67	0.972655	1.000000	-
Rv2137c	-	6	131.3	102.8	121.4	132.1	104.7	112.1	0.155	-0.183	0.046	0.164	-0.158	-0.064	131.3	123.4	132.4	139.9	125.6	112.1	1.00	0.83	0.92	0.94	0.83	1.00	0.633222	1.000000	-
Rv2138	lppL	18	26.6	40.0	25.6	30.8	43.3	34.5	-0.285	0.227	-0.328	-0.105	0.328	0.039	47.8	57.6	51.3	50.3	55.6	42.8	0.56	0.69	0.50	0.61	0.78	0.81	0.329223	1.000000	-
Rv2139	pyrD	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2140c	TB18.6	9	160.5	193.4	150.5	188.7	146.7	202.3	-0.111	0.151	-0.201	0.117	-0.236	0.214	180.5	193.4	193.5	212.3	165.1	202.3	0.89	1.00	0.78	0.89	0.89	1.00	0.563422	1.000000	-
Rv2141c	-	18	154.9	126.4	141.8	143.4	129.2	134.1	0.158	-0.125	0.035	0.050	-0.095	-0.043	178.0	142.2	154.7	161.3	150.0	146.3	0.87	0.89	0.92	0.89	0.86	0.92	0.997335	1.000000	-
Rv2142c	-	13	276.6	205.1	241.1	237.7	219.9	249.7	0.210	-0.212	0.016	-0.004	-0.114	0.066	337.1	222.2	272.6	257.6	228.7	270.5	0.82	0.92	0.88	0.92	0.96	0.92	0.889434	1.000000	-
Rv2143	-	13	275.1	256.5	281.4	264.9	256.6	258.7	0.050	-0.049	0.082	-0.003	-0.049	-0.037	298.1	277.9	304.8	286.9	278.0	269.0	0.92	0.92	0.92	0.92	0.92	0.96	0.999995	1.000000	-
Rv2144c	-	4	101.0	141.3	121.2	122.8	179.1	136.1	-0.387	0.079	-0.136	-0.116	0.409	0.026	110.1	161.5	121.2	163.8	204.6	136.1	0.92	0.88	1.00	0.75	0.88	1.00	0.304638	1.000000	-
Rv2145c	wag31	10	0.0	1.0	1.5	0.0	0.5	1.6	-0.204	0.058	0.186	-0.204	-0.079	0.187	0.0	19.9	31.0	0.0	9.0	15.6	0.00	0.05	0.05	0.00	0.05	0.10	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2146c	-	1	255.8	378.5	275.2	264.9	296.0	304.0	-0.206	0.351	-0.102	-0.156	0.001	0.039	255.8	378.5	275.2	264.9	296.0	304.0	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2147c	-	15	2.1	2.0	3.1	0.6	3.5	2.0	-0.023	-0.041	0.171	-0.375	0.233	-0.042	31.7	30.4	47.0	25.9	35.0	30.4	0.07	0.07	0.07	0.02	0.10	0.07	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2148c	-	5	207.2	181.0	184.1	171.9	180.0	167.3	0.183	-0.007	0.017	-0.080	-0.015	-0.117	207.2	181.0	184.1	171.9	180.0	167.3	1.00	1.00	1.00	1.00	1.00	1.00	0.996463	1.000000	-
Rv2149c	yfiH	5	198.1	170.7	226.4	209.9	221.2	220.5	-0.067	-0.276	0.121	0.014	0.088	0.084	247.7	213.4	226.4	262.4	276.6	275.7	0.80	0.80	1.00	0.80	0.80	0.80	0.525086	1.000000	-
Rv2150c	ftsZ	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2151c	ftsQ	6	34.7	52.7	66.3	40.7	42.4	50.3	-0.412	0.126	0.432	-0.209	-0.157	0.065	125.0	158.1	199.0	122.2	127.3	150.9	0.28	0.33	0.33	0.33	0.33	0.33	0.992505	1.000000	-
Rv2152c	murC	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2153c	murG	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2154c	ftsW	15	60.2	44.1	50.3	50.2	49.4	48.6	0.232	-0.176	-0.003	-0.007	-0.028	-0.048	902.3	661.5	755.2	564.9	494.0	729.6	0.07	0.07	0.07	0.09	0.10	0.07	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2155c	murD	18	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2156c	mraY	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2157c	murF	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2158c	murE	10	1.5	0.5	0.0	0.0	0.0	0.0	0.286	0.048	-0.094	-0.094	-0.094	-0.094	22.6	10.4	0.0	0.0	0.0	0.0	0.07	0.05	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2159c	-	5	209.0	234.7	212.8	197.1	177.8	198.4	0.027	0.191	0.053	-0.055	-0.200	-0.046	209.0	234.7	212.8	197.1	177.8	198.4	1.00	1.00	1.00	1.00	1.00	1.00	0.880597	1.000000	-
Rv2160A	-	4	111.0	119.8	132.0	98.1	150.2	137.1	-0.161	-0.056	0.079	-0.331	0.259	0.131	166.5	159.7	176.0	147.1	150.2	137.1	0.67	0.75	0.75	0.67	1.00	1.00	0.553711	1.000000	-
Rv2160c	-	2	100.0	117.3	137.3	83.6	123.6	151.6	-0.238	-0.019	0.200	-0.484	0.054	0.338	200.1	234.5	274.6	167.2	123.6	151.6	0.50	0.50	0.50	0.50	1.00	1.00	0.298686	1.000000	-
Rv2161c	-	8	300.3	270.4	281.4	221.8	212.6	268.7	0.209	0.060	0.116	-0.220	-0.280	0.051	300.3	270.4	281.4	221.8	212.6	268.7	1.00	1.00	1.00	1.00	1.00	1.00	0.495620	1.000000	-
Rv2162c	PE_PGRS38	13	218.1	188.1	202.0	203.8	193.5	176.4	0.143	-0.065	0.035	0.048	-0.025	-0.155	229.8	203.8	228.3	220.7	209.6	191.1	0.95	0.92	0.88	0.92	0.92	0.92	0.999274	1.000000	-
Rv2163c	pbpB	29	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2164c	-	10	6.8	7.7	3.4	9.3	8.8	6.8	-0.047	0.060	-0.524	0.240	0.189	-0.040	67.5	38.3	34.4	56.1	35.4	34.0	0.10	0.20	0.10	0.17	0.25	0.20	0.824134	1.000000	-
Rv2165c	mraW	18	23.4	34.5	32.7	30.7	35.5	22.2	-0.295	0.181	0.113	0.038	0.217	-0.358	45.1	51.7	51.1	55.3	53.2	36.3	0.52	0.67	0.64	0.56	0.67	0.61	0.596704	1.000000	-
Rv2166c	-	7	6.7	19.6	15.1	13.5	14.3	16.0	-0.711	0.357	0.068	-0.055	0.006	0.129	23.6	27.5	35.3	40.5	50.1	37.4	0.29	0.71	0.43	0.33	0.29	0.43	0.216075	1.000000	-
Rv2167c	-	24	266.9	276.4	303.7	280.6	280.4	285.6	-0.079	-0.030	0.104	-0.009	-0.010	0.017	325.7	331.7	373.8	342.4	336.4	318.8	0.82	0.83	0.81	0.82	0.83	0.90	0.996538	1.000000	-
Rv2168c	-	4	193.6	230.7	214.3	261.8	213.0	147.2	-0.115	0.132	0.028	0.311	0.019	-0.499	193.6	230.7	214.3	261.8	213.0	147.2	1.00	1.00	1.00	1.00	1.00	1.00	0.577732	1.000000	-
Rv2169c	-	5	7.5	25.2	12.5	41.4	64.4	23.4	-1.449	-0.172	-0.961	0.445	1.027	-0.264	22.4	28.0	20.8	51.7	64.4	29.2	0.33	0.90	0.60	0.80	1.00	0.80	0.000295	0.006775	-
Rv2170	-	12	184.2	168.7	181.7	135.3	135.4	136.7	0.224	0.101	0.205	-0.208	-0.207	-0.193	189.5	184.0	189.6	139.1	141.3	136.7	0.97	0.92	0.96	0.97	0.96	1.00	0.769210	1.000000	-
Rv2171	lppM	8	97.6	93.5	101.1	93.7	91.0	84.2	0.059	-0.001	0.107	0.002	-0.037	-0.143	156.2	149.5	134.8	132.3	132.4	96.3	0.62	0.62	0.75	0.71	0.69	0.88	0.865919	1.000000	-
Rv2172c	-	16	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2173	idsA2	17	47.1	26.8	41.9	40.4	41.4	32.1	0.268	-0.446	0.115	0.069	0.101	-0.223	63.3	41.4	57.0	54.2	56.3	39.0	0.75	0.65	0.74	0.75	0.74	0.82	0.536929	1.000000	-
Rv2174	-	22	1.1	0.0	0.3	0.0	0.0	0.2	0.214	-0.077	0.003	-0.077	-0.077	-0.008	24.6	0.0	12.6	0.0	0.0	10.8	0.05	0.00	0.02	0.00	0.00	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2175c	-	5	67.0	126.3	119.4	123.0	109.8	107.9	-0.661	0.205	0.127	0.168	0.011	-0.012	77.4	126.3	132.7	123.0	109.8	107.9	0.87	1.00	0.90	1.00	1.00	1.00	0.430407	1.000000	-
Rv2176	pknL	21	97.2	80.0	78.2	88.1	91.1	96.9	0.127	-0.139	-0.170	-0.007	0.038	0.123	107.4	90.8	96.6	97.4	106.3	119.7	0.90	0.88	0.81	0.90	0.86	0.81	0.628391	1.000000	-
Rv2177c	-	6	215.6	172.8	224.2	238.5	192.8	209.5	0.045	-0.267	0.100	0.187	-0.113	0.004	215.6	188.5	244.6	252.5	192.8	209.5	1.00	0.92	0.92	0.94	1.00	1.00	0.913508	1.000000	-
Rv2178c	aroG	15	0.0	0.3	0.0	0.3	0.0	0.0	-0.031	0.062	-0.031	0.060	-0.031	-0.031	0.0	10.0	0.0	14.8	0.0	0.0	0.00	0.03	0.00	0.02	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2179c	-	5	8.8	19.3	34.4	81.3	76.0	11.3	-1.656	-0.841	-0.143	0.987	0.896	-1.414	33.1	21.4	38.2	81.3	76.0	16.2	0.27	0.90	0.90	1.00	1.00	0.70	0.000000	0.000000	-
Rv2180c	-	11	226.5	186.7	199.3	226.0	198.9	187.6	0.146	-0.126	-0.034	0.143	-0.037	-0.119	249.2	195.6	230.8	226.0	198.9	187.6	0.91	0.95	0.86	1.00	1.00	1.00	0.808050	1.000000	-
Rv2181	-	18	170.4	152.2	177.3	192.5	182.3	139.0	0.012	-0.146	0.068	0.183	0.107	-0.273	214.0	182.6	212.8	231.0	211.8	161.4	0.80	0.83	0.83	0.83	0.86	0.86	0.983108	1.000000	-
Rv2182c	-	18	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2183c	-	4	63.9	75.0	77.3	97.7	69.9	87.0	-0.276	-0.061	-0.021	0.299	-0.156	0.141	85.3	85.7	103.0	130.3	79.9	87.0	0.75	0.88	0.75	0.75	0.88	1.00	0.821957	1.000000	-
Rv2184c	-	16	129.4	142.0	120.5	145.9	126.2	110.6	0.003	0.132	-0.095	0.171	-0.032	-0.214	144.5	156.6	124.4	166.8	130.3	122.0	0.90	0.91	0.97	0.88	0.97	0.91	0.561913	1.000000	-
Rv2185c	TB16.3	13	69.8	96.0	57.6	83.1	83.0	81.5	-0.159	0.274	-0.416	0.077	0.076	0.051	77.8	99.8	74.9	92.6	89.9	88.3	0.90	0.96	0.77	0.90	0.92	0.92	0.644142	1.000000	-
Rv2186c	-	8	0.7	0.6	0.8	0.6	0.9	1.3	-0.033	-0.048	-0.006	-0.050	0.023	0.107	16.4	10.0	12.6	14.8	14.5	10.1	0.04	0.06	0.06	0.04	0.06	0.12	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2187	fadD15	31	149.3	127.6	132.5	133.2	125.2	142.9	0.139	-0.080	-0.028	-0.020	-0.105	0.078	159.6	129.7	149.3	139.2	131.6	150.1	0.94	0.98	0.89	0.96	0.95	0.95	0.761849	1.000000	-
Rv2188c	-	16	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2189c	-	10	104.6	114.4	116.1	69.5	96.0	82.9	0.100	0.223	0.244	-0.457	-0.017	-0.218	142.6	143.0	178.5	148.9	113.0	103.7	0.73	0.80	0.65	0.47	0.85	0.80	0.213491	1.000000	-
Rv2190c	-	16	96.1	121.9	85.2	99.7	98.1	89.8	-0.034	0.295	-0.198	0.018	-0.005	-0.127	115.3	134.5	109.1	111.3	112.1	95.7	0.83	0.91	0.78	0.90	0.88	0.94	0.778822	1.000000	-
Rv2191	-	25	251.3	256.4	260.6	244.0	215.5	213.4	0.064	0.092	0.115	0.022	-0.153	-0.167	273.2	267.1	277.2	254.1	229.3	222.3	0.92	0.96	0.94	0.96	0.94	0.96	0.995469	1.000000	-
Rv2192c	trpD	7	0.0	0.7	0.9	0.0	0.0	0.0	-0.076	0.117	0.163	-0.076	-0.076	-0.076	0.0	10.0	12.6	0.0	0.0	0.0	0.00	0.07	0.07	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2193	ctaE	14	5.4	4.7	5.4	1.4	1.3	3.7	0.263	0.172	0.265	-0.436	-0.457	0.006	17.3	14.7	30.1	19.3	12.0	17.1	0.31	0.32	0.18	0.07	0.11	0.21	0.000678	0.014008	-
Rv2194	qcrC	11	3.4	6.5	4.3	1.7	0.8	3.8	0.003	0.450	0.139	-0.334	-0.534	0.066	18.9	15.9	18.8	18.5	9.0	21.0	0.18	0.41	0.23	0.09	0.09	0.18	0.111757	0.785054	-
Rv2195	qcrA	21	2.2	1.9	2.8	0.0	0.0	2.3	0.134	0.088	0.263	-0.386	-0.386	0.150	15.2	10.2	17.0	0.0	0.0	11.8	0.14	0.19	0.17	0.00	0.00	0.19	0.000003	0.000110	-
Rv2196	qcrB	29	11.8	10.7	10.3	7.8	6.7	11.4	0.184	0.086	0.050	-0.204	-0.344	0.152	68.5	36.5	74.8	75.9	64.4	36.9	0.17	0.29	0.14	0.10	0.10	0.31	0.017390	0.212194	-
Rv2197c	-	10	189.4	159.2	203.7	150.6	176.9	134.3	0.160	-0.083	0.262	-0.162	0.064	-0.321	195.9	159.2	226.3	161.3	196.6	141.4	0.97	1.00	0.90	0.93	0.90	0.95	0.770142	1.000000	-
Rv2198c	mmpS3	14	13.9	29.9	27.2	37.8	58.7	12.7	-0.888	-0.006	-0.122	0.290	0.863	-0.988	25.4	32.2	40.1	40.7	60.9	16.1	0.55	0.93	0.68	0.93	0.96	0.79	0.000000	0.000000	-
Rv2199c	-	6	24.6	23.0	23.9	21.8	23.8	17.9	0.105	0.027	0.072	-0.037	0.066	-0.263	110.6	55.2	71.6	130.7	142.6	43.0	0.22	0.42	0.33	0.17	0.17	0.42	0.530534	1.000000	-
Rv2200c	ctaC	18	1.0	0.3	1.4	0.0	0.0	0.3	0.134	-0.060	0.218	-0.138	-0.138	-0.054	18.7	10.0	25.2	0.0	0.0	10.8	0.06	0.03	0.06	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2201	asnB	27	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2202c	cbhK	17	9.2	19.2	12.5	28.2	50.1	13.5	-0.930	-0.166	-0.630	0.292	1.022	-0.551	20.5	26.1	28.4	33.4	51.6	20.0	0.45	0.74	0.44	0.84	0.97	0.68	0.000000	0.000000	-
Rv2203	-	12	203.8	225.0	215.3	220.0	214.6	185.9	-0.047	0.092	0.030	0.061	0.026	-0.177	203.8	225.0	215.3	220.0	223.9	185.9	1.00	1.00	1.00	1.00	0.96	1.00	0.927590	1.000000	-
Rv2204c	-	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2205c	-	9	122.6	110.5	120.7	130.8	128.5	117.9	0.009	-0.136	-0.013	0.099	0.074	-0.046	127.3	110.5	120.7	141.3	144.6	117.9	0.96	1.00	1.00	0.93	0.89	1.00	0.604356	1.000000	-
Rv2206	-	9	128.4	93.6	87.6	105.6	90.6	103.0	0.326	-0.111	-0.202	0.055	-0.156	0.021	144.5	93.6	92.7	105.6	90.6	103.0	0.89	1.00	0.94	1.00	1.00	1.00	0.175464	1.000000	-
Rv2207	cobT	8	157.5	146.7	154.3	102.0	96.3	107.5	0.296	0.197	0.267	-0.307	-0.386	-0.235	157.5	156.5	164.5	116.6	110.1	107.5	1.00	0.94	0.94	0.88	0.88	1.00	0.150413	0.945649	-
Rv2208	cobS	9	96.4	78.0	107.3	75.4	99.9	103.0	0.045	-0.244	0.192	-0.291	0.093	0.135	130.2	100.3	138.0	84.8	112.3	115.9	0.74	0.78	0.78	0.89	0.89	0.89	0.752714	1.000000	-
Rv2209	-	23	228.6	241.9	256.2	233.9	237.7	240.7	-0.068	0.012	0.093	-0.036	-0.012	0.005	250.4	241.9	287.4	237.3	248.5	251.6	0.91	1.00	0.89	0.99	0.96	0.96	0.327514	1.000000	-
Rv2210c	ilvE	21	14.2	12.9	10.7	6.8	1.4	21.3	0.241	0.146	-0.047	-0.461	-1.338	0.698	25.5	21.8	28.1	18.6	11.9	28.9	0.56	0.60	0.38	0.37	0.12	0.74	0.000000	0.000000	-
Rv2211c	gcvT	17	12.6	24.9	8.3	35.7	33.1	22.5	-0.658	0.101	-1.071	0.548	0.452	-0.017	26.9	29.2	35.1	45.5	40.2	29.5	0.47	0.85	0.24	0.78	0.82	0.76	0.000000	0.000002	-
Rv2212	-	9	230.3	186.6	188.0	224.2	246.8	184.9	0.129	-0.167	-0.157	0.091	0.227	-0.180	282.7	197.6	225.6	242.1	246.8	256.1	0.81	0.94	0.83	0.93	1.00	0.72	0.325909	1.000000	-
Rv2213	pepB	12	152.5	150.1	211.1	188.6	185.3	161.2	-0.191	-0.213	0.265	0.107	0.082	-0.113	166.3	189.7	230.3	234.1	234.0	184.2	0.92	0.79	0.92	0.81	0.79	0.88	0.479499	1.000000	-
Rv2214c	ephD	26	105.5	91.1	120.3	100.6	110.1	78.1	0.060	-0.141	0.242	-0.005	0.120	-0.351	128.6	98.7	149.0	120.7	127.3	96.7	0.82	0.92	0.81	0.83	0.87	0.81	0.441688	1.000000	-
Rv2215	dlaT	13	4.5	4.3	1.9	0.3	0.6	2.3	0.371	0.348	-0.078	-0.458	-0.399	0.001	21.8	18.7	25.2	13.0	14.5	10.1	0.21	0.23	0.08	0.03	0.04	0.23	0.005746	0.089202	-
Rv2216	-	11	376.7	299.2	318.2	311.3	295.6	326.3	0.227	-0.101	-0.014	-0.045	-0.118	0.022	401.0	346.4	350.0	321.0	295.6	341.8	0.94	0.86	0.91	0.97	1.00	0.95	0.960846	1.000000	-
Rv2217	lipB	9	14.7	16.4	2.8	11.8	4.2	8.0	0.429	0.544	-0.908	0.200	-0.669	-0.177	99.4	147.3	50.5	106.5	25.3	47.8	0.15	0.11	0.06	0.11	0.17	0.17	0.319336	1.000000	-
Rv2218	lipA	11	0.4	2.7	0.6	0.4	0.0	0.5	-0.107	0.425	-0.049	-0.085	-0.205	-0.070	11.6	12.1	12.6	14.4	0.0	10.8	0.03	0.23	0.05	0.03	0.00	0.05	0.525337	1.000000	-
Rv2219	-	7	3.0	8.0	0.0	4.7	6.6	3.6	-0.224	0.479	-0.895	0.067	0.315	-0.120	15.6	18.6	0.0	16.6	18.4	12.5	0.19	0.43	0.00	0.29	0.36	0.29	0.158711	0.976193	-
Rv2219A	-	2	124.6	82.1	87.7	65.1	38.8	61.5	0.666	0.094	0.184	-0.220	-0.898	-0.296	124.6	82.1	87.7	65.1	38.8	61.5	1.00	1.00	1.00	1.00	1.00	1.00	0.000613	0.012941	-
Rv2220	glnA1	25	0.3	0.2	0.0	0.0	0.0	0.0	0.063	0.032	-0.024	-0.024	-0.024	-0.024	23.3	10.0	0.0	0.0	0.0	0.0	0.01	0.02	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2221c	glnE	35	5.7	7.8	8.7	1.3	1.2	4.8	0.112	0.371	0.459	-0.650	-0.672	-0.019	31.7	23.9	30.3	15.5	14.4	18.7	0.18	0.33	0.29	0.09	0.09	0.26	0.000004	0.000137	-
Rv2222c	glnA2	15	105.0	159.1	133.6	149.8	198.2	145.9	-0.481	0.095	-0.148	0.011	0.404	-0.026	109.9	164.6	143.1	156.7	198.2	156.3	0.96	0.97	0.93	0.96	1.00	0.93	0.099294	0.741066	-
Rv2223c	-	27	210.1	186.4	187.6	198.3	195.7	203.0	0.092	-0.076	-0.068	0.010	-0.008	0.043	233.1	201.4	225.1	236.2	211.4	219.2	0.90	0.93	0.83	0.84	0.93	0.93	0.848335	1.000000	-
Rv2224c	-	26	228.1	215.2	199.2	241.1	246.5	199.8	0.041	-0.042	-0.150	0.119	0.150	-0.146	243.7	228.4	220.4	272.5	267.0	203.7	0.94	0.94	0.90	0.88	0.92	0.98	0.309326	1.000000	-
Rv2225	panB	11	121.4	134.7	132.6	113.6	121.1	150.7	-0.084	0.060	0.038	-0.177	-0.088	0.217	133.5	134.7	138.9	120.9	133.2	157.9	0.91	1.00	0.95	0.94	0.91	0.95	0.908212	1.000000	-
Rv2226	-	24	143.8	144.0	149.0	143.0	155.4	124.7	0.005	0.007	0.054	-0.003	0.113	-0.194	184.9	177.2	178.8	151.5	173.4	145.9	0.78	0.81	0.83	0.94	0.90	0.85	0.342092	1.000000	-
Rv2227	-	18	97.5	109.2	118.5	120.5	110.5	107.6	-0.174	-0.018	0.095	0.118	-0.002	-0.038	114.5	131.1	137.6	147.8	128.3	121.1	0.85	0.83	0.86	0.81	0.86	0.89	0.971967	1.000000	-
Rv2228c	-	16	11.9	17.6	11.9	9.2	12.9	14.0	-0.087	0.333	-0.084	-0.332	-0.000	0.086	33.5	46.9	29.3	24.6	34.4	37.4	0.35	0.38	0.41	0.38	0.38	0.38	0.353089	1.000000	-
Rv2229c	-	4	19.9	17.9	36.5	24.9	14.0	12.8	-0.065	-0.185	0.676	0.202	-0.453	-0.544	34.0	23.8	73.1	29.9	18.7	20.5	0.58	0.75	0.50	0.83	0.75	0.62	0.058903	0.530526	-
Rv2230c	-	15	82.0	83.8	84.3	72.1	92.1	66.2	0.032	0.062	0.069	-0.142	0.190	-0.257	94.7	104.8	101.1	92.7	106.3	90.3	0.87	0.80	0.83	0.78	0.87	0.73	0.823987	1.000000	-
Rv2231c	cobC	15	95.5	67.0	70.8	80.0	74.7	74.2	0.292	-0.187	-0.115	0.051	-0.041	-0.050	113.0	95.8	96.5	94.7	83.0	85.6	0.84	0.70	0.73	0.84	0.90	0.87	0.720408	1.000000	-
Rv2232	-	10	86.5	87.3	88.2	100.6	99.6	59.5	-0.007	0.005	0.020	0.199	0.186	-0.511	117.9	109.1	110.3	137.1	117.2	91.6	0.73	0.80	0.80	0.73	0.85	0.65	0.853668	1.000000	-
Rv2234	ptpA	7	71.6	57.5	49.2	76.3	71.9	63.5	0.130	-0.164	-0.370	0.216	0.136	-0.031	83.5	67.0	68.8	94.3	83.9	63.5	0.86	0.86	0.71	0.81	0.86	1.00	0.526768	1.000000	-
Rv2235	-	14	5.4	8.4	9.8	1.0	2.5	8.2	-0.060	0.300	0.442	-0.868	-0.533	0.277	28.6	15.7	30.4	13.5	11.8	17.6	0.19	0.54	0.32	0.07	0.21	0.46	0.000024	0.000695	-
Rv2236c	cobD	10	50.7	44.1	67.7	63.6	55.7	45.1	-0.095	-0.276	0.290	0.205	0.030	-0.249	76.1	63.0	79.7	100.4	92.9	64.4	0.67	0.70	0.85	0.63	0.60	0.70	0.359778	1.000000	-
Rv2237	-	17	118.3	103.1	120.7	105.7	106.5	125.3	0.060	-0.130	0.088	-0.096	-0.085	0.140	125.7	125.2	136.8	122.5	116.8	133.1	0.94	0.82	0.88	0.86	0.91	0.94	0.837355	1.000000	-
Rv2238c	ahpE	4	17.3	9.1	31.3	23.8	26.2	12.8	-0.168	-0.834	0.532	0.201	0.313	-0.492	26.0	36.3	41.7	35.7	29.9	34.2	0.67	0.25	0.75	0.67	0.88	0.38	0.171337	1.000000	-
Rv2239c	-	4	45.2	88.7	61.8	125.4	178.4	37.5	-0.912	-0.012	-0.501	0.464	0.957	-1.152	49.3	88.7	70.6	125.4	178.4	42.9	0.92	1.00	0.88	1.00	1.00	0.88	0.045937	0.452561	-
Rv2240c	-	11	197.6	212.4	231.3	264.8	208.1	167.4	-0.110	-0.008	0.113	0.304	-0.037	-0.342	224.8	245.9	282.8	291.3	240.9	167.4	0.88	0.86	0.82	0.91	0.86	1.00	0.358284	1.000000	-
Rv2241	aceE	53	41.9	62.1	28.8	36.8	26.9	46.7	0.042	0.560	-0.430	-0.123	-0.515	0.184	60.6	68.6	49.2	46.1	38.5	52.1	0.69	0.91	0.58	0.80	0.70	0.90	0.000000	0.000000	-
Rv2242	-	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2243	fabD	5	0.0	0.0	1.3	0.0	0.0	0.0	-0.059	-0.059	0.265	-0.059	-0.059	-0.059	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.10	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2244	acpP	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2245	kasA	13	0.0	0.0	0.0	0.0	0.0	0.4	-0.020	-0.020	-0.020	-0.020	-0.020	0.095	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2246	kasB	14	0.0	0.0	0.0	1.7	7.1	0.0	-0.369	-0.369	-0.369	0.043	0.905	-0.369	0.0	0.0	0.0	17.4	19.9	0.0	0.00	0.00	0.00	0.10	0.36	0.00	0.000001	0.000022	-
Rv2247	accD6	13	0.0	0.0	0.5	0.0	1.3	0.4	-0.100	-0.100	0.034	-0.100	0.222	0.015	0.0	0.0	12.6	0.0	10.8	10.8	0.00	0.00	0.04	0.00	0.12	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2248	-	11	44.8	47.2	49.3	62.4	45.6	56.4	-0.168	-0.099	-0.043	0.268	-0.145	0.133	70.4	57.7	60.2	71.0	52.8	72.9	0.64	0.82	0.82	0.88	0.86	0.77	0.541128	1.000000	-
Rv2249c	glpD1	18	104.2	73.6	87.0	68.6	69.6	87.4	0.332	-0.142	0.085	-0.236	-0.218	0.091	137.2	110.4	111.9	115.8	83.5	101.5	0.76	0.67	0.78	0.59	0.83	0.86	0.109423	0.783839	-
Rv2250c	-	8	178.7	141.4	137.5	148.4	140.0	150.6	0.250	-0.077	-0.116	-0.010	-0.091	0.011	178.7	174.0	169.2	148.4	140.0	150.6	1.00	0.81	0.81	1.00	1.00	1.00	0.094390	0.717365	-
Rv2250A	-	3	75.5	37.3	61.6	48.3	74.9	22.7	0.463	-0.464	0.189	-0.132	0.453	-1.076	75.5	44.8	61.6	72.4	74.9	27.2	1.00	0.83	1.00	0.67	1.00	0.83	0.075008	0.623916	-
Rv2251	-	8	129.5	79.0	128.4	100.8	101.6	89.6	0.292	-0.386	0.281	-0.053	-0.043	-0.215	135.1	105.3	146.7	110.0	116.1	102.4	0.96	0.75	0.88	0.92	0.88	0.88	0.761959	1.000000	-
Rv2252	-	17	27.2	30.4	38.0	23.4	33.6	24.6	-0.102	0.036	0.314	-0.280	0.161	-0.221	39.6	51.7	56.1	36.2	54.5	44.1	0.69	0.59	0.68	0.65	0.62	0.56	0.145275	0.930416	-
Rv2253	-	12	15.3	21.2	17.5	23.5	32.6	30.4	-0.484	-0.117	-0.339	0.004	0.404	0.317	46.0	42.5	52.5	56.4	71.2	56.2	0.33	0.50	0.33	0.42	0.46	0.54	0.815255	1.000000	-
Rv2254c	-	5	165.6	43.6	128.0	140.2	159.8	86.8	0.441	-1.371	0.082	0.209	0.391	-0.453	207.0	109.0	142.2	175.3	199.8	124.0	0.80	0.40	0.90	0.80	0.80	0.70	0.342862	1.000000	-
Rv2255c	-	1	68.2	77.3	108.9	122.8	46.0	30.4	-0.138	0.030	0.500	0.665	-0.662	-1.189	68.2	77.3	108.9	122.8	46.0	30.4	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2256c	-	6	0.0	4.2	5.3	0.0	0.0	2.5	-0.484	0.400	0.553	-0.484	-0.484	0.095	0.0	12.7	31.5	0.0	0.0	9.9	0.00	0.33	0.17	0.00	0.00	0.25	0.009222	0.131412	-
Rv2257c	-	7	146.3	157.2	158.6	87.0	105.4	164.9	0.096	0.196	0.209	-0.622	-0.359	0.263	170.7	169.2	185.1	101.5	123.0	164.9	0.86	0.93	0.86	0.86	0.86	1.00	0.571786	1.000000	-
Rv2258c	-	13	237.9	226.1	224.6	190.2	186.6	214.3	0.154	0.082	0.073	-0.161	-0.188	0.006	237.9	235.1	224.6	200.5	186.6	214.3	1.00	0.96	1.00	0.95	1.00	1.00	0.751937	1.000000	-
Rv2259	adhE2	13	51.4	49.7	62.9	52.5	48.7	58.2	-0.064	-0.107	0.206	-0.036	-0.133	0.102	69.1	56.2	77.9	66.0	52.8	58.2	0.74	0.88	0.81	0.79	0.92	1.00	0.237551	1.000000	-
Rv2260	-	5	41.2	60.1	71.2	61.0	79.6	70.6	-0.577	-0.083	0.144	-0.063	0.295	0.133	56.2	60.1	89.0	91.5	88.5	78.5	0.73	1.00	0.80	0.67	0.90	0.90	0.298147	1.000000	-
Rv2261c	-	4	173.7	216.1	236.7	244.5	268.1	239.6	-0.393	-0.087	0.042	0.088	0.218	0.059	173.7	216.1	236.7	244.5	268.1	239.6	1.00	1.00	1.00	1.00	1.00	1.00	0.676588	1.000000	-
Rv2262c	-	14	223.6	237.3	232.9	214.8	203.9	201.0	0.030	0.114	0.087	-0.027	-0.100	-0.120	240.8	255.6	250.8	250.6	237.9	225.1	0.93	0.93	0.93	0.86	0.86	0.89	0.967386	1.000000	-
Rv2263	-	12	255.3	212.7	222.5	247.5	234.8	234.9	0.120	-0.138	-0.075	0.076	0.001	0.001	255.3	212.7	242.7	270.0	234.8	256.2	1.00	1.00	0.92	0.92	1.00	0.92	0.269675	1.000000	-
Rv2264c	-	26	145.9	162.8	139.2	167.0	142.8	159.8	-0.065	0.088	-0.131	0.123	-0.096	0.061	175.1	169.3	172.4	186.1	145.6	169.6	0.83	0.96	0.81	0.90	0.98	0.94	0.150735	0.945649	-
Rv2265	-	14	193.2	176.9	154.2	178.9	163.7	184.4	0.137	0.014	-0.179	0.029	-0.095	0.071	193.2	176.9	159.9	178.9	163.7	184.4	1.00	1.00	0.96	1.00	1.00	1.00	0.825694	1.000000	-
Rv2266	cyp124	16	132.8	114.7	125.5	128.7	116.1	139.5	0.071	-0.133	-0.008	0.027	-0.115	0.139	148.3	122.3	133.9	137.3	119.9	144.0	0.90	0.94	0.94	0.94	0.97	0.97	0.965179	1.000000	-
Rv2267c	-	35	27.6	27.1	22.0	28.6	29.7	30.7	0.001	-0.023	-0.273	0.042	0.088	0.132	47.6	35.8	45.3	42.3	38.5	43.9	0.58	0.76	0.49	0.68	0.77	0.70	0.092139	0.708520	-
Rv2268c	cyp128	25	64.5	65.4	75.3	67.2	57.4	52.4	0.017	0.036	0.225	0.072	-0.138	-0.261	84.9	93.5	96.6	77.6	79.8	68.9	0.76	0.70	0.78	0.87	0.72	0.76	0.326776	1.000000	-
Rv2269c	-	11	76.0	100.1	92.7	104.0	86.2	87.8	-0.248	0.129	0.023	0.181	-0.076	-0.050	125.4	146.9	127.5	149.3	135.5	128.8	0.61	0.68	0.73	0.70	0.64	0.68	0.995954	1.000000	-
Rv2270	lppN	10	90.6	99.9	100.2	84.6	92.7	94.2	-0.046	0.088	0.092	-0.139	-0.014	0.007	118.2	111.0	117.9	90.7	115.9	104.6	0.77	0.90	0.85	0.93	0.80	0.90	0.746470	1.000000	-
Rv2271	-	5	113.4	119.0	114.2	112.0	134.6	133.3	-0.090	-0.024	-0.081	-0.108	0.147	0.133	113.4	119.0	114.2	112.0	134.6	133.3	1.00	1.00	1.00	1.00	1.00	1.00	0.918053	1.000000	-
Rv2272	-	4	94.2	78.7	65.0	92.8	53.9	51.6	0.353	0.107	-0.151	0.332	-0.400	-0.456	102.8	78.7	65.0	101.3	53.9	51.6	0.92	1.00	1.00	0.92	1.00	1.00	0.565031	1.000000	-
Rv2273	-	5	169.7	157.1	139.0	132.9	105.7	150.3	0.245	0.137	-0.034	-0.097	-0.413	0.074	212.1	196.4	154.5	132.9	132.2	150.3	0.80	0.80	0.90	1.00	0.80	1.00	0.230694	1.000000	-
Rv2274c	-	7	28.0	46.6	44.6	36.1	31.9	49.9	-0.431	0.213	0.155	-0.114	-0.273	0.303	36.8	54.4	48.0	42.2	40.5	63.5	0.76	0.86	0.93	0.86	0.79	0.79	0.313683	1.000000	-
Rv2275	-	17	37.5	54.3	52.7	54.3	52.4	45.4	-0.358	0.124	0.084	0.124	0.076	-0.111	59.7	65.9	64.0	67.6	71.2	57.2	0.63	0.82	0.82	0.80	0.74	0.79	0.622525	1.000000	-
Rv2276	cyp121	17	46.9	46.1	40.5	41.8	36.2	44.7	0.121	0.100	-0.068	-0.027	-0.213	0.060	64.6	60.3	57.4	49.6	45.5	54.3	0.73	0.76	0.71	0.84	0.79	0.82	0.891640	1.000000	-
Rv2277c	-	11	80.4	65.9	57.6	69.7	78.0	96.1	0.101	-0.168	-0.347	-0.092	0.060	0.345	132.6	103.5	70.4	104.5	107.3	151.1	0.61	0.64	0.82	0.67	0.73	0.64	0.164127	0.995236	-
Rv2278	-	4	220.2	229.3	208.1	226.0	210.1	156.7	0.077	0.135	-0.002	0.115	0.011	-0.400	220.2	229.3	208.1	226.0	210.1	156.7	1.00	1.00	1.00	1.00	1.00	1.00	0.883950	1.000000	-
Rv2279	-	21	289.1	290.7	324.8	306.5	291.0	303.2	-0.057	-0.049	0.109	0.026	-0.047	0.011	371.7	348.8	413.4	386.2	339.5	326.5	0.78	0.83	0.79	0.79	0.86	0.93	0.905993	1.000000	-
Rv2280	-	17	66.5	57.1	62.4	63.0	66.1	54.1	0.105	-0.100	0.019	0.031	0.095	-0.170	84.8	71.9	78.6	78.3	77.5	68.1	0.78	0.79	0.79	0.80	0.85	0.79	0.999758	1.000000	-
Rv2281	pitB	23	48.9	67.3	69.8	54.7	60.9	65.9	-0.298	0.127	0.175	-0.150	-0.007	0.097	71.8	110.6	103.6	78.6	84.9	81.9	0.68	0.61	0.67	0.70	0.72	0.80	0.296593	1.000000	-
Rv2282c	-	11	96.2	50.2	52.8	53.9	67.8	44.8	0.618	-0.257	-0.190	-0.164	0.143	-0.405	138.0	78.9	68.3	77.3	82.9	65.7	0.70	0.64	0.77	0.70	0.82	0.68	0.221955	1.000000	-
Rv2283	-	2	81.2	33.0	47.0	32.8	35.6	47.2	0.754	-0.430	0.025	-0.436	-0.333	0.030	81.2	33.0	62.7	39.4	35.6	47.2	1.00	1.00	0.75	0.83	1.00	1.00	0.302781	1.000000	-
Rv2284	lipM	26	96.1	95.5	92.5	98.0	99.0	89.4	0.015	0.006	-0.038	0.041	0.056	-0.084	117.2	107.9	111.9	107.6	109.6	105.7	0.82	0.88	0.83	0.91	0.90	0.85	0.970379	1.000000	-
Rv2285	-	20	130.6	133.8	120.2	131.9	137.2	130.3	-0.000	0.033	-0.116	0.013	0.068	-0.004	135.1	152.9	133.6	138.9	144.4	137.1	0.97	0.88	0.90	0.95	0.95	0.95	0.697059	1.000000	-
Rv2286c	-	9	182.2	133.1	167.3	167.1	156.1	164.9	0.167	-0.273	0.047	0.045	-0.050	0.027	246.0	171.1	200.8	214.9	165.3	164.9	0.74	0.78	0.83	0.78	0.94	1.00	0.334290	1.000000	-
Rv2287	yjcE	17	166.1	138.1	159.3	149.1	145.4	135.8	0.152	-0.106	0.094	0.001	-0.034	-0.128	192.5	156.5	186.7	172.8	159.4	144.3	0.86	0.88	0.85	0.86	0.91	0.94	0.991256	1.000000	-
Rv2288	-	4	92.4	114.6	102.9	89.4	103.5	93.1	-0.099	0.197	0.049	-0.145	0.057	-0.088	92.4	114.6	102.9	89.4	103.5	93.1	1.00	1.00	1.00	1.00	1.00	1.00	0.954327	1.000000	-
Rv2289	cdh	21	105.0	117.0	109.3	129.6	119.4	121.3	-0.149	0.002	-0.094	0.142	0.029	0.051	140.7	129.4	139.1	160.0	128.5	159.2	0.75	0.90	0.79	0.81	0.93	0.76	0.415216	1.000000	-
Rv2290	lppO	11	89.4	93.0	97.9	82.0	81.2	93.4	-0.002	0.053	0.123	-0.119	-0.133	0.059	147.4	113.7	143.6	108.3	89.3	108.2	0.61	0.82	0.68	0.76	0.91	0.86	0.538413	1.000000	-
Rv2291	sseB	16	105.0	90.7	108.3	128.7	120.9	95.1	-0.040	-0.242	0.003	0.241	0.154	-0.177	117.2	111.6	128.4	137.3	120.9	108.7	0.90	0.81	0.84	0.94	1.00	0.88	0.217396	1.000000	-
Rv2292c	-	2	90.0	56.3	122.1	74.7	61.3	73.9	0.165	-0.466	0.586	-0.088	-0.353	-0.104	90.0	56.3	162.9	74.7	61.3	73.9	1.00	1.00	0.75	1.00	1.00	1.00	0.524925	1.000000	-
Rv2293c	-	11	52.9	66.1	63.8	65.0	72.9	93.9	-0.356	-0.059	-0.107	-0.081	0.072	0.416	56.3	66.1	66.9	69.2	72.9	93.9	0.94	1.00	0.95	0.94	1.00	1.00	0.173451	1.000000	-
Rv2294	-	18	153.0	155.6	141.5	141.2	144.5	172.8	0.014	0.038	-0.094	-0.098	-0.066	0.185	162.0	164.7	145.6	149.5	153.0	177.7	0.94	0.94	0.97	0.94	0.94	0.97	0.974524	1.000000	-
Rv2295	-	10	26.7	28.6	25.3	35.4	30.7	43.5	-0.210	-0.128	-0.275	0.138	-0.041	0.401	34.9	30.1	36.2	44.3	30.7	43.5	0.77	0.95	0.70	0.80	1.00	1.00	0.015393	0.193140	-
Rv2296	-	15	151.0	154.9	124.1	155.6	136.5	153.7	0.048	0.083	-0.226	0.089	-0.094	0.072	194.2	185.8	132.9	184.2	151.6	192.2	0.78	0.83	0.93	0.84	0.90	0.80	0.393599	1.000000	-
Rv2297	-	8	74.0	88.0	81.6	89.0	85.1	87.3	-0.175	0.061	-0.041	0.076	0.014	0.049	104.4	117.4	118.8	101.7	90.7	99.7	0.71	0.75	0.69	0.88	0.94	0.88	0.842938	1.000000	-
Rv2298	-	16	222.3	188.1	207.2	198.0	215.4	187.2	0.128	-0.107	0.029	-0.035	0.083	-0.114	237.1	207.6	221.0	211.2	215.4	199.7	0.94	0.91	0.94	0.94	1.00	0.94	0.904675	1.000000	-
Rv2299c	htpG	24	121.5	146.5	138.8	132.3	129.6	145.5	-0.153	0.107	0.031	-0.035	-0.064	0.097	136.7	159.8	148.0	140.1	132.4	148.6	0.89	0.92	0.94	0.94	0.98	0.98	0.701771	1.000000	-
Rv2300c	-	14	36.0	40.8	28.9	35.0	37.2	39.3	-0.007	0.152	-0.283	-0.042	0.035	0.105	60.5	57.1	53.9	58.8	49.7	68.9	0.60	0.71	0.54	0.60	0.75	0.57	0.877230	1.000000	-
Rv2301	cut2	9	223.2	207.7	229.4	205.8	224.7	246.9	0.001	-0.100	0.040	-0.113	0.011	0.144	223.2	207.7	242.9	205.8	224.7	246.9	1.00	1.00	0.94	1.00	1.00	1.00	0.885666	1.000000	-
Rv2302	-	4	399.9	373.8	369.2	264.5	324.8	341.7	0.208	0.111	0.094	-0.380	-0.089	-0.016	399.9	373.8	369.2	264.5	324.8	341.7	1.00	1.00	1.00	1.00	1.00	1.00	0.723772	1.000000	-
Rv2303c	-	16	113.8	106.5	92.6	96.1	90.3	117.4	0.141	0.048	-0.143	-0.092	-0.178	0.184	133.2	121.7	118.5	109.8	99.6	144.6	0.85	0.88	0.78	0.88	0.91	0.81	0.886285	1.000000	-
Rv2304c	-	1	102.0	181.9	160.0	122.3	160.6	116.9	-0.445	0.360	0.180	-0.194	0.185	-0.257	102.0	181.9	160.0	122.3	160.6	116.9	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2305	-	8	201.9	215.2	172.8	170.1	206.6	215.0	0.035	0.125	-0.184	-0.206	0.068	0.124	201.9	215.2	172.8	170.1	206.6	215.0	1.00	1.00	1.00	1.00	1.00	1.00	0.802337	1.000000	-
Rv2306A	-	7	378.1	350.4	362.4	387.4	358.8	347.2	0.054	-0.055	-0.006	0.089	-0.021	-0.068	417.9	350.4	422.8	387.4	386.4	347.2	0.90	1.00	0.86	1.00	0.93	1.00	0.727763	1.000000	-
Rv2306B	-	5	158.2	158.1	144.7	114.7	121.6	129.3	0.193	0.192	0.069	-0.255	-0.174	-0.088	215.8	158.1	206.8	143.4	135.1	161.6	0.73	1.00	0.70	0.80	0.90	0.80	0.650180	1.000000	-
Rv2307c	-	18	156.0	163.9	163.5	176.7	173.7	178.5	-0.110	-0.040	-0.044	0.065	0.041	0.079	162.0	173.6	168.2	176.7	173.7	178.5	0.96	0.94	0.97	1.00	1.00	1.00	0.447810	1.000000	-
Rv2307A	-	3	306.3	323.5	286.3	216.4	377.8	300.9	0.021	0.098	-0.075	-0.471	0.319	-0.005	306.3	485.3	343.6	324.6	377.8	451.3	1.00	0.67	0.83	0.67	1.00	0.67	0.292364	1.000000	-
Rv2307B	-	20	37.2	28.6	50.7	44.2	40.4	51.0	-0.157	-0.486	0.245	0.066	-0.052	0.253	61.9	44.0	69.9	59.0	53.8	68.0	0.60	0.65	0.72	0.75	0.75	0.75	0.369258	1.000000	-
Rv2307D	-	5	113.4	115.6	113.2	106.1	125.3	149.0	-0.083	-0.057	-0.085	-0.176	0.055	0.296	141.7	115.6	113.2	106.1	156.6	149.0	0.80	1.00	1.00	1.00	0.80	1.00	0.128936	0.861735	-
Rv2308	-	16	34.2	38.5	32.3	31.8	35.3	40.0	-0.043	0.109	-0.115	-0.131	-0.002	0.158	60.8	58.7	60.7	52.7	53.8	55.7	0.56	0.66	0.53	0.60	0.66	0.72	0.996634	1.000000	-
Rv2309c	-	7	83.1	94.6	87.6	105.1	127.5	100.0	-0.248	-0.071	-0.177	0.073	0.341	0.005	134.3	132.5	136.2	138.0	198.4	127.3	0.62	0.71	0.64	0.76	0.64	0.79	0.969643	1.000000	-
Rv2309A	-	12	137.9	150.3	128.9	143.5	153.7	159.4	-0.075	0.045	-0.170	-0.021	0.075	0.126	146.1	164.0	140.6	156.5	167.6	173.9	0.94	0.92	0.92	0.92	0.92	0.92	0.983208	1.000000	-
Rv2310	-	3	119.3	86.6	100.0	130.4	96.8	61.6	0.255	-0.184	0.012	0.379	-0.032	-0.644	119.3	86.6	100.0	130.4	96.8	61.6	1.00	1.00	1.00	1.00	1.00	1.00	0.213941	1.000000	-
Rv2311	-	7	388.8	331.8	335.1	318.9	337.0	310.7	0.203	-0.022	-0.008	-0.079	-0.000	-0.116	388.8	331.8	335.1	318.9	337.0	310.7	1.00	1.00	1.00	1.00	1.00	1.00	0.675955	1.000000	-
Rv2312	-	3	255.2	251.1	228.4	242.0	184.4	213.5	0.153	0.130	-0.004	0.077	-0.306	-0.099	255.2	251.1	228.4	242.0	184.4	213.5	1.00	1.00	1.00	1.00	1.00	1.00	0.973502	1.000000	-
Rv2313c	-	9	295.7	291.3	274.8	317.8	308.7	297.2	-0.009	-0.030	-0.113	0.093	0.052	-0.002	362.9	327.8	309.1	357.5	396.9	314.7	0.81	0.89	0.89	0.89	0.78	0.94	0.947664	1.000000	-
Rv2314c	-	13	169.6	185.6	223.3	201.0	177.0	195.7	-0.175	-0.048	0.212	0.064	-0.115	0.027	183.7	241.3	241.9	270.4	219.1	221.2	0.92	0.77	0.92	0.74	0.81	0.88	0.254010	1.000000	-
Rv2315c	-	31	74.5	62.8	71.9	68.0	64.4	68.3	0.116	-0.113	0.070	-0.007	-0.079	-0.000	93.6	90.5	92.9	87.8	78.3	79.9	0.80	0.69	0.77	0.77	0.82	0.85	0.826403	1.000000	-
Rv2316	uspA	10	128.4	111.6	130.1	106.8	119.7	131.4	0.078	-0.116	0.097	-0.176	-0.018	0.110	160.5	131.3	173.5	118.7	159.7	138.3	0.80	0.85	0.75	0.90	0.75	0.95	0.659193	1.000000	-
Rv2317	uspB	12	43.6	38.2	69.5	50.1	45.5	41.9	-0.130	-0.298	0.488	0.053	-0.074	-0.179	68.2	57.3	79.4	69.4	57.4	62.9	0.64	0.67	0.88	0.72	0.79	0.67	0.587687	1.000000	-
Rv2318	uspC	30	44.5	52.4	51.8	44.4	41.1	48.5	-0.073	0.139	0.125	-0.078	-0.178	0.037	61.7	68.3	69.1	62.4	60.1	63.2	0.72	0.77	0.75	0.71	0.68	0.77	0.944343	1.000000	-
Rv2319c	-	14	103.1	87.2	94.6	92.0	87.3	80.0	0.176	-0.053	0.058	0.020	-0.052	-0.172	135.4	122.1	120.4	124.7	101.8	117.8	0.76	0.71	0.79	0.74	0.86	0.68	0.913945	1.000000	-
Rv2320c	rocE	27	71.3	72.7	66.8	64.2	79.4	79.6	-0.018	0.008	-0.107	-0.161	0.126	0.129	86.3	77.0	83.9	77.6	85.7	87.7	0.83	0.94	0.80	0.83	0.93	0.91	0.524473	1.000000	-
Rv2321c	rocD2	8	59.2	52.4	51.2	70.8	60.5	55.5	0.021	-0.139	-0.171	0.261	0.049	-0.064	71.0	52.4	81.9	100.0	64.5	63.5	0.83	1.00	0.62	0.71	0.94	0.88	0.082916	0.670997	-
Rv2322c	rocD1	8	64.6	51.2	46.5	61.9	50.4	67.6	0.167	-0.143	-0.270	0.110	-0.164	0.227	86.2	68.2	61.9	82.6	73.3	108.2	0.75	0.75	0.75	0.75	0.69	0.62	0.680524	1.000000	-
Rv2323c	-	20	132.4	150.8	144.0	129.3	133.0	133.7	-0.049	0.132	0.068	-0.083	-0.044	-0.036	172.8	208.0	180.1	172.3	152.0	162.1	0.77	0.72	0.80	0.75	0.88	0.82	0.866244	1.000000	-
Rv2324	-	2	617.1	495.1	648.3	337.5	299.9	323.2	0.440	0.125	0.511	-0.421	-0.589	-0.483	617.1	495.1	648.3	337.5	299.9	323.2	1.00	1.00	1.00	1.00	1.00	1.00	0.275243	1.000000	-
Rv2325c	-	7	83.8	107.5	77.7	79.3	95.7	73.2	-0.039	0.303	-0.141	-0.113	0.143	-0.222	103.5	115.8	90.7	111.1	111.7	102.5	0.81	0.93	0.86	0.71	0.86	0.71	0.848183	1.000000	-
Rv2326c	-	22	126.4	119.0	116.6	135.5	139.8	142.2	-0.038	-0.121	-0.150	0.059	0.102	0.125	151.7	127.7	131.5	146.6	150.1	156.4	0.83	0.93	0.89	0.92	0.93	0.91	0.814155	1.000000	-
Rv2327	-	5	59.5	56.0	78.8	48.3	41.9	52.7	0.076	-0.005	0.454	-0.200	-0.385	-0.085	99.2	70.0	131.3	72.4	69.8	87.8	0.60	0.80	0.60	0.67	0.60	0.60	0.743208	1.000000	-
Rv2328	PE23	12	86.0	76.0	54.7	70.6	81.8	69.1	0.221	0.055	-0.387	-0.047	0.154	-0.074	114.6	101.4	82.0	97.7	103.3	79.0	0.75	0.75	0.67	0.72	0.79	0.88	0.918718	1.000000	-
Rv2329c	narK1	27	92.3	96.7	93.3	97.6	101.3	92.6	-0.049	0.015	-0.034	0.029	0.079	-0.044	108.4	104.4	117.1	109.8	105.2	102.0	0.85	0.93	0.80	0.89	0.96	0.91	0.689672	1.000000	-
Rv2330c	lppP	6	33.3	31.4	32.9	37.3	36.0	52.4	-0.141	-0.212	-0.155	0.002	-0.043	0.444	37.4	34.3	43.9	39.4	36.0	52.4	0.89	0.92	0.75	0.94	1.00	1.00	0.280550	1.000000	-
Rv2331	-	5	130.9	124.9	117.1	124.3	109.4	182.8	-0.007	-0.073	-0.161	-0.079	-0.255	0.459	130.9	124.9	117.1	124.3	109.4	182.8	1.00	1.00	1.00	1.00	1.00	1.00	0.510054	1.000000	-
Rv2331A	-	4	108.2	98.0	92.0	74.6	80.7	87.1	0.251	0.115	0.029	-0.257	-0.150	-0.046	129.9	130.7	105.2	81.4	107.7	116.2	0.83	0.75	0.88	0.92	0.75	0.75	0.869320	1.000000	-
Rv2332	mez	26	147.6	135.7	123.9	129.9	116.1	129.6	0.172	0.055	-0.071	-0.007	-0.162	-0.009	169.3	156.9	161.1	140.7	128.4	137.6	0.87	0.87	0.77	0.92	0.90	0.94	0.552671	1.000000	-
Rv2333c	-	17	248.0	274.0	291.2	241.7	286.9	255.3	-0.100	0.041	0.127	-0.136	0.106	-0.059	248.0	274.0	300.0	246.6	286.9	255.3	1.00	1.00	0.97	0.98	1.00	1.00	0.724383	1.000000	-
Rv2334	cysK1	13	91.2	58.1	113.0	68.3	80.1	73.3	0.168	-0.441	0.462	-0.225	-0.010	-0.130	111.2	75.5	139.9	88.7	90.5	86.6	0.82	0.77	0.81	0.77	0.88	0.85	0.460789	1.000000	-
Rv2335	cysE	5	174.4	73.0	187.4	118.7	142.6	110.5	0.363	-0.838	0.465	-0.173	0.082	-0.272	201.2	81.1	208.3	118.7	178.3	122.8	0.87	0.90	0.90	1.00	0.80	0.90	0.397684	1.000000	-
Rv2336	-	28	25.1	35.2	30.1	36.7	30.8	37.7	-0.319	0.098	-0.099	0.148	-0.071	0.182	43.1	51.9	51.1	45.3	45.4	52.7	0.58	0.68	0.59	0.81	0.68	0.71	0.165075	0.996469	-
Rv2337c	-	6	197.4	251.1	224.4	208.5	200.3	181.6	-0.091	0.249	0.090	-0.014	-0.071	-0.208	236.8	251.1	269.3	208.5	240.3	181.6	0.83	1.00	0.83	1.00	0.83	1.00	0.390786	1.000000	-
Rv2338c	moeW	34	19.1	25.0	24.8	24.6	28.8	26.6	-0.306	0.010	0.000	-0.009	0.179	0.082	34.2	41.5	42.2	39.3	38.4	43.0	0.56	0.60	0.59	0.63	0.75	0.62	0.404010	1.000000	-
Rv2339	mmpL9	79	48.1	56.7	61.7	59.4	62.0	66.1	-0.269	-0.053	0.060	0.008	0.066	0.152	78.7	83.7	106.0	82.3	88.3	92.4	0.61	0.68	0.58	0.72	0.70	0.72	0.183946	1.000000	-
Rv2340c	PE_PGRS39	13	240.4	251.5	234.2	245.0	251.3	240.0	-0.020	0.044	-0.056	0.008	0.043	-0.022	267.8	272.4	243.6	251.5	251.3	260.0	0.90	0.92	0.96	0.97	1.00	0.92	0.837810	1.000000	-
Rv2341	lppQ	3	201.0	171.1	189.6	199.6	124.2	147.8	0.217	-0.009	0.135	0.207	-0.456	-0.214	201.0	205.3	189.6	256.6	149.1	147.8	1.00	0.83	1.00	0.78	0.83	1.00	0.882952	1.000000	-
Rv2342	-	3	195.2	184.8	242.6	195.3	179.9	153.2	0.024	-0.052	0.331	0.025	-0.091	-0.315	195.2	184.8	242.6	195.3	179.9	153.2	1.00	1.00	1.00	1.00	1.00	1.00	0.867986	1.000000	-
Rv2343c	dnaG	20	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2344c	dgt	22	142.1	189.1	147.8	153.5	161.6	169.5	-0.171	0.229	-0.116	-0.063	0.009	0.075	164.6	198.1	175.8	166.1	177.8	169.5	0.86	0.95	0.84	0.92	0.91	1.00	0.259652	1.000000	-
Rv2345	-	28	371.2	373.8	346.5	364.4	332.7	347.4	0.059	0.070	-0.039	0.033	-0.096	-0.035	380.2	373.8	359.3	368.8	338.8	360.3	0.98	1.00	0.96	0.99	0.98	0.96	0.940569	1.000000	-
Rv2346c	esxO	2	240.3	287.4	284.4	235.3	276.0	340.0	-0.202	0.051	0.036	-0.232	-0.006	0.290	240.3	287.4	284.4	235.3	276.0	340.0	1.00	1.00	1.00	1.00	1.00	1.00	0.611521	1.000000	-
Rv2347c	esxP	3	178.8	161.3	148.9	145.0	152.2	153.5	0.186	0.041	-0.071	-0.108	-0.040	-0.028	178.8	161.3	148.9	145.0	152.2	153.5	1.00	1.00	1.00	1.00	1.00	1.00	0.981721	1.000000	-
Rv2348c	-	2	129.2	117.3	132.5	88.5	88.8	131.4	0.166	0.032	0.201	-0.355	-0.350	0.189	129.2	117.3	132.5	88.5	88.8	131.4	1.00	1.00	1.00	1.00	1.00	1.00	0.322086	1.000000	-
Rv2349c	plcC	25	179.4	197.1	152.0	159.0	168.5	191.6	0.038	0.170	-0.194	-0.131	-0.050	0.131	197.8	205.3	165.3	168.0	171.9	191.6	0.91	0.96	0.92	0.95	0.98	1.00	0.450173	1.000000	-
Rv2350c	plcB	21	147.2	150.1	123.5	136.5	156.0	153.0	0.027	0.054	-0.217	-0.079	0.108	0.081	154.6	150.1	129.7	143.3	156.0	153.0	0.95	1.00	0.95	0.95	1.00	1.00	0.435858	1.000000	-
Rv2351c	plcA	23	265.6	265.5	274.1	263.6	260.0	241.5	0.021	0.020	0.066	0.010	-0.009	-0.114	286.3	284.0	280.2	279.8	278.2	264.5	0.93	0.93	0.98	0.94	0.93	0.91	0.982747	1.000000	-
Rv2352c	PPE38	15	357.1	322.5	348.0	372.9	368.3	332.0	0.028	-0.117	-0.009	0.090	0.072	-0.076	357.1	322.5	372.8	372.9	368.3	332.0	1.00	1.00	0.93	1.00	1.00	1.00	0.746268	1.000000	-
Rv2353c	PPE39	22	12.1	12.7	14.2	12.0	13.2	14.2	-0.081	-0.027	0.088	-0.086	0.009	0.086	27.5	28.0	39.1	28.3	27.6	26.0	0.44	0.45	0.36	0.42	0.48	0.55	0.856681	1.000000	-
Rv2354	-	4	186.0	243.0	199.9	255.2	209.0	160.8	-0.164	0.213	-0.063	0.282	-0.000	-0.368	186.0	243.0	199.9	255.2	209.0	160.8	1.00	1.00	1.00	1.00	1.00	1.00	0.804071	1.000000	-
Rv2355	-	21	291.8	280.9	323.7	311.3	284.3	294.4	-0.028	-0.082	0.119	0.063	-0.066	-0.016	367.7	337.1	424.9	377.1	331.7	334.2	0.79	0.83	0.76	0.83	0.86	0.88	0.993573	1.000000	-
Rv2356c	PPE40	26	123.3	107.6	121.0	103.8	99.7	116.4	0.134	-0.055	0.108	-0.105	-0.160	0.053	240.5	215.2	233.1	202.3	199.3	201.7	0.51	0.50	0.52	0.51	0.50	0.58	0.999231	1.000000	-
Rv2357c	glyS	28	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2358	-	4	57.7	70.5	56.9	2.3	2.9	64.1	0.404	0.671	0.385	-2.696	-2.578	0.543	57.7	70.5	56.9	13.9	11.8	64.1	1.00	1.00	1.00	0.17	0.25	1.00	0.000000	0.000000	-
Rv2359	furB	5	83.6	88.7	59.4	1.0	0.0	81.7	0.627	0.707	0.166	-3.268	-3.521	0.595	89.6	88.7	66.0	14.4	0.0	81.7	0.93	1.00	0.90	0.07	0.00	1.00	0.000000	0.000000	-
Rv2360c	-	5	334.0	323.1	380.1	300.8	304.5	282.8	0.057	0.010	0.241	-0.092	-0.075	-0.179	334.0	323.1	380.1	300.8	304.5	282.8	1.00	1.00	1.00	1.00	1.00	1.00	0.966737	1.000000	-
Rv2361c	-	15	0.0	0.0	0.0	0.6	0.0	0.0	-0.031	-0.031	-0.031	0.145	-0.031	-0.031	0.0	0.0	0.0	14.6	0.0	0.0	0.00	0.00	0.00	0.04	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2362c	recO	8	193.2	176.8	183.0	195.1	210.6	164.1	0.045	-0.080	-0.031	0.059	0.166	-0.184	193.2	176.8	183.0	195.1	224.7	175.1	1.00	1.00	1.00	1.00	0.94	0.94	0.666594	1.000000	-
Rv2363	amiA2	17	95.2	149.2	102.2	147.2	145.3	112.9	-0.379	0.242	-0.282	0.224	0.206	-0.145	107.9	149.2	119.8	150.2	159.4	116.3	0.88	1.00	0.85	0.98	0.91	0.97	0.054041	0.501449	-
Rv2364c	era	15	0.0	3.0	0.8	0.9	0.3	1.0	-0.269	0.416	-0.045	-0.021	-0.185	0.002	0.0	11.4	12.6	14.1	9.0	10.3	0.00	0.27	0.07	0.07	0.03	0.10	0.029410	0.319870	-
Rv2365c	-	2	295.9	315.1	239.1	271.9	141.6	209.7	0.264	0.353	-0.037	0.144	-0.773	-0.223	295.9	315.1	239.1	271.9	141.6	209.7	1.00	1.00	1.00	1.00	1.00	1.00	0.000005	0.000173	-
Rv2366c	-	19	120.5	132.7	103.2	120.6	119.6	108.2	0.036	0.169	-0.179	0.037	0.025	-0.113	137.4	140.0	112.0	132.2	133.7	120.9	0.88	0.95	0.92	0.91	0.89	0.89	0.951312	1.000000	-
Rv2367c	-	7	2.6	8.0	3.6	5.5	7.1	5.3	-0.438	0.326	-0.266	0.016	0.226	-0.005	18.5	18.6	16.8	19.1	16.6	14.9	0.14	0.43	0.21	0.29	0.43	0.36	0.909604	1.000000	-
Rv2368c	phoH1	17	155.1	148.1	159.9	136.0	146.9	164.7	0.030	-0.034	0.073	-0.153	-0.046	0.114	164.8	148.1	164.7	136.0	146.9	174.9	0.94	1.00	0.97	1.00	1.00	0.94	0.340780	1.000000	-
Rv2369c	-	3	137.0	147.8	147.2	186.6	120.3	187.2	-0.166	-0.061	-0.066	0.266	-0.347	0.270	137.0	147.8	147.2	186.6	120.3	187.2	1.00	1.00	1.00	1.00	1.00	1.00	0.846038	1.000000	-
Rv2370c	-	17	150.6	145.3	139.5	147.2	155.1	160.7	0.008	-0.042	-0.099	-0.023	0.050	0.098	163.4	159.4	158.1	156.4	164.8	160.7	0.92	0.91	0.88	0.94	0.94	1.00	0.836834	1.000000	-
Rv2371	PE_PGRS40	1	18.7	0.0	6.3	0.0	26.2	0.0	0.808	-1.437	-0.260	-1.437	1.205	-1.437	28.1	0.0	12.6	0.0	26.2	0.0	0.67	0.00	0.50	0.00	1.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2372c	-	4	421.9	288.7	340.8	351.2	303.1	313.8	0.322	-0.218	0.018	0.060	-0.149	-0.100	460.3	288.7	340.8	351.2	303.1	313.8	0.92	1.00	1.00	1.00	1.00	1.00	0.972905	1.000000	-
Rv2373c	dnaJ2	8	11.3	16.6	11.0	6.4	3.5	15.2	0.057	0.462	0.029	-0.454	-0.881	0.366	24.6	33.1	35.1	19.3	14.0	24.3	0.46	0.50	0.31	0.33	0.25	0.62	0.062490	0.551630	-
Rv2374c	hrcA	21	49.8	50.1	49.1	47.9	31.8	42.4	0.127	0.134	0.109	0.075	-0.447	-0.082	65.4	54.0	66.6	56.9	39.3	45.7	0.76	0.93	0.74	0.84	0.81	0.93	0.107819	0.775134	-
Rv2375	-	8	135.3	157.3	142.1	139.3	170.3	169.6	-0.165	0.045	-0.097	-0.125	0.156	0.150	147.6	157.3	151.6	139.3	170.3	169.6	0.92	1.00	0.94	1.00	1.00	1.00	0.778570	1.000000	-
Rv2376c	cfp2	2	681.4	679.3	794.2	579.9	494.5	572.3	0.104	0.100	0.324	-0.127	-0.354	-0.146	681.4	679.3	794.2	579.9	494.5	572.3	1.00	1.00	1.00	1.00	1.00	1.00	0.003762	0.062447	-
Rv2377c	mbtH	2	322.9	213.5	270.1	244.1	176.0	180.2	0.454	-0.132	0.200	0.057	-0.404	-0.370	322.9	213.5	270.1	244.1	351.9	360.5	1.00	1.00	1.00	1.00	0.50	0.50	0.239674	1.000000	-
Rv2378c	mbtG	8	248.5	196.1	206.7	210.5	213.0	223.2	0.196	-0.138	-0.064	-0.039	-0.022	0.044	331.4	241.4	300.7	210.5	227.1	238.1	0.75	0.81	0.69	1.00	0.94	0.94	0.158784	0.976193	-
Rv2379c	mbtF	59	153.1	139.5	147.5	137.1	148.0	126.2	0.106	-0.024	0.054	-0.048	0.059	-0.163	193.5	177.0	179.5	156.6	166.3	146.0	0.79	0.79	0.82	0.88	0.89	0.86	0.346437	1.000000	-
Rv2380c	mbtE	72	134.9	128.9	133.8	132.8	121.0	126.4	0.056	-0.008	0.044	0.034	-0.096	-0.035	155.9	142.8	161.9	153.4	133.0	135.8	0.87	0.90	0.83	0.87	0.91	0.93	0.683060	1.000000	-
Rv2381c	mbtD	40	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2382c	mbtC	16	149.2	156.3	140.1	174.4	161.6	174.3	-0.092	-0.027	-0.180	0.127	0.020	0.126	152.4	166.7	149.4	178.1	161.6	174.3	0.98	0.94	0.94	0.98	1.00	1.00	0.354454	1.000000	-
Rv2383c	mbtB	47	168.5	189.8	177.3	194.3	182.6	176.7	-0.104	0.063	-0.033	0.095	0.008	-0.038	198.0	207.5	193.8	207.5	197.3	190.9	0.85	0.91	0.91	0.94	0.93	0.93	0.745405	1.000000	-
Rv2384	mbtA	20	188.3	214.6	169.8	196.6	196.6	190.6	-0.033	0.151	-0.178	0.028	0.028	-0.016	191.4	214.6	183.5	206.9	196.6	190.6	0.98	1.00	0.93	0.95	1.00	1.00	0.340245	1.000000	-
Rv2385	mbtJ	17	104.0	132.4	120.2	153.9	157.3	130.7	-0.342	-0.007	-0.141	0.202	0.233	-0.025	110.5	140.7	123.9	167.0	167.1	138.9	0.94	0.94	0.97	0.92	0.94	0.94	0.225609	1.000000	-
Rv2386c	mbtI	16	33.5	46.1	34.6	44.6	53.3	58.7	-0.382	0.029	-0.340	-0.015	0.218	0.345	51.8	70.3	73.8	62.9	65.6	72.2	0.65	0.66	0.47	0.71	0.81	0.81	0.214388	1.000000	-
Rv2387	-	23	190.3	192.3	173.9	194.6	191.9	186.0	0.016	0.030	-0.111	0.047	0.028	-0.016	196.0	196.6	181.8	197.5	191.9	186.0	0.97	0.98	0.96	0.99	1.00	1.00	0.935973	1.000000	-
Rv2388c	hemN	19	210.1	222.1	215.3	228.5	203.4	244.0	-0.068	0.010	-0.034	0.050	-0.114	0.142	254.8	272.3	272.7	250.5	227.3	272.7	0.82	0.82	0.79	0.91	0.89	0.89	0.916772	1.000000	-
Rv2389c	rpfD	7	118.4	120.4	124.3	128.2	136.1	142.4	-0.111	-0.088	-0.043	-0.001	0.082	0.145	138.1	120.4	145.1	149.5	136.1	166.1	0.86	1.00	0.86	0.86	1.00	0.86	0.643049	1.000000	-
Rv2390c	-	5	68.2	51.0	54.4	47.0	72.0	75.0	0.144	-0.242	-0.159	-0.351	0.217	0.271	127.9	72.9	77.7	78.3	90.0	75.0	0.53	0.70	0.70	0.60	0.80	1.00	0.491340	1.000000	-
Rv2391	nirA	19	58.6	49.1	65.8	52.0	58.6	28.9	0.154	-0.080	0.309	-0.003	0.152	-0.753	72.6	58.3	83.4	61.8	69.5	42.3	0.81	0.84	0.79	0.84	0.84	0.68	0.196157	1.000000	-
Rv2392	cysH	12	41.1	15.7	40.7	41.5	36.2	13.0	0.341	-0.816	0.329	0.355	0.181	-1.011	67.2	26.8	61.0	62.3	51.2	19.6	0.61	0.58	0.67	0.67	0.71	0.67	0.004367	0.069975	-
Rv2393	-	6	57.2	89.1	63.6	74.0	50.3	58.7	-0.181	0.417	-0.039	0.164	-0.349	-0.146	85.7	133.6	76.3	74.0	54.9	58.7	0.67	0.67	0.83	1.00	0.92	1.00	0.037095	0.384439	-
Rv2394	ggtB	30	147.4	136.9	158.5	136.3	149.6	140.8	0.024	-0.079	0.125	-0.085	0.044	-0.040	158.0	149.4	179.4	155.3	157.4	145.7	0.93	0.92	0.88	0.88	0.95	0.97	0.791996	1.000000	-
Rv2395	-	33	178.2	152.0	179.2	149.4	160.5	182.2	0.092	-0.131	0.100	-0.155	-0.055	0.123	212.6	159.3	200.5	155.7	170.8	185.0	0.84	0.95	0.89	0.96	0.94	0.98	0.052232	0.488070	-
Rv2396	PE_PGRS41	12	237.1	231.3	241.2	206.4	220.5	201.3	0.087	0.052	0.111	-0.109	-0.016	-0.144	328.2	396.4	304.7	256.2	294.0	241.6	0.72	0.58	0.79	0.81	0.75	0.83	0.652261	1.000000	-
Rv2397c	cysA1	12	75.5	49.1	88.6	121.3	94.7	36.7	-0.038	-0.612	0.179	0.612	0.271	-0.987	79.9	53.5	111.9	121.3	108.2	44.1	0.94	0.92	0.79	1.00	0.88	0.83	0.000036	0.000999	-
Rv2398c	cysW	16	40.9	26.9	58.8	59.6	46.3	24.6	-0.062	-0.585	0.415	0.434	0.100	-0.691	67.6	34.4	78.4	98.7	70.6	39.4	0.60	0.78	0.75	0.60	0.66	0.62	0.000650	0.013649	-
Rv2399c	cysT	10	65.0	40.7	55.6	81.5	82.5	41.5	0.083	-0.535	-0.125	0.387	0.404	-0.509	102.7	62.5	92.7	122.3	103.1	51.9	0.63	0.65	0.60	0.67	0.80	0.80	0.294198	1.000000	-
Rv2400c	subI	17	68.0	50.2	66.8	105.8	95.4	39.9	-0.058	-0.461	-0.082	0.543	0.402	-0.761	86.7	63.2	81.2	122.6	111.9	52.1	0.78	0.79	0.82	0.86	0.85	0.76	0.003149	0.054387	-
Rv2401	-	3	171.1	156.4	140.5	196.1	205.9	182.8	-0.035	-0.161	-0.311	0.156	0.225	0.057	171.1	156.4	140.5	294.1	247.1	182.8	1.00	1.00	1.00	0.67	0.83	1.00	0.227104	1.000000	-
Rv2401A	-	1	5.5	0.0	0.0	0.0	9.0	0.0	0.498	-0.568	-0.568	-0.568	0.918	-0.568	16.4	0.0	0.0	0.0	18.0	0.0	0.33	0.00	0.00	0.00	0.50	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2402	-	26	177.5	170.5	182.1	190.8	185.4	168.3	-0.012	-0.069	0.023	0.089	0.049	-0.087	182.2	170.5	185.6	198.4	185.4	175.0	0.97	1.00	0.98	0.96	1.00	0.96	0.666694	1.000000	-
Rv2403c	lppR	7	20.5	37.1	33.4	38.1	35.5	30.5	-0.557	0.167	0.034	0.201	0.109	-0.080	39.1	51.9	52.0	47.1	49.6	35.6	0.52	0.71	0.64	0.81	0.71	0.86	0.608360	1.000000	-
Rv2404c	lepA	27	235.8	179.1	208.5	162.9	144.4	192.4	0.326	-0.062	0.152	-0.195	-0.363	0.038	261.7	189.6	216.5	175.9	159.2	207.8	0.90	0.94	0.96	0.93	0.91	0.93	0.463617	1.000000	-
Rv2405	-	8	177.3	183.3	138.2	155.4	139.8	123.7	0.207	0.253	-0.141	0.022	-0.125	-0.295	177.3	183.3	138.2	155.4	139.8	123.7	1.00	1.00	1.00	1.00	1.00	1.00	0.626321	1.000000	-
Rv2406c	-	7	189.6	192.3	183.9	198.7	175.4	162.6	0.044	0.064	0.001	0.110	-0.066	-0.171	189.6	192.3	198.1	198.7	175.4	162.6	1.00	1.00	0.93	1.00	1.00	1.00	0.929096	1.000000	-
Rv2407	-	9	212.4	181.5	189.7	187.4	203.8	185.4	0.132	-0.089	-0.027	-0.044	0.074	-0.059	318.5	233.4	262.7	266.4	282.1	208.6	0.67	0.78	0.72	0.70	0.72	0.89	0.964867	1.000000	-
Rv2408	PE24	12	103.3	125.1	95.6	115.0	121.6	115.0	-0.119	0.146	-0.225	0.029	0.106	0.029	103.3	125.1	99.7	118.3	121.6	125.4	1.00	1.00	0.96	0.97	1.00	0.92	0.244793	1.000000	-
Rv2409c	-	18	105.6	110.3	106.9	144.7	116.1	123.1	-0.151	-0.090	-0.134	0.286	-0.021	0.061	105.6	120.4	106.9	144.7	119.4	126.6	1.00	0.92	1.00	1.00	0.97	0.97	0.019490	0.231441	-
Rv2410c	-	9	121.6	123.2	105.7	161.3	122.5	105.8	-0.020	-0.002	-0.214	0.374	-0.010	-0.212	172.8	158.4	135.8	197.9	157.5	136.1	0.70	0.78	0.78	0.81	0.78	0.78	0.971074	1.000000	-
Rv2411c	-	22	187.1	170.0	161.0	192.4	213.1	174.3	0.031	-0.103	-0.179	0.071	0.215	-0.068	202.4	170.0	177.1	192.4	218.1	174.3	0.92	1.00	0.91	1.00	0.98	1.00	0.081003	0.662300	-
Rv2412	rpsT	1	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2413c	-	13	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2414c	-	9	115.2	78.8	107.6	133.2	77.7	89.1	0.191	-0.329	0.097	0.393	-0.348	-0.162	141.4	88.7	113.9	149.9	82.2	100.2	0.81	0.89	0.94	0.89	0.94	0.89	0.543206	1.000000	-
Rv2415c	-	14	111.2	105.2	127.2	129.1	122.9	95.7	-0.050	-0.125	0.137	0.158	0.089	-0.256	119.7	113.3	154.9	139.1	132.3	103.0	0.93	0.93	0.82	0.93	0.93	0.93	0.783883	1.000000	-
Rv2416c	eis	26	94.4	86.7	105.5	99.2	88.8	80.3	0.028	-0.088	0.181	0.096	-0.056	-0.193	129.2	140.9	144.4	133.4	124.8	116.0	0.73	0.62	0.73	0.74	0.71	0.69	0.763254	1.000000	-
Rv2417c	-	10	144.7	120.1	145.3	155.3	112.7	123.0	0.112	-0.147	0.118	0.211	-0.235	-0.114	149.7	120.1	171.0	155.3	150.3	123.0	0.97	1.00	0.85	1.00	0.75	1.00	0.032411	0.346702	-
Rv2418c	-	20	8.7	24.9	8.5	26.4	25.1	12.3	-0.726	0.399	-0.751	0.473	0.411	-0.387	32.6	43.3	26.0	42.9	41.9	29.0	0.27	0.57	0.33	0.62	0.60	0.42	0.001527	0.028745	-
Rv2419c	-	7	89.7	110.5	121.1	163.7	136.3	121.2	-0.443	-0.156	-0.030	0.390	0.134	-0.029	104.7	154.8	130.4	191.0	159.1	141.4	0.86	0.71	0.93	0.86	0.86	0.86	0.429286	1.000000	-
Rv2420c	-	4	14.0	16.6	14.8	20.0	17.6	21.2	-0.234	-0.051	-0.179	0.160	0.015	0.230	28.1	22.1	29.5	34.3	35.2	24.3	0.50	0.75	0.50	0.58	0.50	0.88	0.662259	1.000000	-
Rv2421c	nadD	12	0.0	0.0	0.0	0.0	0.4	0.0	-0.018	-0.018	-0.018	-0.018	0.086	-0.018	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.04	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2422	-	4	79.6	130.0	112.5	105.0	96.7	131.6	-0.434	0.241	0.041	-0.055	-0.167	0.258	79.6	130.0	112.5	105.0	96.7	131.6	1.00	1.00	1.00	1.00	1.00	1.00	0.450182	1.000000	-
Rv2423	-	17	229.9	248.1	218.6	212.7	223.4	243.1	0.004	0.112	-0.068	-0.106	-0.037	0.083	234.5	263.6	239.7	226.0	223.4	258.3	0.98	0.94	0.91	0.94	1.00	0.94	0.697505	1.000000	-
Rv2424c	-	7	209.5	174.4	203.1	212.0	185.2	182.4	0.105	-0.153	0.061	0.122	-0.068	-0.090	258.8	203.5	258.5	261.9	216.1	212.8	0.81	0.86	0.79	0.81	0.86	0.86	0.999824	1.000000	-
Rv2425c	-	16	152.6	137.2	128.8	140.3	142.1	122.2	0.148	0.000	-0.088	0.031	0.049	-0.161	159.2	137.2	137.4	153.0	146.7	126.2	0.96	1.00	0.94	0.92	0.97	0.97	0.843126	1.000000	-
Rv2426c	-	10	208.3	216.7	182.0	162.8	151.1	158.3	0.206	0.262	0.017	-0.140	-0.244	-0.179	231.4	240.8	202.2	187.9	167.9	158.3	0.90	0.90	0.90	0.87	0.90	1.00	0.686033	1.000000	-
Rv2427c	proA	15	266.1	239.8	238.5	220.9	165.3	201.9	0.256	0.108	0.101	-0.007	-0.415	-0.134	323.7	266.5	265.0	276.1	198.3	242.3	0.82	0.90	0.90	0.80	0.83	0.83	0.885001	1.000000	-
Rv2428	ahpC	8	52.3	80.7	47.9	64.8	49.5	50.4	-0.129	0.453	-0.242	0.157	-0.200	-0.175	89.6	117.4	76.7	81.8	60.9	67.3	0.58	0.69	0.62	0.79	0.81	0.75	0.795103	1.000000	-
Rv2429	ahpD	10	81.8	111.9	62.5	96.1	85.3	109.5	-0.148	0.281	-0.512	0.072	-0.091	0.252	94.4	111.9	69.4	99.4	85.3	109.5	0.87	1.00	0.90	0.97	1.00	1.00	0.075058	0.623916	-
Rv2430c	PPE41	8	124.4	116.1	101.1	176.9	155.6	153.8	-0.143	-0.240	-0.431	0.347	0.168	0.152	135.8	116.1	101.1	176.9	155.6	153.8	0.92	1.00	1.00	1.00	1.00	1.00	0.161706	0.987163	-
Rv2431c	PE25	5	91.4	88.8	94.3	100.1	89.8	84.8	-0.003	-0.041	0.041	0.122	-0.026	-0.104	91.4	88.8	94.3	100.1	89.8	84.8	1.00	1.00	1.00	1.00	1.00	1.00	0.995970	1.000000	-
Rv2432c	-	7	93.5	90.2	132.1	130.1	139.7	119.0	-0.315	-0.363	0.164	0.142	0.241	0.018	98.1	126.3	154.2	130.1	150.5	138.8	0.95	0.71	0.86	1.00	0.93	0.86	0.130868	0.870272	-
Rv2433c	-	6	184.2	132.3	147.9	137.2	124.9	129.2	0.358	-0.104	0.051	-0.054	-0.184	-0.138	221.0	176.4	177.5	176.4	149.9	140.9	0.83	0.75	0.83	0.78	0.83	0.92	0.989344	1.000000	-
Rv2434c	-	23	47.9	56.2	53.7	59.2	45.3	56.5	-0.135	0.074	0.014	0.143	-0.209	0.081	75.1	86.1	77.1	99.6	71.8	74.2	0.64	0.65	0.70	0.59	0.63	0.76	0.481983	1.000000	-
Rv2435c	-	50	39.9	47.3	53.3	54.1	49.8	55.2	-0.292	-0.072	0.085	0.106	-0.003	0.133	63.0	62.2	74.0	76.6	70.2	73.7	0.63	0.76	0.72	0.71	0.71	0.75	0.382136	1.000000	-
Rv2436	rbsK	11	129.6	126.1	108.6	107.4	118.4	98.1	0.169	0.131	-0.075	-0.090	0.044	-0.215	164.6	173.3	170.7	197.0	153.2	119.9	0.79	0.73	0.64	0.55	0.77	0.82	0.469634	1.000000	-
Rv2437	-	9	41.9	42.6	52.1	36.9	42.1	39.7	-0.021	0.002	0.264	-0.182	-0.014	-0.090	56.5	51.1	72.2	45.3	58.3	44.6	0.74	0.83	0.72	0.81	0.72	0.89	0.798918	1.000000	-
Rv2438c	nadE	35	0.0	0.0	0.0	0.0	0.2	0.0	-0.010	-0.010	-0.010	-0.010	0.049	-0.010	0.0	0.0	0.0	0.0	14.5	0.0	0.00	0.00	0.00	0.00	0.01	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2438A	-	5	26.7	62.8	50.1	55.6	27.4	36.0	-0.602	0.495	0.197	0.333	-0.568	-0.231	66.7	156.9	125.3	138.9	68.6	89.9	0.40	0.40	0.40	0.40	0.40	0.40	0.111120	0.784724	-
Rv2439c	proB	11	1.6	2.3	0.6	1.7	0.0	7.4	-0.145	0.009	-0.379	-0.121	-0.535	0.775	17.1	10.1	12.6	13.7	0.0	18.1	0.09	0.23	0.05	0.12	0.00	0.41	0.008548	0.123574	-
Rv2440c	obgE	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2441c	rpmA	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2442c	rplU	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2443	dctA	19	206.8	215.1	191.1	213.7	211.9	219.0	-0.019	0.037	-0.130	0.027	0.015	0.062	214.3	227.0	191.1	213.7	211.9	219.0	0.96	0.95	1.00	1.00	1.00	1.00	0.477518	1.000000	-
Rv2444c	rne	28	2.0	4.7	1.9	5.7	4.5	2.3	-0.280	0.189	-0.302	0.331	0.156	-0.229	24.1	29.3	21.3	43.6	25.1	21.1	0.08	0.16	0.09	0.13	0.18	0.11	1.000000	1.000000	-
Rv2445c	ndk	3	2.6	3.4	14.5	1.6	2.4	1.6	-0.302	-0.155	1.061	-0.494	-0.335	-0.511	23.3	10.2	43.5	14.8	14.5	9.4	0.11	0.33	0.33	0.11	0.17	0.17	0.076416	0.632052	-
Rv2446c	-	6	118.2	116.3	103.0	141.7	145.8	120.5	-0.069	-0.092	-0.258	0.183	0.222	-0.043	118.2	116.3	112.4	141.7	145.8	120.5	1.00	1.00	0.92	1.00	1.00	1.00	0.752273	1.000000	-
Rv2447c	folC	13	0.0	0.4	0.5	0.0	0.0	0.0	-0.041	0.066	0.092	-0.041	-0.041	-0.041	0.0	10.0	12.6	0.0	0.0	0.0	0.00	0.04	0.04	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2448c	valS	24	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2449c	-	23	242.5	242.5	239.1	238.7	218.3	237.7	0.036	0.036	0.016	0.013	-0.113	0.007	246.0	253.5	249.9	249.5	228.2	237.7	0.99	0.96	0.96	0.96	0.96	1.00	0.872526	1.000000	-
Rv2450c	rpfE	7	141.5	119.6	151.1	117.5	117.3	136.3	0.112	-0.122	0.204	-0.146	-0.148	0.060	198.2	167.4	192.4	164.5	149.3	159.1	0.71	0.71	0.79	0.71	0.79	0.86	0.998683	1.000000	-
Rv2451	-	8	76.3	105.2	85.5	110.3	116.8	97.2	-0.349	0.089	-0.194	0.155	0.234	-0.019	114.4	153.0	105.3	126.0	133.5	111.1	0.67	0.69	0.81	0.88	0.88	0.88	0.687518	1.000000	-
Rv2452c	-	7	75.7	73.4	79.5	63.2	73.5	57.3	0.097	0.056	0.165	-0.145	0.057	-0.277	132.4	102.7	139.2	88.5	102.8	72.9	0.57	0.71	0.57	0.71	0.71	0.79	0.841654	1.000000	-
Rv2453c	mobA	5	301.5	336.1	308.4	293.4	307.4	281.9	-0.015	0.139	0.017	-0.054	0.012	-0.111	301.5	336.1	308.4	293.4	307.4	281.9	1.00	1.00	1.00	1.00	1.00	1.00	0.992071	1.000000	-
Rv2454c	-	15	9.1	23.0	4.4	37.8	67.4	16.3	-1.153	-0.160	-1.738	0.450	1.207	-0.554	25.6	38.4	22.0	50.1	80.8	28.8	0.36	0.60	0.20	0.76	0.83	0.57	0.000000	0.000000	-
Rv2455c	-	37	11.7	17.0	6.4	39.3	60.1	13.9	-0.830	-0.436	-1.390	0.575	1.131	-0.651	25.0	25.7	21.4	48.5	67.4	22.9	0.47	0.66	0.30	0.81	0.89	0.61	0.000000	0.000000	-
Rv2456c	-	20	240.2	248.7	215.3	242.2	238.5	198.2	0.058	0.107	-0.096	0.070	0.048	-0.213	257.4	268.8	239.3	254.9	251.0	220.3	0.93	0.93	0.90	0.95	0.95	0.90	0.983567	1.000000	-
Rv2457c	clpX	17	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2458	mmuM	16	411.3	429.6	424.8	409.7	400.2	418.9	-0.015	0.047	0.031	-0.021	-0.054	0.011	411.3	458.2	453.2	437.0	426.8	446.8	1.00	0.94	0.94	0.94	0.94	0.94	0.606687	1.000000	-
Rv2459	-	20	175.6	190.3	181.5	152.5	171.4	206.3	-0.031	0.081	0.015	-0.229	-0.066	0.195	188.2	200.3	201.6	160.6	185.3	217.1	0.93	0.95	0.90	0.95	0.93	0.95	0.878621	1.000000	-
Rv2460c	clpP2	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2461c	clpP	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2462c	tig	18	211.2	196.4	195.4	232.1	228.3	214.9	-0.012	-0.115	-0.122	0.121	0.098	0.012	211.2	202.0	206.9	245.7	234.9	214.9	1.00	0.97	0.94	0.94	0.97	1.00	0.600493	1.000000	-
Rv2463	lipP	17	96.0	99.3	104.3	90.2	99.3	113.7	-0.062	-0.016	0.051	-0.148	-0.015	0.170	106.4	105.5	110.8	102.2	112.6	120.8	0.90	0.94	0.94	0.88	0.88	0.94	0.940698	1.000000	-
Rv2464c	-	10	221.6	191.8	196.2	192.5	237.5	249.9	0.043	-0.160	-0.128	-0.155	0.141	0.213	246.2	201.9	196.2	199.1	237.5	249.9	0.90	0.95	1.00	0.97	1.00	1.00	0.606615	1.000000	-
Rv2465c	-	6	0.0	0.8	0.0	0.0	0.0	0.0	-0.040	0.183	-0.040	-0.040	-0.040	-0.040	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.08	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2466c	-	9	70.0	80.1	64.9	82.7	54.3	80.7	-0.040	0.142	-0.143	0.186	-0.380	0.153	85.9	90.1	73.0	85.9	65.1	90.8	0.81	0.89	0.89	0.96	0.83	0.89	0.852275	1.000000	-
Rv2467	pepN	35	161.3	174.2	162.5	173.3	183.3	147.4	-0.049	0.059	-0.038	0.052	0.131	-0.174	167.6	179.4	167.3	180.1	186.0	147.4	0.96	0.97	0.97	0.96	0.99	1.00	0.513322	1.000000	-
Rv2468c	-	5	196.4	162.0	234.2	174.5	185.1	199.8	0.032	-0.238	0.280	-0.134	-0.051	0.056	196.4	180.0	234.2	174.5	185.1	199.8	1.00	0.90	1.00	1.00	1.00	1.00	0.856131	1.000000	-
Rv2469c	-	8	244.1	186.3	214.5	163.2	157.4	174.3	0.354	-0.028	0.171	-0.213	-0.264	-0.121	244.1	186.3	214.5	170.3	157.4	174.3	1.00	1.00	1.00	0.96	1.00	1.00	0.726444	1.000000	-
Rv2470	glbO	8	75.3	36.2	100.1	161.7	174.4	39.9	-0.358	-1.320	0.030	0.695	0.801	-1.196	78.6	36.2	106.8	161.7	174.4	39.9	0.96	1.00	0.94	1.00	1.00	1.00	0.000000	0.000000	-
Rv2471	aglA	16	147.3	155.3	154.0	168.3	159.7	176.3	-0.117	-0.043	-0.055	0.069	-0.004	0.135	164.4	171.3	170.0	192.4	170.4	188.1	0.90	0.91	0.91	0.88	0.94	0.94	0.974083	1.000000	-
Rv2472	-	7	56.3	64.2	46.4	37.6	42.8	52.5	0.157	0.332	-0.097	-0.367	-0.201	0.064	69.5	74.9	64.9	52.7	49.9	66.8	0.81	0.86	0.71	0.71	0.86	0.79	0.888418	1.000000	-
Rv2473	-	15	168.9	186.7	166.2	167.4	168.7	149.9	0.008	0.149	-0.015	-0.005	0.006	-0.159	194.9	215.5	191.8	193.1	187.4	173.0	0.87	0.87	0.87	0.87	0.90	0.87	0.995860	1.000000	-
Rv2474c	-	13	69.1	75.3	79.9	90.6	71.0	65.0	-0.114	0.003	0.083	0.255	-0.077	-0.195	99.8	93.3	109.3	117.8	87.9	65.0	0.69	0.81	0.73	0.77	0.81	1.00	0.043764	0.436802	-
Rv2475c	-	8	19.7	20.5	18.3	20.1	29.7	27.7	-0.162	-0.115	-0.245	-0.143	0.326	0.240	29.6	29.9	26.7	34.4	43.2	31.6	0.67	0.69	0.69	0.58	0.69	0.88	0.484206	1.000000	-
Rv2476c	gdh	56	19.0	45.1	14.8	43.5	61.0	34.3	-0.781	0.280	-1.062	0.234	0.676	-0.072	39.0	53.8	39.4	59.5	73.4	43.1	0.49	0.84	0.38	0.73	0.83	0.79	0.000000	0.000000	-
Rv2477c	-	23	0.7	2.4	0.3	2.3	1.9	2.9	-0.237	0.136	-0.358	0.104	0.035	0.231	16.9	12.4	12.6	14.2	12.6	12.3	0.04	0.20	0.02	0.16	0.15	0.24	0.047241	0.458493	-
Rv2478c	-	5	388.9	346.1	336.0	330.1	304.7	346.8	0.182	0.017	-0.025	-0.051	-0.165	0.020	388.9	346.1	336.0	330.1	304.7	346.8	1.00	1.00	1.00	1.00	1.00	1.00	0.992914	1.000000	-
Rv2479c	-	24	261.9	276.6	299.1	291.6	263.8	288.1	-0.095	-0.018	0.093	0.057	-0.085	0.039	325.2	316.1	368.2	355.8	316.5	321.6	0.81	0.88	0.81	0.82	0.83	0.90	0.990003	1.000000	-
Rv2480c	-	4	199.3	231.8	243.3	247.7	224.1	177.5	-0.143	0.070	0.138	0.164	0.022	-0.306	199.3	231.8	243.3	247.7	224.1	177.5	1.00	1.00	1.00	1.00	1.00	1.00	0.930955	1.000000	-
Rv2481c	-	2	138.1	100.3	146.8	123.7	136.7	83.4	0.178	-0.265	0.263	0.025	0.163	-0.517	138.1	100.3	146.8	123.7	136.7	83.4	1.00	1.00	1.00	1.00	1.00	1.00	0.395738	1.000000	-
Rv2482c	plsB2	38	120.8	104.2	118.9	120.5	107.3	104.4	0.096	-0.108	0.074	0.093	-0.067	-0.105	151.4	118.2	139.0	157.9	127.5	115.0	0.80	0.88	0.86	0.76	0.84	0.91	0.210680	1.000000	-
Rv2483c	plsC	23	41.0	48.0	53.7	30.8	55.0	44.3	-0.135	0.071	0.219	-0.495	0.251	-0.035	54.4	52.6	70.6	39.4	58.9	48.5	0.75	0.91	0.76	0.78	0.93	0.91	0.007129	0.105746	-
Rv2484c	-	20	87.7	103.3	90.5	109.7	106.9	105.8	-0.189	0.036	-0.146	0.119	0.082	0.069	107.4	111.7	100.5	119.7	118.7	105.8	0.82	0.93	0.90	0.92	0.90	1.00	0.242133	1.000000	-
Rv2485c	lipQ	19	194.5	204.8	228.4	201.7	212.3	201.4	-0.089	-0.016	0.138	-0.038	0.034	-0.040	201.6	204.8	241.1	205.3	212.3	201.4	0.96	1.00	0.95	0.98	1.00	1.00	0.737642	1.000000	-
Rv2486	echA14	9	460.1	508.1	510.4	506.4	469.6	449.8	-0.073	0.069	0.076	0.064	-0.043	-0.105	460.1	508.1	510.4	525.9	469.6	449.8	1.00	1.00	1.00	0.96	1.00	1.00	0.910591	1.000000	-
Rv2487c	PE_PGRS42	21	131.5	130.0	140.1	144.8	124.8	111.0	0.012	-0.004	0.100	0.146	-0.060	-0.223	156.3	151.6	154.8	168.9	163.9	137.1	0.84	0.86	0.90	0.86	0.76	0.81	0.730744	1.000000	-
Rv2488c	-	38	231.2	201.1	218.2	210.5	194.6	199.0	0.141	-0.055	0.060	0.010	-0.101	-0.070	263.5	218.4	247.6	237.6	224.1	229.2	0.88	0.92	0.88	0.89	0.87	0.87	0.986053	1.000000	-
Rv2489c	-	4	162.8	142.5	116.7	138.8	155.4	193.0	0.100	-0.086	-0.363	-0.123	0.035	0.339	162.8	142.5	133.4	138.8	155.4	193.0	1.00	1.00	0.88	1.00	1.00	1.00	0.935840	1.000000	-
Rv2490c	PE_PGRS43	45	193.5	164.8	189.4	171.7	153.3	138.5	0.194	-0.031	0.164	0.026	-0.133	-0.274	241.9	192.6	227.3	216.7	179.1	166.3	0.80	0.86	0.83	0.79	0.86	0.83	0.726901	1.000000	-
Rv2491	-	14	53.6	42.7	30.4	46.9	30.2	29.9	0.416	0.119	-0.314	0.239	-0.319	-0.333	97.9	70.3	56.7	67.9	56.4	44.0	0.55	0.61	0.54	0.69	0.54	0.68	0.261075	1.000000	-
Rv2492	-	26	22.2	29.5	28.9	35.2	29.5	28.9	-0.322	0.020	-0.008	0.242	0.018	-0.006	44.4	49.5	53.6	62.5	47.9	55.7	0.50	0.60	0.54	0.56	0.62	0.52	0.848890	1.000000	-
Rv2493	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2494	-	5	136.2	152.5	212.6	186.4	170.2	162.5	-0.310	-0.152	0.314	0.128	0.001	-0.064	170.3	190.6	212.6	186.4	189.1	203.1	0.80	0.80	1.00	1.00	0.90	0.80	0.492305	1.000000	-
Rv2495c	pdhC	14	74.7	52.2	65.9	78.2	51.3	45.0	0.267	-0.211	0.099	0.330	-0.234	-0.406	87.2	77.0	83.9	88.8	65.3	57.2	0.86	0.68	0.79	0.88	0.79	0.79	0.324129	1.000000	-
Rv2496c	pdhB	22	34.0	34.6	31.5	37.7	41.6	27.9	-0.022	0.003	-0.114	0.109	0.237	-0.266	62.3	54.4	57.8	69.0	52.3	37.2	0.55	0.64	0.55	0.55	0.80	0.75	0.050018	0.472918	-
Rv2497c	pdhA	22	87.4	81.7	76.4	95.0	84.0	71.0	0.077	-0.014	-0.106	0.192	0.023	-0.204	110.9	105.8	98.8	112.0	102.7	89.3	0.79	0.77	0.77	0.85	0.82	0.80	0.981130	1.000000	-
Rv2498c	citE	9	126.9	129.6	163.7	144.6	132.6	95.9	-0.057	-0.027	0.298	0.124	0.004	-0.444	149.0	137.3	196.4	150.1	132.6	95.9	0.85	0.94	0.83	0.96	1.00	1.00	0.282826	1.000000	-
Rv2499c	-	5	19.9	36.8	33.1	44.9	38.8	61.9	-0.830	-0.083	-0.213	0.174	-0.014	0.597	33.1	45.9	55.2	56.1	38.8	88.4	0.60	0.80	0.60	0.80	1.00	0.70	0.006037	0.092638	-
Rv2500c	fadE19	23	71.5	53.9	50.8	57.5	64.1	65.6	0.222	-0.154	-0.232	-0.069	0.075	0.106	98.7	77.5	86.6	82.7	89.3	94.3	0.72	0.70	0.59	0.70	0.72	0.70	0.945405	1.000000	-
Rv2501c	accA1	21	116.0	109.1	135.0	107.8	118.9	98.3	0.022	-0.063	0.232	-0.079	0.056	-0.206	137.9	130.9	161.9	135.8	131.4	129.1	0.84	0.83	0.83	0.79	0.90	0.76	0.876574	1.000000	-
Rv2502c	accD1	25	117.2	100.6	120.8	121.1	118.1	88.2	0.075	-0.135	0.116	0.121	0.086	-0.315	144.1	119.8	147.3	128.0	131.3	100.3	0.81	0.84	0.82	0.95	0.90	0.88	0.377421	1.000000	-
Rv2503c	scoB	7	63.1	75.5	84.2	106.7	86.1	77.2	-0.356	-0.114	0.034	0.358	0.064	-0.084	77.9	88.1	117.9	124.5	100.4	90.0	0.81	0.86	0.71	0.86	0.86	0.86	0.824232	1.000000	-
Rv2504c	scoA	12	59.8	53.5	56.9	62.0	62.3	62.5	0.006	-0.140	-0.060	0.055	0.061	0.065	107.6	80.3	105.0	101.4	99.7	83.3	0.56	0.67	0.54	0.61	0.62	0.75	0.987411	1.000000	-
Rv2505c	fadD35	32	130.2	129.3	121.0	123.3	131.5	119.3	0.048	0.039	-0.054	-0.027	0.062	-0.073	140.4	140.3	133.5	128.7	133.6	131.6	0.93	0.92	0.91	0.96	0.98	0.91	0.751500	1.000000	-
Rv2506	-	7	307.0	235.8	338.2	210.0	120.0	205.7	0.372	-0.002	0.509	-0.165	-0.948	-0.195	307.0	235.8	338.2	210.0	120.0	205.7	1.00	1.00	1.00	1.00	1.00	1.00	0.016456	0.203909	-
Rv2507	-	18	5.2	23.2	4.5	28.0	46.0	10.2	-1.266	0.200	-1.364	0.429	1.056	-0.686	23.4	34.7	27.1	35.2	66.2	21.7	0.22	0.67	0.17	0.80	0.69	0.47	0.000000	0.000000	-
Rv2508c	-	15	97.5	131.5	139.6	125.8	120.0	92.4	-0.261	0.152	0.236	0.091	0.026	-0.334	104.4	136.0	139.6	125.8	128.6	92.4	0.93	0.97	1.00	1.00	0.93	1.00	0.089819	0.697233	-
Rv2509	-	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2510c	-	15	137.9	100.5	132.8	132.0	143.9	100.4	0.141	-0.296	0.089	0.080	0.200	-0.298	182.5	150.8	181.2	165.0	179.8	136.9	0.76	0.67	0.73	0.80	0.80	0.73	0.957788	1.000000	-
Rv2511	orn	8	13.0	26.6	11.3	29.4	37.5	25.3	-0.682	0.131	-0.822	0.255	0.557	0.071	34.6	28.4	30.2	35.3	42.8	27.0	0.38	0.94	0.38	0.83	0.88	0.94	0.000039	0.001068	-
Rv2512c	-	15	247.1	254.4	271.1	272.2	263.3	253.1	-0.073	-0.032	0.058	0.064	0.017	-0.039	252.7	272.6	290.4	272.2	263.3	253.1	0.98	0.93	0.93	1.00	1.00	1.00	0.612998	1.000000	-
Rv2513	-	8	48.7	50.2	53.9	59.5	58.9	56.3	-0.151	-0.110	-0.016	0.115	0.100	0.041	58.4	57.4	66.4	71.5	67.3	64.3	0.83	0.88	0.81	0.83	0.88	0.88	0.974303	1.000000	-
Rv2514c	-	5	73.2	79.6	70.8	85.2	84.1	91.7	-0.133	-0.020	-0.178	0.072	0.055	0.173	91.5	113.7	88.5	141.9	120.1	114.6	0.80	0.70	0.80	0.60	0.70	0.80	0.522678	1.000000	-
Rv2515c	-	20	63.1	65.8	66.7	65.2	63.6	65.4	-0.039	0.018	0.035	0.005	-0.029	0.009	78.9	90.8	92.0	85.1	79.5	77.0	0.80	0.72	0.72	0.77	0.80	0.85	0.936483	1.000000	-
Rv2516c	-	13	18.2	23.2	20.2	19.3	22.8	15.6	-0.099	0.179	0.019	-0.037	0.162	-0.273	71.1	100.4	87.6	83.4	84.8	67.5	0.26	0.23	0.23	0.23	0.27	0.23	0.995711	1.000000	-
Rv2517c	-	7	159.2	162.6	151.3	211.3	217.2	159.5	-0.147	-0.118	-0.218	0.250	0.289	-0.145	159.2	162.6	162.9	211.3	217.2	159.5	1.00	1.00	0.93	1.00	1.00	1.00	0.562408	1.000000	-
Rv2518c	lppS	18	40.6	52.7	38.8	46.6	67.1	46.5	-0.237	0.102	-0.293	-0.057	0.424	-0.061	52.2	55.8	60.8	56.0	71.0	49.2	0.78	0.94	0.64	0.83	0.94	0.94	0.012412	0.163986	-
Rv2519	PE26	30	98.7	88.0	82.8	93.0	85.3	87.4	0.139	-0.019	-0.102	0.057	-0.062	-0.027	125.2	110.0	115.5	119.6	104.4	100.9	0.79	0.80	0.72	0.78	0.82	0.87	0.968219	1.000000	-
Rv2520c	-	1	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2521	bcp	9	76.5	65.0	63.0	60.5	72.8	73.9	0.147	-0.072	-0.115	-0.167	0.079	0.099	137.7	117.1	141.6	116.8	100.8	110.8	0.56	0.56	0.44	0.52	0.72	0.67	0.975979	1.000000	-
Rv2522c	-	17	81.4	72.6	87.1	83.3	82.9	79.6	0.004	-0.151	0.097	0.035	0.029	-0.026	106.4	85.1	102.1	101.1	100.7	90.2	0.76	0.85	0.85	0.82	0.82	0.88	0.987873	1.000000	-
Rv2523c	acpS	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2524c	fas	61	0.0	0.0	0.0	0.0	0.0	0.1	-0.004	-0.004	-0.004	-0.004	-0.004	0.021	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.01	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2525c	-	12	198.6	230.6	224.9	214.3	194.8	207.1	-0.090	0.121	0.085	0.017	-0.117	-0.031	198.6	230.6	224.9	214.3	194.8	207.1	1.00	1.00	1.00	1.00	1.00	1.00	0.939351	1.000000	-
Rv2526	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2527	-	9	155.3	122.0	147.6	138.1	159.2	150.1	0.092	-0.244	0.021	-0.071	0.127	0.044	161.3	137.3	166.0	155.4	179.1	168.8	0.96	0.89	0.89	0.89	0.89	0.89	0.933082	1.000000	-
Rv2528c	mrr	9	91.6	113.0	127.8	91.4	141.5	143.5	-0.351	-0.062	0.109	-0.353	0.251	0.270	123.6	169.4	153.4	112.1	181.9	215.2	0.74	0.67	0.83	0.81	0.78	0.67	0.267208	1.000000	-
Rv2529	-	16	104.7	81.3	102.5	82.1	89.5	85.8	0.193	-0.153	0.163	-0.141	-0.022	-0.080	139.7	96.4	126.1	89.5	89.5	98.0	0.75	0.84	0.81	0.92	1.00	0.88	0.022940	0.264257	-
Rv2530c	-	3	31.3	34.1	44.9	41.3	41.8	52.5	-0.342	-0.235	0.119	0.009	0.026	0.322	93.8	68.1	134.8	123.8	125.4	157.4	0.33	0.50	0.33	0.33	0.33	0.33	0.365680	1.000000	-
Rv2530A	-	4	53.2	80.9	89.0	82.7	95.7	105.5	-0.622	-0.058	0.071	-0.030	0.170	0.304	58.0	92.5	101.8	82.7	95.7	105.5	0.92	0.88	0.88	1.00	1.00	1.00	0.541424	1.000000	-
Rv2531c	-	47	90.7	101.7	108.3	101.2	107.3	113.7	-0.185	-0.028	0.058	-0.035	0.045	0.125	114.2	118.1	133.9	118.0	126.1	135.3	0.79	0.86	0.81	0.86	0.85	0.84	0.772577	1.000000	-
Rv2532c	-	5	141.6	153.7	180.4	121.7	136.6	122.2	-0.011	0.104	0.328	-0.221	-0.061	-0.215	141.6	153.7	180.4	121.7	136.6	152.8	1.00	1.00	1.00	1.00	1.00	0.80	0.334742	1.000000	-
Rv2533c	nusB	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2534c	efp	9	0.9	0.0	0.0	0.0	0.0	0.6	0.160	-0.069	-0.069	-0.069	-0.069	0.095	11.6	0.0	0.0	0.0	0.0	10.8	0.07	0.00	0.00	0.00	0.00	0.06	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2535c	pepQ	19	114.2	143.1	92.3	169.9	150.1	137.7	-0.227	0.086	-0.520	0.326	0.152	0.032	127.6	159.9	106.3	176.1	162.9	149.5	0.89	0.89	0.87	0.96	0.92	0.92	0.141199	0.917561	-
Rv2536	-	8	102.8	131.2	128.9	175.0	140.5	166.7	-0.436	-0.099	-0.124	0.304	-0.003	0.236	117.5	139.9	137.5	182.6	160.6	166.7	0.88	0.94	0.94	0.96	0.88	1.00	0.728816	1.000000	-
Rv2537c	aroD	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2538c	aroB	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2539c	aroK	5	0.0	0.0	0.0	0.0	0.0	5.3	-0.233	-0.233	-0.233	-0.233	-0.233	0.805	0.0	0.0	0.0	0.0	0.0	17.6	0.00	0.00	0.00	0.00	0.00	0.30	0.047895	0.460489	-
Rv2540c	aroF	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2541	-	2	169.3	131.5	171.7	190.5	221.0	119.2	0.018	-0.336	0.038	0.183	0.392	-0.471	169.3	131.5	171.7	190.5	221.0	119.2	1.00	1.00	1.00	1.00	1.00	1.00	0.718288	1.000000	-
Rv2542	-	11	163.8	198.1	219.3	177.3	177.4	170.1	-0.166	0.101	0.245	-0.055	-0.054	-0.113	200.2	217.9	229.8	201.8	205.5	187.1	0.82	0.91	0.95	0.88	0.86	0.91	0.965658	1.000000	-
Rv2543	lppA	14	149.4	139.8	140.5	125.0	130.4	137.9	0.119	0.026	0.033	-0.129	-0.070	0.008	174.3	206.0	178.8	187.5	166.0	167.9	0.86	0.68	0.79	0.67	0.79	0.82	0.639071	1.000000	-
Rv2544	lppB	15	35.7	28.4	33.1	27.8	29.8	23.5	0.230	-0.055	0.135	-0.083	0.004	-0.286	123.7	94.8	99.4	83.4	81.4	58.7	0.29	0.30	0.33	0.33	0.37	0.40	0.993069	1.000000	-
Rv2545	-	10	229.9	206.4	252.7	193.1	250.9	229.7	0.017	-0.135	0.151	-0.229	0.141	0.016	229.9	217.3	252.7	214.5	250.9	229.7	1.00	0.95	1.00	0.90	1.00	1.00	0.375069	1.000000	-
Rv2546	-	9	249.2	327.8	245.6	256.2	249.7	259.4	-0.085	0.303	-0.106	-0.046	-0.082	-0.028	258.8	368.7	260.0	288.2	281.0	274.7	0.96	0.89	0.94	0.89	0.89	0.94	0.837326	1.000000	-
Rv2547	-	2	215.0	237.6	223.6	268.7	262.5	283.0	-0.204	-0.063	-0.148	0.111	0.078	0.185	215.0	237.6	223.6	268.7	262.5	283.0	1.00	1.00	1.00	1.00	1.00	1.00	0.592966	1.000000	-
Rv2548	-	4	106.8	109.3	150.5	84.4	120.0	82.9	-0.028	0.004	0.448	-0.351	0.133	-0.375	160.2	218.7	200.7	144.7	160.0	82.9	0.67	0.50	0.75	0.58	0.75	1.00	0.274445	1.000000	-
Rv2549c	-	4	269.5	285.0	257.5	248.5	252.9	287.9	0.014	0.093	-0.051	-0.101	-0.076	0.107	269.5	285.0	257.5	248.5	252.9	287.9	1.00	1.00	1.00	1.00	1.00	1.00	0.971917	1.000000	-
Rv2550c	-	5	71.3	75.6	72.5	79.8	74.2	78.6	-0.075	0.006	-0.052	0.079	-0.021	0.057	152.8	126.1	145.0	99.8	82.4	98.2	0.47	0.60	0.50	0.80	0.90	0.80	0.520743	1.000000	-
Rv2551c	-	2	258.0	373.9	339.2	292.5	290.6	174.8	-0.157	0.370	0.232	0.021	0.012	-0.705	387.0	373.9	339.2	585.0	581.2	349.6	0.67	1.00	1.00	0.50	0.50	0.50	0.449867	1.000000	-
Rv2552c	aroE	5	1.5	2.1	0.0	17.2	0.0	0.0	-0.380	-0.258	-0.760	1.391	-0.760	-0.760	22.6	10.4	0.0	86.0	0.0	0.0	0.07	0.20	0.00	0.20	0.00	0.00	0.102300	0.747564	-
Rv2553c	-	16	63.9	95.3	64.7	63.4	101.3	68.5	-0.236	0.305	-0.221	-0.247	0.389	-0.144	71.4	113.0	76.6	72.5	111.8	75.6	0.90	0.84	0.84	0.88	0.91	0.91	0.006502	0.098275	-
Rv2554c	-	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2555c	alaS	39	0.0	0.0	0.0	0.1	0.0	0.0	-0.006	-0.006	-0.006	0.029	-0.006	-0.006	0.0	0.0	0.0	14.4	0.0	0.0	0.00	0.00	0.00	0.01	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2556c	-	5	92.7	136.4	105.1	97.8	137.6	67.9	-0.187	0.346	-0.015	-0.114	0.358	-0.610	139.1	151.6	131.3	133.4	152.9	84.9	0.67	0.90	0.80	0.73	0.90	0.80	0.913283	1.000000	-
Rv2557	-	9	185.8	186.6	185.9	163.3	168.9	146.5	0.102	0.108	0.102	-0.080	-0.033	-0.231	185.8	186.6	185.9	163.3	168.9	146.5	1.00	1.00	1.00	1.00	1.00	1.00	0.818381	1.000000	-
Rv2558	-	4	352.6	364.7	337.8	336.1	296.1	373.4	0.038	0.085	-0.024	-0.031	-0.211	0.119	352.6	364.7	337.8	336.1	296.1	373.4	1.00	1.00	1.00	1.00	1.00	1.00	0.992938	1.000000	-
Rv2559c	-	14	185.4	157.6	148.9	182.6	167.9	155.6	0.152	-0.076	-0.154	0.131	0.013	-0.093	204.9	176.5	154.5	196.7	188.0	155.6	0.90	0.89	0.96	0.93	0.89	1.00	0.608299	1.000000	-
Rv2560	-	24	115.9	129.8	118.2	105.3	93.6	119.9	0.026	0.183	0.052	-0.107	-0.269	0.072	141.5	138.5	141.8	122.3	104.5	130.8	0.82	0.94	0.83	0.86	0.90	0.92	0.784996	1.000000	-
Rv2561	-	3	232.4	384.8	302.0	298.9	250.8	321.8	-0.354	0.361	0.017	0.002	-0.247	0.107	232.4	384.8	302.0	298.9	250.8	321.8	1.00	1.00	1.00	1.00	1.00	1.00	0.669550	1.000000	-
Rv2562	-	8	179.6	159.6	150.6	186.8	191.5	186.6	0.030	-0.136	-0.216	0.085	0.120	0.084	179.6	159.6	150.6	186.8	191.5	186.6	1.00	1.00	1.00	1.00	1.00	1.00	0.930814	1.000000	-
Rv2563	-	8	144.0	125.0	155.5	147.9	165.5	188.1	-0.097	-0.293	0.010	-0.059	0.098	0.277	164.5	125.0	155.5	169.0	165.5	188.1	0.88	1.00	1.00	0.88	1.00	1.00	0.245511	1.000000	-
Rv2564	glnQ	12	153.4	137.9	163.1	147.3	143.8	136.2	0.060	-0.089	0.146	0.004	-0.031	-0.106	162.4	150.4	163.1	147.3	143.8	148.6	0.94	0.92	1.00	1.00	1.00	0.92	0.556602	1.000000	-
Rv2565	-	22	94.2	75.3	95.7	82.2	78.8	81.0	0.148	-0.157	0.169	-0.037	-0.096	-0.058	121.9	92.1	113.8	104.4	88.9	101.9	0.77	0.82	0.84	0.79	0.89	0.80	0.885123	1.000000	-
Rv2566	-	42	201.4	189.8	204.2	206.3	194.2	181.9	0.036	-0.048	0.056	0.070	-0.015	-0.107	222.6	199.3	225.7	222.1	209.2	198.4	0.90	0.95	0.90	0.93	0.93	0.92	0.995659	1.000000	-
Rv2567	-	34	74.2	82.9	85.2	79.8	77.5	69.8	-0.072	0.078	0.117	0.026	-0.013	-0.153	90.0	110.5	96.6	104.3	94.0	76.6	0.82	0.75	0.88	0.76	0.82	0.91	0.045093	0.446138	-
Rv2568c	-	17	33.5	29.0	25.2	28.8	32.5	31.7	0.132	-0.049	-0.216	-0.055	0.095	0.064	51.8	46.9	42.9	45.9	46.1	43.2	0.65	0.62	0.59	0.63	0.71	0.74	0.995405	1.000000	-
Rv2569c	-	22	34.3	48.3	47.2	38.1	47.9	44.4	-0.300	0.141	0.110	-0.166	0.129	0.031	45.3	59.1	67.0	48.4	57.0	52.8	0.76	0.82	0.70	0.79	0.84	0.84	0.630636	1.000000	-
Rv2570	-	3	86.4	93.7	61.6	76.4	58.0	86.6	0.155	0.265	-0.303	-0.012	-0.382	0.158	86.4	112.4	73.9	86.0	87.1	86.6	1.00	0.83	0.83	0.89	0.67	1.00	0.657404	1.000000	-
Rv2571c	-	6	227.9	204.9	189.3	240.8	238.0	215.0	0.054	-0.096	-0.207	0.132	0.115	-0.028	273.5	245.9	227.2	270.9	285.6	215.0	0.83	0.83	0.83	0.89	0.83	1.00	0.871417	1.000000	-
Rv2572c	aspS	19	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2573	-	3	430.0	346.1	362.8	337.2	415.2	260.8	0.258	-0.051	0.016	-0.088	0.208	-0.452	430.0	346.1	362.8	337.2	415.2	260.8	1.00	1.00	1.00	1.00	1.00	1.00	0.708754	1.000000	-
Rv2574	-	6	193.6	211.9	151.5	156.8	172.8	130.6	0.186	0.313	-0.157	-0.109	0.027	-0.364	205.0	211.9	151.5	156.8	172.8	130.6	0.94	1.00	1.00	1.00	1.00	1.00	0.892605	1.000000	-
Rv2575	-	17	98.3	97.3	99.3	81.4	96.8	79.7	0.090	0.074	0.102	-0.169	0.067	-0.197	135.5	127.2	140.6	115.3	137.1	96.8	0.73	0.76	0.71	0.71	0.71	0.82	0.964842	1.000000	-
Rv2576c	-	10	177.0	172.8	143.2	169.2	177.7	158.5	0.087	0.053	-0.210	0.023	0.092	-0.068	177.0	192.0	150.7	175.0	177.7	176.1	1.00	0.90	0.95	0.97	1.00	0.90	0.643210	1.000000	-
Rv2577	-	36	89.7	97.9	91.7	90.3	89.4	77.6	0.004	0.124	0.035	0.013	-0.001	-0.194	106.4	119.5	112.0	102.7	107.3	96.3	0.84	0.82	0.82	0.88	0.83	0.81	0.780981	1.000000	-
Rv2578c	-	16	131.6	127.9	118.9	107.8	126.1	125.4	0.094	0.055	-0.046	-0.182	0.035	0.027	146.9	136.4	140.9	117.6	134.5	138.4	0.90	0.94	0.84	0.92	0.94	0.91	0.971372	1.000000	-
Rv2579	dhaA	11	211.1	216.0	205.0	215.2	175.5	192.0	0.059	0.091	0.018	0.086	-0.201	-0.075	290.3	237.5	250.6	273.2	214.5	248.5	0.73	0.91	0.82	0.79	0.82	0.77	0.971484	1.000000	-
Rv2580c	hisS	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2581c	-	7	21.3	20.3	25.0	32.6	43.3	25.4	-0.327	-0.381	-0.137	0.188	0.550	-0.116	55.9	47.4	87.4	76.0	86.6	50.8	0.38	0.43	0.29	0.43	0.50	0.50	0.964523	1.000000	-
Rv2582	ppiB	17	1.2	3.0	0.0	3.8	7.4	2.1	-0.348	0.015	-0.663	0.158	0.646	-0.165	15.6	17.0	0.0	39.1	25.1	23.4	0.08	0.18	0.00	0.10	0.29	0.09	0.017179	0.210910	-
Rv2583c	relA	33	23.6	42.7	21.5	19.5	16.6	32.8	-0.122	0.616	-0.234	-0.343	-0.526	0.281	42.5	65.6	42.9	43.0	33.2	54.1	0.56	0.65	0.50	0.45	0.50	0.61	0.001070	0.021389	-
Rv2584c	apt	10	165.2	171.0	186.5	174.7	158.6	163.4	-0.039	0.009	0.131	0.039	-0.096	-0.055	183.5	190.0	207.3	218.3	176.2	163.4	0.90	0.90	0.90	0.80	0.90	1.00	0.681694	1.000000	-
Rv2585c	-	24	148.5	149.9	136.1	163.4	166.8	149.0	-0.035	-0.022	-0.156	0.099	0.127	-0.030	164.5	167.3	155.6	178.3	174.1	166.4	0.90	0.90	0.88	0.92	0.96	0.90	0.958836	1.000000	-
Rv2586c	secF	17	48.3	68.6	53.2	100.3	96.0	59.3	-0.510	-0.046	-0.384	0.471	0.411	-0.240	68.5	77.7	82.2	118.9	105.3	69.5	0.71	0.88	0.65	0.84	0.91	0.85	0.042146	0.423900	-
Rv2587c	secD	21	25.7	37.6	20.5	53.7	65.2	34.4	-0.536	-0.062	-0.802	0.398	0.656	-0.177	46.2	46.5	37.5	60.4	72.0	42.5	0.56	0.81	0.55	0.89	0.90	0.81	0.000000	0.000015	-
Rv2588c	yajC	2	94.4	168.8	107.8	104.0	124.6	199.6	-0.476	0.331	-0.293	-0.342	-0.093	0.566	94.4	168.8	107.8	104.0	124.6	199.6	1.00	1.00	1.00	1.00	1.00	1.00	0.286146	1.000000	-
Rv2589	gabT	22	226.4	212.8	213.9	222.3	209.1	227.4	0.049	-0.038	-0.031	0.024	-0.063	0.055	249.1	222.9	229.5	244.6	219.1	244.0	0.91	0.95	0.93	0.91	0.95	0.93	0.996445	1.000000	-
Rv2590	fadD9	55	151.8	178.3	170.8	183.2	178.2	183.9	-0.194	0.031	-0.029	0.069	0.030	0.074	164.8	185.0	186.1	196.3	188.5	202.3	0.92	0.96	0.92	0.93	0.95	0.91	0.169900	0.999880	-
Rv2591	PE_PGRS44	12	218.4	219.3	234.7	202.9	262.5	238.6	-0.069	-0.064	0.032	-0.173	0.190	0.056	224.6	239.2	234.7	221.4	286.3	272.7	0.97	0.92	1.00	0.92	0.92	0.88	0.297123	1.000000	-
Rv2592c	ruvB	8	47.3	64.1	58.0	56.8	73.3	53.8	-0.288	0.113	-0.020	-0.047	0.293	-0.119	75.7	93.2	84.4	85.3	97.7	66.2	0.62	0.69	0.69	0.67	0.75	0.81	0.988445	1.000000	-
Rv2593c	ruvA	6	70.2	67.8	67.2	50.9	68.7	99.7	-0.010	-0.057	-0.070	-0.439	-0.040	0.467	97.3	81.4	89.6	83.3	68.7	133.0	0.72	0.83	0.75	0.61	1.00	0.75	0.315773	1.000000	-
Rv2594c	ruvC	4	24.1	29.1	18.8	18.9	16.9	17.9	0.164	0.396	-0.126	-0.121	-0.243	-0.180	57.8	38.8	50.1	37.7	22.6	35.8	0.42	0.75	0.38	0.50	0.75	0.50	0.350370	1.000000	-
Rv2595	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2596	-	8	246.6	260.2	217.5	241.3	249.7	271.6	-0.007	0.069	-0.184	-0.038	0.011	0.130	246.6	260.2	217.5	241.3	249.7	271.6	1.00	1.00	1.00	1.00	1.00	1.00	0.964851	1.000000	-
Rv2597	-	6	405.0	341.1	399.9	327.2	347.2	341.9	0.166	-0.078	0.148	-0.137	-0.053	-0.075	405.0	341.1	399.9	327.2	347.2	341.9	1.00	1.00	1.00	1.00	1.00	1.00	0.738607	1.000000	-
Rv2598	-	4	233.7	177.9	204.9	152.7	236.2	196.2	0.218	-0.166	0.032	-0.380	0.233	-0.029	233.7	177.9	273.2	183.2	236.2	196.2	1.00	1.00	0.75	0.83	1.00	1.00	0.459846	1.000000	-
Rv2599	-	12	155.0	133.5	140.9	146.6	183.3	138.5	0.049	-0.159	-0.084	-0.029	0.284	-0.108	155.0	133.5	161.0	146.6	183.3	151.1	1.00	1.00	0.88	1.00	1.00	0.92	0.231642	1.000000	-
Rv2600	-	8	170.5	140.5	181.3	146.6	166.4	158.5	0.084	-0.187	0.170	-0.127	0.049	-0.019	194.9	172.9	181.3	167.6	190.1	181.2	0.88	0.81	1.00	0.88	0.88	0.88	0.852132	1.000000	-
Rv2601	speE	24	253.3	220.3	245.7	218.4	232.9	225.9	0.120	-0.077	0.077	-0.090	0.001	-0.042	253.3	225.0	251.0	221.4	232.9	230.7	1.00	0.98	0.98	0.99	1.00	0.98	0.905746	1.000000	-
Rv2601A	-	2	13.1	2.6	6.3	18.9	0.0	5.1	0.517	-0.736	-0.164	0.917	-1.340	-0.333	26.2	10.4	25.2	22.7	0.0	10.1	0.50	0.25	0.25	0.83	0.00	0.50	0.184788	1.000000	-
Rv2602	-	7	266.9	275.8	260.0	285.3	282.3	308.8	-0.067	-0.020	-0.104	0.027	0.012	0.140	266.9	275.8	260.0	285.3	282.3	308.8	1.00	1.00	1.00	1.00	1.00	1.00	0.986674	1.000000	-
Rv2603c	-	7	20.9	18.9	12.0	19.9	17.4	25.2	0.108	-0.009	-0.497	0.048	-0.102	0.327	27.5	24.1	24.1	29.8	24.4	29.4	0.76	0.79	0.50	0.67	0.71	0.86	0.626231	1.000000	-
Rv2604c	-	4	65.6	57.4	81.1	70.0	66.1	55.5	-0.008	-0.185	0.280	0.080	0.004	-0.230	65.6	76.5	92.7	93.3	88.2	74.0	1.00	0.75	0.88	0.75	0.75	0.75	0.374385	1.000000	-
Rv2605c	tesB2	9	137.3	126.8	125.4	78.9	100.9	129.1	0.229	0.119	0.103	-0.533	-0.197	0.144	142.6	134.3	125.4	81.9	100.9	129.1	0.96	0.94	1.00	0.96	1.00	1.00	0.273729	1.000000	-
Rv2606c	-	10	115.6	112.6	160.5	87.6	109.7	117.8	-0.021	-0.056	0.436	-0.401	-0.092	0.006	144.5	125.1	160.5	90.6	121.9	130.9	0.80	0.90	1.00	0.97	0.90	0.90	0.142802	0.923467	-
Rv2607	pdxH	12	135.4	131.2	151.0	155.6	146.1	147.3	-0.090	-0.134	0.062	0.104	0.016	0.027	147.7	143.1	172.5	180.8	152.4	176.7	0.92	0.92	0.88	0.86	0.96	0.83	0.863874	1.000000	-
Rv2608	PPE42	30	96.9	109.1	99.3	105.5	103.6	112.2	-0.103	0.060	-0.070	0.014	-0.011	0.099	122.8	125.9	126.8	121.8	124.4	120.2	0.79	0.87	0.78	0.87	0.83	0.93	0.796785	1.000000	-
Rv2609c	-	13	67.0	94.3	111.9	87.6	118.2	86.3	-0.463	0.001	0.236	-0.100	0.313	-0.120	130.6	175.1	207.7	162.7	219.5	160.2	0.51	0.54	0.54	0.54	0.54	0.54	0.877205	1.000000	-
Rv2610c	pimA	14	0.0	0.0	0.0	0.0	0.0	0.4	-0.018	-0.018	-0.018	-0.018	-0.018	0.089	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.04	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2611c	-	13	1.6	1.5	3.8	0.7	3.3	0.0	-0.046	-0.060	0.371	-0.258	0.275	-0.450	21.0	13.4	33.2	13.9	14.2	0.0	0.08	0.12	0.12	0.05	0.23	0.00	0.144918	0.930416	-
Rv2612c	pgsA1	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2613c	-	9	26.2	36.2	26.7	33.9	34.7	25.0	-0.184	0.217	-0.162	0.134	0.163	-0.241	44.2	65.2	43.7	76.3	44.6	37.5	0.59	0.56	0.61	0.44	0.78	0.67	0.070026	0.599576	-
Rv2614c	thrS	27	0.3	0.0	0.0	0.0	0.3	0.0	0.052	-0.026	-0.026	-0.026	0.049	-0.026	22.6	0.0	0.0	0.0	14.5	0.0	0.01	0.00	0.00	0.00	0.02	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2614A	-	6	51.3	55.0	37.7	44.5	38.5	40.4	0.184	0.276	-0.216	-0.001	-0.189	-0.127	77.0	66.0	64.6	53.4	57.8	48.5	0.67	0.83	0.58	0.83	0.67	0.83	0.886686	1.000000	-
Rv2615c	PE_PGRS45	16	203.6	228.3	214.5	183.9	176.2	179.6	0.041	0.203	0.115	-0.101	-0.162	-0.135	296.1	332.1	381.4	259.7	194.4	221.1	0.69	0.69	0.56	0.71	0.91	0.81	0.235907	1.000000	-
Rv2616	-	4	256.4	275.6	257.6	253.2	227.1	236.4	0.030	0.132	0.037	0.012	-0.142	-0.085	256.4	275.6	257.6	337.5	227.1	315.2	1.00	1.00	1.00	0.75	1.00	0.75	0.224496	1.000000	-
Rv2617c	-	8	419.3	348.9	368.3	361.2	352.1	335.7	0.201	-0.061	0.016	-0.012	-0.048	-0.116	419.3	348.9	368.3	361.2	352.1	335.7	1.00	1.00	1.00	1.00	1.00	1.00	0.937346	1.000000	-
Rv2618	-	9	191.7	148.3	197.8	148.0	163.8	172.5	0.166	-0.194	0.210	-0.197	-0.055	0.018	207.0	166.8	222.5	166.5	173.5	172.5	0.93	0.89	0.89	0.89	0.94	1.00	0.877725	1.000000	-
Rv2619c	-	2	212.6	156.6	162.6	166.7	156.0	109.7	0.393	-0.036	0.016	0.051	-0.041	-0.531	212.6	156.6	162.6	166.7	156.0	109.7	1.00	1.00	1.00	1.00	1.00	1.00	0.777162	1.000000	-
Rv2620c	-	4	123.5	151.7	84.3	133.4	145.3	175.2	-0.129	0.156	-0.655	-0.022	0.097	0.358	123.5	151.7	84.3	133.4	145.3	175.2	1.00	1.00	1.00	1.00	1.00	1.00	0.090016	0.697405	-
Rv2621c	-	4	44.4	62.5	64.8	60.2	37.9	72.9	-0.330	0.121	0.168	0.069	-0.534	0.327	88.9	100.1	86.4	80.2	60.6	97.2	0.50	0.62	0.75	0.75	0.62	0.75	0.945101	1.000000	-
Rv2622	-	8	131.2	129.6	115.8	135.2	116.9	141.4	0.030	0.014	-0.143	0.073	-0.130	0.135	157.4	148.1	168.4	147.5	143.8	161.6	0.83	0.88	0.69	0.92	0.81	0.88	0.959304	1.000000	-
Rv2623	TB31.7	7	64.3	63.0	83.1	69.8	70.2	71.1	-0.119	-0.147	0.227	-0.009	-0.000	0.017	96.5	110.2	105.7	77.1	81.9	71.1	0.67	0.57	0.79	0.90	0.86	1.00	0.127798	0.855563	-
Rv2624c	-	11	61.7	77.8	64.0	61.1	53.4	50.3	0.008	0.319	0.056	-0.006	-0.185	-0.264	75.4	90.1	88.0	91.6	69.1	58.2	0.82	0.86	0.73	0.67	0.77	0.86	0.575236	1.000000	-
Rv2625c	-	18	126.7	88.2	110.0	98.3	111.5	74.9	0.305	-0.194	0.109	-0.045	0.129	-0.417	148.8	105.8	123.7	120.6	121.7	99.8	0.85	0.83	0.89	0.81	0.92	0.75	0.601175	1.000000	-
Rv2626c	-	6	66.2	74.3	68.5	44.4	41.2	48.2	0.196	0.353	0.243	-0.331	-0.428	-0.225	91.6	111.5	91.3	57.1	49.4	72.3	0.72	0.67	0.75	0.78	0.83	0.67	0.839133	1.000000	-
Rv2627c	-	21	55.2	40.2	50.3	34.4	38.7	41.4	0.316	-0.098	0.193	-0.296	-0.145	-0.060	64.4	46.9	60.4	42.5	45.2	54.3	0.86	0.86	0.83	0.81	0.86	0.76	0.289416	1.000000	-
Rv2628	-	8	129.3	76.6	112.8	106.3	110.7	69.8	0.343	-0.376	0.153	0.072	0.127	-0.502	172.4	94.3	128.9	141.7	118.1	85.9	0.75	0.81	0.88	0.75	0.94	0.81	0.704045	1.000000	-
Rv2629	-	21	81.1	66.1	85.6	82.8	77.4	69.8	0.069	-0.208	0.141	0.097	0.005	-0.136	100.2	77.1	105.7	111.0	87.9	97.7	0.81	0.86	0.81	0.75	0.88	0.71	0.413459	1.000000	-
Rv2630	-	9	76.1	73.3	88.9	114.6	112.8	86.9	-0.260	-0.311	-0.048	0.301	0.279	-0.079	93.3	82.4	106.7	119.0	119.4	104.3	0.81	0.89	0.83	0.96	0.94	0.83	0.613803	1.000000	-
Rv2631	-	20	112.5	129.6	118.8	136.4	111.1	123.0	-0.111	0.085	-0.035	0.156	-0.128	0.013	129.8	144.0	144.0	151.6	123.5	140.6	0.87	0.90	0.82	0.90	0.90	0.88	0.989939	1.000000	-
Rv2632c	-	3	58.3	68.0	31.3	58.8	64.1	66.4	0.012	0.217	-0.789	0.022	0.137	0.184	87.5	102.0	47.0	88.2	64.1	99.5	0.67	0.67	0.67	0.67	1.00	0.67	0.662046	1.000000	-
Rv2633c	-	10	120.8	132.2	108.9	135.6	96.3	148.4	-0.033	0.093	-0.177	0.127	-0.346	0.254	129.4	155.6	108.9	140.2	96.3	156.3	0.93	0.85	1.00	0.97	1.00	0.95	0.167807	0.996892	-
Rv2634c	PE_PGRS46	32	133.1	131.9	131.1	142.2	130.4	126.3	0.007	-0.006	-0.015	0.098	-0.022	-0.067	199.7	205.9	215.1	203.7	170.3	165.0	0.67	0.64	0.61	0.70	0.77	0.77	0.875786	1.000000	-
Rv2635	-	6	63.7	79.8	59.2	66.7	61.2	57.1	-0.019	0.285	-0.116	0.043	-0.073	-0.166	114.7	79.8	59.2	70.7	61.2	68.5	0.56	1.00	1.00	0.94	1.00	0.83	0.001086	0.021553	-
Rv2636	-	14	158.4	163.2	160.3	158.5	156.2	162.8	-0.013	0.029	0.003	-0.013	-0.033	0.025	179.8	175.7	166.2	158.5	168.2	175.3	0.88	0.93	0.96	1.00	0.93	0.93	0.524103	1.000000	-
Rv2637	dedA	9	147.5	143.6	125.0	190.3	156.9	144.6	-0.036	-0.073	-0.266	0.321	0.051	-0.063	147.5	143.6	140.6	190.3	156.9	144.6	1.00	1.00	0.89	1.00	1.00	1.00	0.572983	1.000000	-
Rv2638	-	4	136.9	152.4	106.2	122.3	109.6	104.6	0.160	0.310	-0.191	0.003	-0.148	-0.213	136.9	152.4	106.2	122.3	109.6	104.6	1.00	1.00	1.00	1.00	1.00	1.00	0.888764	1.000000	-
Rv2639c	-	6	125.6	91.1	87.6	103.6	158.4	105.5	0.159	-0.283	-0.337	-0.107	0.482	-0.082	133.0	109.4	87.6	103.6	158.4	105.5	0.94	0.83	1.00	1.00	1.00	1.00	0.190572	1.000000	-
Rv2640c	-	4	185.4	199.0	151.7	106.2	78.3	170.9	0.310	0.409	0.029	-0.466	-0.883	0.196	185.4	199.0	151.7	106.2	78.3	170.9	1.00	1.00	1.00	1.00	1.00	1.00	0.057970	0.525679	-
Rv2641	cadI	6	63.7	73.8	62.2	61.0	57.1	57.7	0.023	0.221	-0.008	-0.034	-0.122	-0.108	95.5	98.4	83.0	78.4	76.2	69.3	0.67	0.75	0.75	0.78	0.75	0.83	0.999083	1.000000	-
Rv2642	-	4	209.1	200.3	196.1	174.3	190.1	198.4	0.100	0.040	0.010	-0.155	-0.034	0.026	209.1	200.3	196.1	174.3	190.1	198.4	1.00	1.00	1.00	1.00	1.00	1.00	0.992802	1.000000	-
Rv2643	arsC	30	144.1	146.9	128.3	154.0	144.0	150.8	-0.006	0.021	-0.167	0.087	-0.006	0.058	147.4	152.0	132.7	159.3	144.0	158.7	0.98	0.97	0.97	0.97	1.00	0.95	0.540658	1.000000	-
Rv2644c	-	6	52.1	55.9	54.9	83.8	71.1	84.5	-0.337	-0.241	-0.267	0.302	0.080	0.313	66.9	67.1	82.3	94.3	85.4	101.4	0.78	0.83	0.67	0.89	0.83	0.83	0.598051	1.000000	-
Rv2645	-	4	102.5	73.0	57.8	77.3	92.4	76.4	0.340	-0.122	-0.436	-0.045	0.198	-0.060	111.8	73.0	66.0	77.3	92.4	76.4	0.92	1.00	0.88	1.00	1.00	1.00	0.710115	1.000000	-
Rv2646	-	19	212.3	202.1	184.0	196.6	182.6	183.3	0.131	0.061	-0.071	0.023	-0.081	-0.076	212.3	207.5	188.9	196.6	182.6	193.4	1.00	0.97	0.97	1.00	1.00	0.95	0.647485	1.000000	-
Rv2647	-	5	35.0	45.9	37.5	43.7	39.0	32.4	-0.135	0.214	-0.047	0.148	0.002	-0.231	52.5	91.9	46.9	72.8	65.0	54.0	0.67	0.50	0.80	0.60	0.60	0.60	0.711316	1.000000	-
Rv2648	-	4	185.0	228.2	206.6	239.8	235.6	156.0	-0.169	0.127	-0.013	0.197	0.172	-0.407	222.0	228.2	206.6	239.8	235.6	156.0	0.83	1.00	1.00	1.00	1.00	1.00	0.652492	1.000000	-
Rv2649	-	22	277.1	280.5	315.5	295.6	276.3	294.6	-0.064	-0.047	0.120	0.028	-0.068	0.023	345.0	333.6	385.6	368.1	328.6	332.3	0.80	0.84	0.82	0.80	0.84	0.89	0.998502	1.000000	-
Rv2650c	-	8	38.2	8.4	19.6	30.1	13.5	20.6	0.694	-1.000	-0.120	0.392	-0.528	-0.063	61.1	22.3	39.2	60.1	27.1	36.6	0.62	0.38	0.50	0.50	0.50	0.56	0.049043	0.464875	-
Rv2651c	-	5	4.6	26.3	33.3	7.6	23.1	11.1	-1.244	0.466	0.757	-0.848	0.312	-0.495	17.1	43.8	66.5	37.9	46.2	36.9	0.27	0.60	0.50	0.20	0.50	0.30	0.063574	0.556273	-
Rv2652c	-	7	40.9	42.1	17.0	21.0	21.8	38.9	0.379	0.417	-0.679	-0.439	-0.398	0.314	71.6	45.4	34.1	34.0	33.9	45.4	0.57	0.93	0.50	0.62	0.64	0.86	0.124930	0.842014	-
Rv2653c	-	4	24.8	44.5	76.0	33.8	57.7	45.9	-0.806	-0.074	0.636	-0.428	0.267	-0.033	49.6	59.4	152.0	40.5	65.9	91.9	0.50	0.75	0.50	0.83	0.88	0.50	0.060206	0.538616	-
Rv2654c	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2655c	-	19	154.4	165.8	184.9	164.9	155.0	179.9	-0.114	-0.014	0.139	-0.021	-0.108	0.100	160.0	165.8	195.1	164.9	159.2	179.9	0.96	1.00	0.95	1.00	0.97	1.00	0.518524	1.000000	-
Rv2656c	-	4	129.4	191.9	190.1	249.2	176.9	161.4	-0.485	0.066	0.052	0.434	-0.049	-0.177	141.2	191.9	190.1	249.2	176.9	161.4	0.92	1.00	1.00	1.00	1.00	1.00	0.889451	1.000000	-
Rv2657c	-	5	80.8	131.2	83.7	95.3	107.7	104.6	-0.300	0.368	-0.251	-0.074	0.095	0.055	93.2	164.0	83.7	95.3	107.7	104.6	0.87	0.80	1.00	1.00	1.00	1.00	0.041977	0.423900	-
Rv2658c	-	10	190.3	180.3	190.6	212.6	193.2	207.6	-0.040	-0.116	-0.038	0.116	-0.019	0.083	219.6	200.3	211.7	219.9	214.6	207.6	0.87	0.90	0.90	0.97	0.90	1.00	0.868953	1.000000	-
Rv2659c	-	20	151.2	168.9	128.7	172.2	148.3	180.3	-0.064	0.091	-0.288	0.118	-0.091	0.183	156.5	168.9	132.0	181.2	156.1	180.3	0.97	1.00	0.97	0.95	0.95	1.00	0.271843	1.000000	-
Rv2660c	-	3	92.4	122.3	90.8	130.0	133.6	166.1	-0.389	-0.003	-0.413	0.082	0.120	0.424	166.3	146.7	272.4	195.1	200.4	249.2	0.56	0.83	0.33	0.67	0.67	0.67	0.953415	1.000000	-
Rv2661c	-	2	177.4	196.3	158.3	185.7	177.3	186.2	-0.022	0.120	-0.182	0.042	-0.023	0.046	177.4	196.3	158.3	185.7	177.3	186.2	1.00	1.00	1.00	1.00	1.00	1.00	0.938120	1.000000	-
Rv2662	-	4	116.2	113.3	108.5	94.9	118.5	89.6	0.116	0.081	0.022	-0.163	0.143	-0.242	139.4	151.1	124.0	103.5	158.0	119.4	0.83	0.75	0.88	0.92	0.75	0.75	0.932283	1.000000	-
Rv2663	-	9	151.2	149.2	128.6	175.4	135.4	158.5	0.013	-0.005	-0.212	0.222	-0.140	0.080	151.2	149.2	144.7	175.4	135.4	158.5	1.00	1.00	0.89	1.00	1.00	1.00	0.472376	1.000000	-
Rv2664	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2665	-	5	85.6	72.3	71.8	46.3	67.0	63.6	0.316	0.088	0.078	-0.504	-0.016	-0.085	98.7	72.3	79.8	53.4	67.0	63.6	0.87	1.00	0.90	0.87	1.00	1.00	0.536378	1.000000	-
Rv2666	-	9	295.5	276.5	306.1	289.4	246.6	288.8	0.057	-0.037	0.107	0.027	-0.199	0.025	332.4	311.0	324.1	289.4	246.6	288.8	0.89	0.89	0.94	1.00	1.00	1.00	0.513403	1.000000	-
Rv2667	clpC2	5	133.4	203.9	124.2	148.9	167.7	171.2	-0.238	0.356	-0.337	-0.085	0.082	0.111	166.7	254.8	155.2	186.1	209.7	214.1	0.80	0.80	0.80	0.80	0.80	0.80	0.652448	1.000000	-
Rv2668	-	9	125.5	152.0	164.6	241.6	240.0	158.9	-0.507	-0.240	-0.129	0.411	0.402	-0.179	135.5	152.0	164.6	271.8	240.0	158.9	0.93	1.00	1.00	0.89	1.00	1.00	0.001511	0.028578	-
Rv2669	-	6	53.8	54.3	48.8	57.5	49.5	39.0	0.084	0.096	-0.043	0.171	-0.027	-0.334	74.5	81.5	97.7	94.0	84.8	66.9	0.72	0.67	0.50	0.61	0.58	0.58	0.969393	1.000000	-
Rv2670c	-	16	96.1	106.8	97.8	87.0	99.5	92.1	-0.006	0.139	0.017	-0.143	0.041	-0.064	107.3	122.0	130.4	99.4	113.7	113.4	0.90	0.88	0.75	0.88	0.88	0.81	0.800507	1.000000	-
Rv2671	ribD	10	67.7	97.6	68.8	103.8	80.6	113.7	-0.366	0.131	-0.345	0.216	-0.130	0.342	88.3	114.8	76.4	111.2	94.8	133.8	0.77	0.85	0.90	0.93	0.85	0.85	0.406225	1.000000	-
Rv2672	-	16	136.1	135.0	128.8	162.2	162.9	132.7	-0.068	-0.080	-0.145	0.177	0.182	-0.104	159.4	160.0	133.0	185.4	168.1	151.6	0.85	0.84	0.97	0.88	0.97	0.88	0.304873	1.000000	-
Rv2673	-	26	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2674	-	6	265.8	237.2	268.3	237.6	290.8	242.5	0.048	-0.113	0.061	-0.111	0.175	-0.082	265.8	237.2	268.3	237.6	290.8	264.5	1.00	1.00	1.00	1.00	1.00	0.92	0.824637	1.000000	-
Rv2675c	-	14	251.0	223.0	235.1	231.3	241.0	261.3	0.061	-0.106	-0.032	-0.055	0.003	0.118	285.0	249.8	253.2	249.1	259.5	271.0	0.88	0.89	0.93	0.93	0.93	0.96	0.994029	1.000000	-
Rv2676c	-	12	1.6	0.8	1.8	193.4	207.7	22.8	-3.533	-3.711	-3.486	1.378	1.478	-1.455	14.4	19.9	21.8	193.4	207.7	28.9	0.11	0.04	0.08	1.00	1.00	0.79	0.000000	0.000000	-
Rv2677c	hemY	11	3.3	0.5	1.1	276.4	211.7	25.5	-3.469	-4.067	-3.895	1.622	1.245	-1.585	17.9	10.0	12.6	276.4	211.7	31.1	0.18	0.05	0.09	1.00	1.00	0.82	0.000000	0.000000	-
Rv2678c	hemE	13	1.7	0.0	1.2	123.0	127.1	0.4	-2.814	-3.240	-2.931	1.438	1.484	-3.139	16.8	0.0	31.0	145.4	150.2	9.4	0.10	0.00	0.04	0.85	0.85	0.04	0.000000	0.000000	-
Rv2679	echA15	4	160.4	222.9	207.9	153.7	164.9	222.3	-0.228	0.235	0.137	-0.288	-0.189	0.231	160.4	222.9	207.9	153.7	164.9	222.3	1.00	1.00	1.00	1.00	1.00	1.00	0.143638	0.925875	-
Rv2680	-	10	89.1	103.6	79.0	80.1	82.7	84.4	0.041	0.248	-0.124	-0.105	-0.060	-0.033	92.2	103.6	79.0	80.1	82.7	84.4	0.97	1.00	1.00	1.00	1.00	1.00	0.863439	1.000000	-
Rv2681	-	19	135.6	132.4	147.8	130.2	135.2	141.6	-0.015	-0.049	0.105	-0.072	-0.020	0.044	164.5	167.7	156.0	168.6	160.5	163.0	0.82	0.79	0.95	0.77	0.84	0.87	0.556172	1.000000	-
Rv2682c	dxs1	22	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2683	-	10	245.6	195.5	220.6	165.4	166.6	164.5	0.339	0.018	0.188	-0.217	-0.207	-0.224	254.0	195.5	232.2	183.8	185.1	182.8	0.97	1.00	0.95	0.90	0.90	0.90	0.550073	1.000000	-
Rv2684	arsA	17	206.2	133.9	206.7	86.4	99.0	115.0	0.531	-0.074	0.534	-0.677	-0.492	-0.285	206.2	133.9	206.7	88.2	99.0	115.0	1.00	1.00	1.00	0.98	1.00	1.00	0.000000	0.000006	-
Rv2685	arsB1	9	143.1	122.0	152.2	126.1	146.0	116.4	0.088	-0.134	0.174	-0.087	0.116	-0.199	143.1	122.0	161.1	141.9	146.0	116.4	1.00	1.00	0.94	0.89	1.00	1.00	0.354752	1.000000	-
Rv2686c	-	12	122.6	100.1	116.6	113.5	128.8	89.0	0.128	-0.151	0.058	0.021	0.196	-0.313	129.8	114.4	147.2	131.8	128.8	106.8	0.94	0.88	0.79	0.86	1.00	0.83	0.328090	1.000000	-
Rv2687c	-	11	98.9	109.7	91.6	92.1	89.7	97.9	0.032	0.174	-0.074	-0.066	-0.101	0.017	112.5	109.7	106.0	101.3	98.7	119.6	0.88	1.00	0.86	0.91	0.91	0.82	0.698735	1.000000	-
Rv2688c	-	11	101.6	89.7	95.6	90.9	93.2	115.4	0.053	-0.117	-0.031	-0.099	-0.065	0.229	119.7	94.0	105.1	100.0	102.5	126.9	0.85	0.95	0.91	0.91	0.91	0.91	0.936722	1.000000	-
Rv2689c	-	21	283.3	218.9	282.7	280.3	263.1	239.0	0.115	-0.250	0.112	0.100	0.010	-0.126	313.1	235.7	339.3	315.4	298.6	286.7	0.90	0.93	0.83	0.89	0.88	0.83	0.772795	1.000000	-
Rv2690c	-	31	19.1	21.5	14.9	22.0	30.5	20.2	-0.131	0.005	-0.404	0.036	0.430	-0.067	31.1	27.2	33.1	33.6	37.9	27.8	0.61	0.79	0.45	0.66	0.81	0.73	0.000362	0.008123	-
Rv2691	ceoB	14	90.8	136.8	122.5	107.7	112.1	134.2	-0.353	0.213	0.060	-0.119	-0.063	0.186	105.9	159.6	137.2	119.0	120.8	139.2	0.86	0.86	0.89	0.90	0.93	0.96	0.552121	1.000000	-
Rv2692	ceoC	2	57.2	91.4	112.7	79.3	73.2	85.0	-0.504	0.130	0.417	-0.064	-0.173	0.031	57.2	91.4	112.7	79.3	73.2	85.0	1.00	1.00	1.00	1.00	1.00	1.00	0.796537	1.000000	-
Rv2693c	-	10	307.3	283.2	307.3	234.3	289.0	304.8	0.094	-0.022	0.094	-0.291	0.007	0.082	307.3	283.2	323.5	260.3	289.0	304.8	1.00	1.00	0.95	0.90	1.00	1.00	0.497169	1.000000	-
Rv2694c	-	6	209.7	256.4	188.1	192.7	226.4	241.6	-0.062	0.222	-0.215	-0.181	0.046	0.138	251.7	307.7	225.7	231.2	246.9	289.9	0.83	0.83	0.83	0.83	0.92	0.83	0.979731	1.000000	-
Rv2695	-	10	299.3	311.7	308.4	332.2	317.1	304.9	-0.060	-0.003	-0.018	0.088	0.022	-0.034	299.3	311.7	324.6	343.7	317.1	304.9	1.00	1.00	0.95	0.97	1.00	1.00	0.915388	1.000000	-
Rv2696c	-	9	210.5	228.1	159.5	187.0	212.9	208.6	0.064	0.178	-0.325	-0.102	0.080	0.052	270.6	373.3	205.1	265.8	239.5	313.0	0.78	0.61	0.78	0.70	0.89	0.67	0.371812	1.000000	-
Rv2697c	dut	5	3.7	2.0	15.6	0.0	0.0	2.2	-0.031	-0.342	1.207	-0.836	-0.836	-0.316	14.0	10.2	22.3	0.0	0.0	21.7	0.27	0.20	0.70	0.00	0.00	0.10	0.000489	0.010555	-
Rv2698	-	12	4.7	10.9	5.4	1.2	2.3	6.4	-0.065	0.648	0.041	-0.718	-0.470	0.161	17.0	21.8	21.8	14.1	18.6	15.2	0.28	0.50	0.25	0.08	0.12	0.42	0.010437	0.143602	-
Rv2699c	-	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2700	-	7	29.7	70.2	60.6	71.5	94.8	50.1	-0.968	0.150	-0.048	0.173	0.558	-0.300	44.5	122.9	84.9	100.1	147.5	63.7	0.67	0.57	0.71	0.71	0.64	0.79	0.003300	0.056517	-
Rv2701c	suhB	9	310.3	215.5	245.3	244.4	199.9	219.9	0.369	-0.147	0.035	0.030	-0.253	-0.119	322.2	215.5	259.7	244.4	224.9	247.4	0.96	1.00	0.94	1.00	0.89	0.89	0.602468	1.000000	-
Rv2702	ppgK	13	12.7	17.9	18.5	28.1	30.6	18.4	-0.559	-0.183	-0.146	0.345	0.453	-0.155	30.9	27.4	34.4	43.8	36.2	31.9	0.41	0.65	0.54	0.64	0.85	0.58	0.102423	0.747564	-
Rv2703	sigA	18	0.2	0.0	0.0	0.0	0.0	0.0	0.050	-0.010	-0.010	-0.010	-0.010	-0.010	11.6	0.0	0.0	0.0	0.0	0.0	0.02	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2704	-	10	483.1	385.1	399.3	426.1	392.8	326.2	0.262	-0.062	-0.010	0.083	-0.033	-0.298	517.6	385.1	420.3	426.1	413.5	343.4	0.93	1.00	0.95	1.00	0.95	0.95	0.875856	1.000000	-
Rv2705c	-	9	145.1	146.9	132.9	145.4	163.2	187.4	-0.078	-0.061	-0.201	-0.075	0.085	0.280	145.1	146.9	132.9	145.4	163.2	187.4	1.00	1.00	1.00	1.00	1.00	1.00	0.801388	1.000000	-
Rv2706c	-	2	212.0	183.4	195.0	186.9	153.0	241.0	0.116	-0.087	-0.002	-0.062	-0.342	0.297	212.0	183.4	195.0	186.9	153.0	241.0	1.00	1.00	1.00	1.00	1.00	1.00	0.970144	1.000000	-
Rv2707	-	27	181.6	175.0	190.1	109.3	131.4	162.2	0.193	0.141	0.257	-0.515	-0.259	0.034	191.0	175.0	197.4	116.4	139.1	162.2	0.95	1.00	0.96	0.94	0.94	1.00	0.001707	0.031831	-
Rv2708c	-	6	139.8	138.2	126.2	156.6	165.1	183.5	-0.112	-0.129	-0.255	0.045	0.120	0.268	193.6	184.2	189.3	156.6	165.1	220.2	0.72	0.75	0.67	1.00	1.00	0.83	0.136245	0.900720	-
Rv2709	-	9	217.7	207.1	186.3	207.5	190.3	205.0	0.103	0.033	-0.116	0.036	-0.086	0.019	226.1	232.9	209.6	233.4	201.5	230.6	0.96	0.89	0.89	0.89	0.94	0.89	0.987934	1.000000	-
Rv2710	sigB	11	126.0	122.6	127.6	55.7	67.7	114.3	0.287	0.250	0.306	-0.822	-0.562	0.153	126.0	122.6	133.7	57.4	67.7	114.3	1.00	1.00	0.95	0.97	1.00	1.00	0.000050	0.001370	-
Rv2711	ideR	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2712c	-	13	275.6	260.0	234.2	282.9	216.9	205.7	0.162	0.079	-0.069	0.198	-0.177	-0.252	325.7	307.3	264.7	344.7	235.0	222.8	0.85	0.85	0.88	0.82	0.92	0.92	0.820343	1.000000	-
Rv2713	sthA	21	105.7	104.7	110.1	99.4	96.3	116.4	0.003	-0.010	0.059	-0.081	-0.125	0.137	123.3	109.9	125.0	104.4	106.4	122.3	0.86	0.95	0.88	0.95	0.90	0.95	0.786855	1.000000	-
Rv2714	-	15	96.4	102.0	98.9	82.3	91.6	109.8	-0.007	0.071	0.030	-0.222	-0.076	0.173	114.1	109.2	114.2	88.2	98.1	117.6	0.84	0.93	0.87	0.93	0.93	0.93	0.919781	1.000000	-
Rv2715	-	16	65.9	65.2	79.0	66.4	71.8	69.4	-0.073	-0.088	0.170	-0.063	0.042	-0.005	83.3	72.0	81.5	81.8	82.1	74.0	0.79	0.91	0.97	0.81	0.88	0.94	0.486575	1.000000	-
Rv2716	-	10	130.3	119.0	132.1	136.4	136.8	136.9	-0.017	-0.143	0.001	0.046	0.051	0.052	177.7	148.8	188.7	170.5	161.0	195.6	0.73	0.80	0.70	0.80	0.85	0.70	0.985205	1.000000	-
Rv2717c	-	10	89.9	94.6	82.5	86.4	91.2	93.4	0.004	0.073	-0.113	-0.051	0.022	0.056	96.4	94.6	103.1	89.4	91.2	93.4	0.93	1.00	0.80	0.97	1.00	1.00	0.373439	1.000000	-
Rv2718c	-	7	198.0	192.8	210.0	193.3	212.7	223.0	-0.048	-0.086	0.034	-0.083	0.052	0.119	231.0	224.9	245.0	202.9	248.2	260.2	0.86	0.86	0.86	0.95	0.86	0.86	0.989294	1.000000	-
Rv2719c	-	4	197.6	102.0	159.4	119.6	118.2	101.5	0.554	-0.368	0.252	-0.148	-0.164	-0.375	215.6	102.0	159.4	119.6	118.2	101.5	0.92	1.00	1.00	1.00	1.00	1.00	0.823829	1.000000	-
Rv2720	lexA	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2721c	-	23	75.6	85.7	83.4	86.5	87.1	107.9	-0.201	-0.031	-0.069	-0.020	-0.010	0.285	96.7	93.9	93.6	94.7	97.7	115.5	0.78	0.91	0.89	0.91	0.89	0.93	0.462318	1.000000	-
Rv2722	-	6	6.3	10.3	8.3	8.4	7.1	11.8	-0.281	0.161	-0.041	-0.033	-0.182	0.296	22.6	20.6	20.0	25.2	21.2	23.6	0.28	0.50	0.42	0.33	0.33	0.50	0.976376	1.000000	-
Rv2723	-	27	83.1	89.3	100.1	110.5	100.9	102.8	-0.222	-0.125	0.032	0.169	0.043	0.069	108.6	109.6	138.6	129.8	123.9	106.8	0.77	0.81	0.72	0.85	0.81	0.96	0.113781	0.795442	-
Rv2724c	fadE20	23	128.7	123.3	133.2	126.8	127.9	149.4	-0.031	-0.089	0.017	-0.051	-0.039	0.177	132.5	132.0	145.8	138.9	130.8	149.4	0.97	0.93	0.91	0.91	0.98	1.00	0.364780	1.000000	-
Rv2725c	hflX	17	194.0	186.8	204.6	184.6	180.4	188.3	0.031	-0.022	0.106	-0.039	-0.071	-0.011	194.0	211.7	217.4	188.3	191.7	213.4	1.00	0.88	0.94	0.98	0.94	0.88	0.125724	0.843132	-
Rv2726c	dapF	10	0.0	0.0	0.0	0.0	0.7	0.9	-0.078	-0.078	-0.078	-0.078	0.117	0.171	0.0	0.0	0.0	0.0	14.5	18.8	0.00	0.00	0.00	0.00	0.05	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2727c	miaA	12	18.9	25.2	21.3	8.2	9.1	27.3	0.036	0.370	0.173	-0.820	-0.728	0.470	31.0	31.8	36.5	18.5	19.8	32.8	0.61	0.79	0.58	0.44	0.46	0.83	0.001038	0.020916	-
Rv2728c	-	10	142.2	145.7	176.8	162.1	154.1	153.6	-0.127	-0.093	0.178	0.056	-0.015	-0.020	152.4	145.7	208.1	167.7	171.2	153.6	0.93	1.00	0.85	0.97	0.90	1.00	0.551469	1.000000	-
Rv2729c	-	11	222.4	285.8	264.8	251.9	247.5	278.1	-0.212	0.143	0.035	-0.036	-0.061	0.104	244.7	314.4	306.6	277.1	272.3	291.3	0.91	0.91	0.86	0.91	0.91	0.95	0.981703	1.000000	-
Rv2730	-	11	139.7	187.5	177.6	177.6	160.7	212.8	-0.323	0.089	0.013	0.013	-0.127	0.267	148.7	187.5	177.6	177.6	160.7	212.8	0.94	1.00	1.00	1.00	1.00	1.00	0.314087	1.000000	-
Rv2731	-	8	133.5	94.6	138.5	130.8	117.9	143.3	0.076	-0.399	0.127	0.047	-0.097	0.174	133.5	94.6	138.5	130.8	117.9	143.3	1.00	1.00	1.00	1.00	1.00	1.00	0.627510	1.000000	-
Rv2732c	-	6	156.4	183.8	155.4	145.6	168.8	188.3	-0.086	0.139	-0.095	-0.187	0.020	0.174	201.1	275.6	186.5	218.3	168.8	282.5	0.78	0.67	0.83	0.67	1.00	0.67	0.262110	1.000000	-
Rv2733c	-	16	261.3	248.9	194.4	190.0	176.3	220.4	0.274	0.205	-0.143	-0.176	-0.280	0.033	285.0	265.5	214.5	194.0	188.1	235.1	0.92	0.94	0.91	0.98	0.94	0.94	0.646795	1.000000	-
Rv2734	-	21	33.6	38.1	30.2	37.4	46.3	34.0	-0.108	0.052	-0.239	0.027	0.301	-0.094	58.8	55.2	48.8	60.4	67.0	44.6	0.57	0.69	0.62	0.62	0.69	0.76	0.640963	1.000000	-
Rv2735c	-	28	99.3	107.6	113.0	103.3	111.4	110.4	-0.110	0.001	0.069	-0.054	0.049	0.037	126.3	120.5	129.1	129.5	127.3	118.9	0.79	0.89	0.88	0.80	0.88	0.93	0.708116	1.000000	-
Rv2736c	recX	6	96.9	80.7	103.3	136.0	98.6	73.5	-0.017	-0.268	0.070	0.451	0.006	-0.395	109.1	107.6	112.7	136.0	98.6	97.9	0.89	0.75	0.92	1.00	1.00	0.75	0.192448	1.000000	-
Rv2737c	recA	28	192.4	218.0	199.4	198.0	195.2	204.9	-0.064	0.112	-0.014	-0.023	-0.043	0.025	204.6	226.1	214.7	205.3	202.4	208.6	0.94	0.96	0.93	0.96	0.96	0.98	0.982247	1.000000	-
Rv2737A	-	3	26.6	35.6	39.8	51.7	67.4	52.5	-0.679	-0.316	-0.176	0.164	0.517	0.183	34.2	53.5	59.7	51.7	67.4	78.7	0.78	0.67	0.67	1.00	1.00	0.67	0.102324	0.747564	-
Rv2738c	-	3	188.2	179.0	223.6	221.4	254.8	165.7	-0.124	-0.194	0.120	0.106	0.304	-0.302	188.2	179.0	223.6	221.4	382.1	331.5	1.00	1.00	1.00	1.00	0.67	0.50	0.054738	0.503491	-
Rv2739c	-	5	79.0	77.2	106.1	72.4	81.6	104.8	-0.128	-0.160	0.274	-0.247	-0.086	0.257	91.2	85.8	132.6	98.8	90.6	149.7	0.87	0.90	0.80	0.73	0.90	0.70	0.845470	1.000000	-
Rv2740	-	5	260.3	236.3	260.6	272.3	229.5	314.8	-0.011	-0.148	-0.009	0.053	-0.189	0.259	260.3	236.3	260.6	272.3	229.5	314.8	1.00	1.00	1.00	1.00	1.00	1.00	0.913178	1.000000	-
Rv2741	PE_PGRS47	22	210.2	184.9	225.1	202.2	200.0	188.9	0.057	-0.124	0.153	0.002	-0.013	-0.094	247.8	203.4	247.6	234.2	231.6	207.8	0.85	0.91	0.91	0.86	0.86	0.91	0.990454	1.000000	-
Rv2742c	-	15	255.6	238.1	224.0	230.4	230.3	202.8	0.148	0.048	-0.039	0.001	0.001	-0.179	255.6	238.1	224.0	230.4	230.3	202.8	1.00	1.00	1.00	1.00	1.00	1.00	0.833778	1.000000	-
Rv2743c	-	12	288.7	267.9	222.6	278.6	277.8	219.5	0.153	0.047	-0.215	0.102	0.098	-0.235	305.6	292.2	232.3	313.5	303.0	263.4	0.94	0.92	0.96	0.89	0.92	0.83	0.798074	1.000000	-
Rv2744c	35kd_ag	5	127.4	125.5	138.0	123.4	163.8	128.1	-0.074	-0.095	0.037	-0.118	0.276	-0.066	147.0	139.4	172.5	185.1	182.0	160.1	0.87	0.90	0.80	0.67	0.90	0.80	0.944378	1.000000	-
Rv2745c	-	2	341.5	280.7	326.0	411.1	397.4	392.9	-0.068	-0.347	-0.134	0.196	0.148	0.131	341.5	280.7	326.0	411.1	397.4	392.9	1.00	1.00	1.00	1.00	1.00	1.00	0.960622	1.000000	-
Rv2746c	pgsA3	13	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2747	-	7	20.7	36.3	15.2	57.5	49.0	36.2	-0.669	0.019	-1.017	0.615	0.404	0.014	31.0	46.2	35.4	67.0	49.0	42.2	0.67	0.79	0.43	0.86	1.00	0.86	0.003773	0.062447	-
Rv2748c	ftsK	27	4.0	4.3	3.5	4.7	5.2	5.6	-0.079	-0.033	-0.176	0.023	0.096	0.145	32.8	39.1	37.4	42.4	35.2	43.0	0.12	0.11	0.09	0.11	0.15	0.13	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2749	-	3	234.0	182.1	241.8	210.6	220.1	180.3	0.143	-0.210	0.189	-0.006	0.056	-0.224	234.0	182.1	241.8	210.6	220.1	180.3	1.00	1.00	1.00	1.00	1.00	1.00	0.978495	1.000000	-
Rv2750	-	12	51.3	40.3	59.7	53.2	55.5	62.7	-0.063	-0.377	0.138	-0.014	0.042	0.205	73.8	56.8	79.6	73.7	74.0	79.3	0.69	0.71	0.75	0.72	0.75	0.79	0.991193	1.000000	-
Rv2751	-	21	49.2	42.3	53.6	52.4	47.1	44.7	0.027	-0.171	0.140	0.109	-0.029	-0.100	72.1	46.7	70.4	62.3	58.2	50.7	0.68	0.90	0.76	0.84	0.81	0.88	0.164996	0.996469	-
Rv2752c	-	17	50.8	33.0	39.9	36.3	33.4	42.7	0.332	-0.224	0.018	-0.101	-0.209	0.105	72.0	48.7	56.5	50.1	54.0	63.1	0.71	0.68	0.71	0.73	0.62	0.68	0.520499	1.000000	-
Rv2753c	dapA	9	0.0	0.0	0.0	0.0	0.0	0.6	-0.029	-0.029	-0.029	-0.029	-0.029	0.135	0.0	0.0	0.0	0.0	0.0	10.8	0.00	0.00	0.00	0.00	0.00	0.06	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2754c	thyX	9	44.4	39.7	66.0	103.4	128.9	44.0	-0.622	-0.766	-0.100	0.511	0.816	-0.635	52.2	42.1	66.0	103.4	136.5	46.6	0.85	0.94	1.00	1.00	0.94	0.94	0.000000	0.000002	-
Rv2755c	hsdS.1	7	9.6	11.7	8.9	9.2	11.7	14.1	-0.118	0.069	-0.189	-0.163	0.076	0.269	22.5	16.3	20.8	16.1	18.3	15.2	0.43	0.71	0.43	0.57	0.64	0.93	0.158031	0.974567	-
Rv2756c	hsdM	36	86.3	72.6	82.0	68.4	56.7	72.0	0.228	-0.007	0.158	-0.088	-0.338	-0.019	108.4	81.7	101.8	83.0	72.9	81.0	0.80	0.89	0.81	0.82	0.78	0.89	0.335218	1.000000	-
Rv2757c	-	7	54.9	72.9	94.4	32.4	28.4	22.7	0.097	0.478	0.830	-0.582	-0.746	-1.012	72.0	113.4	110.2	45.3	44.1	39.8	0.76	0.64	0.86	0.71	0.64	0.57	0.006838	0.101798	-
Rv2758c	-	4	31.5	52.2	39.1	52.7	49.0	34.1	-0.399	0.251	-0.124	0.262	0.166	-0.300	37.8	69.7	52.2	52.7	49.0	38.9	0.83	0.75	0.75	1.00	1.00	0.88	0.330895	1.000000	-
Rv2759c	-	7	147.2	120.7	113.5	115.8	134.6	138.1	0.191	-0.085	-0.170	-0.142	0.066	0.103	162.7	120.7	122.2	115.8	134.6	138.1	0.90	1.00	0.93	1.00	1.00	1.00	0.766753	1.000000	-
Rv2760c	-	1	417.6	349.9	297.0	418.4	459.1	370.2	0.114	-0.137	-0.370	0.117	0.250	-0.057	417.6	349.9	297.0	418.4	459.1	370.2	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2761c	hsdS	21	102.0	93.0	119.9	112.9	101.1	104.7	-0.048	-0.175	0.175	0.092	-0.059	-0.011	128.5	111.6	132.5	134.2	114.8	122.2	0.79	0.83	0.90	0.84	0.88	0.86	0.954420	1.000000	-
Rv2762c	-	4	174.9	153.1	154.5	173.2	138.8	175.9	0.110	-0.077	-0.064	0.096	-0.214	0.118	174.9	153.1	154.5	173.2	138.8	175.9	1.00	1.00	1.00	1.00	1.00	1.00	0.886633	1.000000	-
Rv2763c	dfrA	7	0.0	1.4	0.0	0.0	0.0	0.0	-0.067	0.294	-0.067	-0.067	-0.067	-0.067	0.0	19.9	0.0	0.0	0.0	0.0	0.00	0.07	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2764c	thyA	19	1.1	2.7	0.0	0.0	0.0	1.3	0.055	0.393	-0.227	-0.227	-0.227	0.117	20.5	11.3	0.0	0.0	0.0	10.2	0.05	0.24	0.00	0.00	0.00	0.13	0.000011	0.000351	-
Rv2765	-	13	99.1	95.9	79.3	83.8	89.0	112.5	0.083	0.038	-0.221	-0.145	-0.064	0.257	107.4	108.4	85.9	102.2	89.0	121.8	0.92	0.88	0.92	0.82	1.00	0.92	0.271774	1.000000	-
Rv2766c	fabG	5	344.9	354.9	299.9	396.5	373.5	302.8	-0.002	0.039	-0.201	0.196	0.111	-0.187	344.9	354.9	299.9	396.5	373.5	302.8	1.00	1.00	1.00	1.00	1.00	1.00	0.824700	1.000000	-
Rv2767c	-	9	30.3	29.9	43.3	40.8	37.6	40.1	-0.249	-0.268	0.202	0.125	0.019	0.103	45.5	35.9	60.0	50.1	45.1	51.6	0.67	0.83	0.72	0.81	0.83	0.78	0.890019	1.000000	-
Rv2768c	PPE43	14	58.9	58.9	55.3	67.6	55.6	78.0	-0.076	-0.077	-0.159	0.108	-0.154	0.300	75.0	71.7	70.4	83.5	67.6	91.0	0.79	0.82	0.79	0.81	0.82	0.86	0.991933	1.000000	-
Rv2769c	PE27	15	122.6	124.6	130.3	114.5	124.1	137.3	-0.033	-0.011	0.051	-0.128	-0.016	0.124	131.4	143.8	139.6	132.1	133.0	152.6	0.93	0.87	0.93	0.87	0.93	0.90	0.937251	1.000000	-
Rv2770c	PPE44	12	257.7	233.0	254.2	257.2	238.5	240.5	0.061	-0.082	0.042	0.058	-0.049	-0.037	299.3	233.0	277.3	308.7	260.2	288.6	0.86	1.00	0.92	0.83	0.92	0.83	0.478000	1.000000	-
Rv2771c	-	8	198.6	176.7	213.1	199.2	189.7	214.8	-0.001	-0.165	0.099	0.004	-0.065	0.110	216.6	235.6	243.6	227.6	202.4	214.8	0.92	0.75	0.88	0.88	0.94	1.00	0.721889	1.000000	-
Rv2772c	-	9	216.0	251.0	212.9	238.9	254.1	194.9	-0.076	0.136	-0.097	0.066	0.153	-0.221	216.0	251.0	212.9	238.9	269.1	194.9	1.00	1.00	1.00	1.00	0.94	1.00	0.665991	1.000000	-
Rv2773c	dapB	9	9.4	12.4	7.6	13.7	11.5	13.2	-0.180	0.091	-0.367	0.200	0.018	0.158	23.1	22.3	27.5	30.9	20.8	19.8	0.41	0.56	0.28	0.44	0.56	0.67	0.606626	1.000000	-
Rv2774c	-	3	98.1	86.9	82.2	73.3	66.8	84.1	0.247	0.080	0.005	-0.151	-0.276	0.036	98.1	86.9	98.6	73.3	66.8	84.1	1.00	1.00	0.83	1.00	1.00	1.00	0.926377	1.000000	-
Rv2775	-	10	51.0	54.8	45.9	53.9	54.5	65.2	-0.080	0.014	-0.219	-0.009	0.008	0.245	69.6	60.9	61.2	70.3	64.2	76.7	0.73	0.90	0.75	0.77	0.85	0.85	0.963768	1.000000	-
Rv2776c	-	13	107.9	110.1	89.5	96.3	115.4	105.1	0.050	0.078	-0.207	-0.106	0.143	0.014	123.8	119.2	105.8	110.5	125.0	124.2	0.87	0.92	0.85	0.87	0.92	0.85	0.972447	1.000000	-
Rv2777c	-	20	118.5	115.6	110.1	120.2	123.9	142.8	-0.039	-0.073	-0.140	-0.019	0.024	0.221	124.7	128.4	125.8	126.5	137.7	154.4	0.95	0.90	0.88	0.95	0.90	0.93	0.423161	1.000000	-
Rv2778c	-	9	120.1	162.1	109.9	158.8	127.3	167.6	-0.223	0.195	-0.345	0.167	-0.142	0.242	124.7	182.3	123.7	204.2	163.7	188.6	0.96	0.89	0.89	0.78	0.78	0.89	0.040143	0.409372	-
Rv2779c	-	6	61.5	70.5	76.0	70.0	64.1	65.7	-0.134	0.049	0.150	0.041	-0.079	-0.045	110.7	140.9	182.4	140.1	128.1	131.5	0.56	0.50	0.42	0.50	0.50	0.50	0.960241	1.000000	-
Rv2780	ald	24	95.7	97.7	100.1	89.2	79.1	107.5	0.012	0.040	0.074	-0.085	-0.248	0.172	109.4	106.5	111.7	100.3	92.6	120.0	0.88	0.92	0.90	0.89	0.85	0.90	0.936605	1.000000	-
Rv2781c	-	18	159.4	175.2	228.2	196.7	176.5	219.6	-0.265	-0.133	0.239	0.030	-0.122	0.185	200.2	225.2	256.7	212.4	186.9	225.8	0.80	0.78	0.89	0.93	0.94	0.97	0.181116	1.000000	-
Rv2782c	pepR	12	117.9	120.0	104.2	104.0	113.3	112.6	0.071	0.096	-0.099	-0.102	0.016	0.007	157.2	130.9	119.1	117.0	129.5	128.7	0.75	0.92	0.88	0.89	0.88	0.88	0.891959	1.000000	-
Rv2783c	gpsI	18	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2784c	lppU	6	73.9	90.2	90.7	81.6	82.1	101.7	-0.217	0.054	0.061	-0.083	-0.074	0.219	78.3	90.2	98.9	86.4	89.6	111.0	0.94	1.00	0.92	0.94	0.92	0.92	0.979702	1.000000	-
Rv2785c	rpsO	4	48.1	21.7	13.3	31.8	21.9	25.3	0.729	-0.263	-0.804	0.201	-0.252	-0.079	115.4	43.4	35.6	63.6	43.8	50.7	0.42	0.50	0.38	0.50	0.50	0.50	0.651994	1.000000	-
Rv2786c	ribF	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2787	-	21	134.5	137.1	140.0	139.2	143.2	150.1	-0.062	-0.036	-0.007	-0.015	0.025	0.090	148.7	151.5	154.7	153.8	154.3	150.1	0.90	0.90	0.90	0.90	0.93	1.00	0.716434	1.000000	-
Rv2788	sirR	6	77.6	89.3	92.5	112.8	71.2	95.9	-0.201	-0.008	0.039	0.312	-0.316	0.089	82.1	89.3	111.0	119.4	77.7	95.9	0.94	1.00	0.83	0.94	0.92	1.00	0.436337	1.000000	-
Rv2789c	fadE21	14	31.2	38.1	31.0	25.8	35.4	31.7	-0.038	0.213	-0.047	-0.274	0.118	-0.021	54.7	50.8	51.1	40.1	45.0	42.2	0.57	0.75	0.61	0.64	0.79	0.75	0.868428	1.000000	-
Rv2790c	ltp1	20	63.8	63.8	86.9	80.4	71.9	69.0	-0.175	-0.174	0.244	0.137	-0.013	-0.070	109.3	79.8	102.2	96.4	95.9	83.6	0.58	0.80	0.85	0.83	0.75	0.82	0.161455	0.987163	-
Rv2791c	-	17	95.1	83.8	128.3	99.5	101.2	83.7	-0.049	-0.223	0.363	0.013	0.036	-0.224	134.7	105.5	167.7	133.5	132.3	94.8	0.71	0.79	0.76	0.75	0.76	0.88	0.676869	1.000000	-
Rv2792c	-	6	100.6	99.8	90.0	77.2	133.0	118.5	-0.035	-0.046	-0.187	-0.397	0.351	0.191	100.6	108.9	98.2	86.8	145.1	129.3	1.00	0.92	0.92	0.89	0.92	0.92	0.356346	1.000000	-
Rv2793c	truB	8	96.7	89.8	134.0	112.3	61.2	84.5	0.004	-0.098	0.454	0.210	-0.615	-0.180	136.5	159.6	194.9	245.1	97.9	112.7	0.71	0.56	0.69	0.46	0.62	0.75	0.363765	1.000000	-
Rv2794c	-	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2795c	-	16	33.3	27.6	32.2	31.8	37.0	37.6	0.001	-0.228	-0.041	-0.056	0.135	0.156	51.5	49.2	54.2	46.2	53.8	60.2	0.65	0.56	0.59	0.69	0.69	0.62	0.910279	1.000000	-
Rv2796c	lppV	5	51.7	30.5	56.6	50.6	53.5	42.4	0.109	-0.564	0.230	0.082	0.153	-0.149	59.6	38.2	70.8	63.3	59.4	47.1	0.87	0.80	0.80	0.80	0.90	0.90	0.861420	1.000000	-
Rv2797c	-	22	300.9	273.1	262.2	269.1	258.6	260.2	0.150	0.013	-0.045	-0.008	-0.065	-0.056	315.2	273.1	274.7	286.4	258.6	266.2	0.95	1.00	0.95	0.94	1.00	0.98	0.702067	1.000000	-
Rv2798c	-	3	167.2	193.6	243.9	208.5	143.4	183.3	-0.180	0.026	0.352	0.131	-0.394	-0.050	167.2	290.4	243.9	234.6	215.1	183.3	1.00	0.67	1.00	0.89	0.67	1.00	0.223204	1.000000	-
Rv2799	-	10	199.9	282.9	198.6	419.5	397.6	238.5	-0.523	-0.033	-0.533	0.528	0.451	-0.274	214.2	282.9	198.6	419.5	397.6	251.1	0.93	1.00	1.00	1.00	1.00	0.95	0.017688	0.214511	-
Rv2800	-	17	167.7	214.9	212.3	186.8	174.0	191.6	-0.184	0.164	0.148	-0.033	-0.132	0.003	182.0	221.4	212.3	198.5	184.9	197.4	0.92	0.97	1.00	0.94	0.94	0.97	0.734822	1.000000	-
Rv2801c	-	4	149.3	164.4	212.2	173.0	160.4	199.5	-0.234	-0.099	0.260	-0.028	-0.134	0.172	149.3	164.4	212.2	173.0	160.4	199.5	1.00	1.00	1.00	1.00	1.00	1.00	0.817739	1.000000	-
Rv2802c	-	8	289.6	357.3	238.9	286.4	264.6	297.9	0.002	0.301	-0.270	-0.014	-0.126	0.042	289.6	357.3	238.9	286.4	264.6	297.9	1.00	1.00	1.00	1.00	1.00	1.00	0.749641	1.000000	-
Rv2803	-	6	429.8	383.1	450.1	357.8	366.3	430.7	0.092	-0.072	0.158	-0.169	-0.136	0.095	429.8	383.1	450.1	357.8	366.3	430.7	1.00	1.00	1.00	1.00	1.00	1.00	0.399379	1.000000	-
Rv2804c	-	6	120.2	129.9	160.0	166.5	127.4	125.1	-0.193	-0.086	0.205	0.260	-0.113	-0.139	120.2	129.9	160.0	166.5	127.4	125.1	1.00	1.00	1.00	1.00	1.00	1.00	0.893619	1.000000	-
Rv2805	-	3	162.3	205.1	221.2	236.8	218.4	236.4	-0.385	-0.056	0.051	0.147	0.033	0.145	162.3	205.1	221.2	236.8	218.4	236.4	1.00	1.00	1.00	1.00	1.00	1.00	0.828862	1.000000	-
Rv2806	-	7	266.4	187.2	191.0	190.4	197.4	215.6	0.350	-0.148	-0.120	-0.125	-0.074	0.050	310.9	218.4	222.9	266.5	230.3	251.5	0.86	0.86	0.86	0.71	0.86	0.86	0.955212	1.000000	-
Rv2807	-	11	86.0	93.3	90.8	94.5	91.2	91.0	-0.079	0.032	-0.005	0.050	0.001	-0.002	101.3	97.7	111.0	103.9	95.5	91.0	0.85	0.95	0.82	0.91	0.95	1.00	0.714833	1.000000	-
Rv2808	-	7	63.1	47.2	42.4	50.2	54.8	47.4	0.285	-0.097	-0.235	-0.017	0.098	-0.092	77.9	47.2	49.5	50.2	54.8	51.0	0.81	1.00	0.86	1.00	1.00	0.93	0.082228	0.666852	-
Rv2809	-	7	57.1	66.5	55.4	43.4	37.0	72.6	0.043	0.245	0.001	-0.317	-0.523	0.363	92.3	93.1	96.9	60.8	57.5	101.6	0.62	0.71	0.57	0.71	0.64	0.71	0.788874	1.000000	-
Rv2810c	-	12	123.8	123.6	127.0	141.4	131.1	123.5	-0.051	-0.053	-0.015	0.134	0.029	-0.054	135.1	134.8	132.5	175.5	143.0	141.2	0.92	0.92	0.96	0.81	0.92	0.88	0.711835	1.000000	-
Rv2811	-	2	101.1	53.7	54.5	34.2	37.9	35.1	0.878	0.024	0.043	-0.558	-0.430	-0.526	101.1	107.4	108.9	68.4	75.7	70.2	1.00	0.50	0.50	0.50	0.50	0.50	0.480638	1.000000	-
Rv2812	-	18	75.6	77.9	87.3	58.4	42.6	55.4	0.178	0.219	0.375	-0.167	-0.580	-0.237	90.7	116.8	108.4	90.1	61.4	73.9	0.83	0.67	0.81	0.65	0.69	0.75	0.096314	0.726450	-
Rv2813	-	9	36.9	45.4	63.2	57.3	56.0	55.5	-0.452	-0.188	0.249	0.118	0.089	0.076	62.3	68.1	103.5	103.1	77.6	83.2	0.59	0.67	0.61	0.56	0.72	0.67	0.730576	1.000000	-
Rv2814c	-	21	288.9	291.6	331.4	315.5	285.0	290.4	-0.056	-0.042	0.139	0.070	-0.075	-0.048	356.8	360.2	421.7	397.6	362.7	321.0	0.81	0.81	0.79	0.79	0.79	0.90	0.925009	1.000000	-
Rv2815c	-	4	201.0	247.0	230.4	235.4	205.9	169.3	-0.094	0.197	0.099	0.129	-0.060	-0.334	201.0	247.0	230.4	235.4	205.9	169.3	1.00	1.00	1.00	1.00	1.00	1.00	0.897585	1.000000	-
Rv2816c	-	14	18.4	17.8	19.1	13.0	13.9	15.0	0.145	0.105	0.186	-0.240	-0.165	-0.085	40.8	35.6	35.7	25.9	27.8	23.3	0.45	0.50	0.54	0.50	0.50	0.64	0.527194	1.000000	-
Rv2817c	-	18	24.2	26.2	26.3	24.8	25.3	24.5	-0.049	0.049	0.050	-0.021	0.003	-0.036	40.8	42.9	49.7	38.2	41.3	44.0	0.59	0.61	0.53	0.65	0.61	0.56	0.933509	1.000000	-
Rv2818c	-	22	73.1	71.3	87.0	89.2	67.8	44.0	0.020	-0.015	0.256	0.290	-0.083	-0.654	86.2	82.5	98.1	98.1	78.5	52.3	0.85	0.86	0.89	0.91	0.86	0.84	0.091303	0.704642	-
Rv2819c	-	20	36.2	35.3	37.3	29.0	34.5	41.9	0.019	-0.015	0.054	-0.260	-0.044	0.206	55.8	45.5	67.7	49.7	40.5	47.9	0.65	0.78	0.55	0.58	0.85	0.88	0.018564	0.223109	-
Rv2820c	-	16	101.6	77.5	70.5	89.7	80.6	85.3	0.258	-0.113	-0.241	0.087	-0.060	0.017	108.4	77.5	86.8	97.9	92.1	97.5	0.94	1.00	0.81	0.92	0.88	0.88	0.245056	1.000000	-
Rv2821c	-	9	65.8	65.6	63.5	79.8	72.9	112.6	-0.206	-0.211	-0.255	0.054	-0.068	0.525	74.0	73.8	87.9	93.7	87.5	119.2	0.89	0.89	0.72	0.85	0.83	0.94	0.469419	1.000000	-
Rv2822c	-	13	59.0	64.7	61.6	56.5	66.0	82.0	-0.128	-0.007	-0.071	-0.186	0.021	0.315	69.8	73.1	76.3	66.8	74.6	97.0	0.85	0.88	0.81	0.85	0.88	0.85	0.759356	1.000000	-
Rv2823c	-	41	87.6	82.9	88.7	80.8	69.8	81.3	0.092	0.017	0.109	-0.017	-0.216	-0.009	101.6	89.4	102.4	97.5	81.8	86.6	0.86	0.93	0.87	0.83	0.85	0.94	0.519639	1.000000	-
Rv2824c	-	16	116.9	120.7	122.3	143.9	133.7	143.7	-0.149	-0.105	-0.087	0.139	0.037	0.137	127.6	137.9	126.3	150.2	133.7	143.7	0.92	0.88	0.97	0.96	1.00	1.00	0.168054	0.996892	-
Rv2825c	-	5	103.3	87.1	106.9	129.8	96.4	93.6	0.006	-0.227	0.053	0.322	-0.089	-0.130	129.1	145.2	133.6	162.3	137.7	117.0	0.80	0.60	0.80	0.80	0.70	0.80	0.952509	1.000000	-
Rv2826c	-	11	110.3	120.6	108.9	119.5	114.8	119.2	-0.065	0.060	-0.082	0.047	-0.009	0.043	129.9	139.7	133.1	157.7	126.2	138.0	0.85	0.86	0.82	0.76	0.91	0.86	0.961675	1.000000	-
Rv2827c	-	13	4.9	3.5	3.8	6.1	8.2	9.5	-0.155	-0.368	-0.316	0.015	0.262	0.395	31.7	15.2	33.2	34.1	42.6	49.2	0.15	0.23	0.12	0.18	0.19	0.19	0.606592	1.000000	-
Rv2828c	-	5	104.5	83.7	112.0	126.6	121.2	99.9	-0.045	-0.350	0.050	0.220	0.160	-0.106	130.6	119.5	139.9	158.2	151.6	124.9	0.80	0.70	0.80	0.80	0.80	0.80	0.992259	1.000000	-
Rv2829c	-	4	67.3	117.7	85.9	118.9	80.9	112.3	-0.500	0.264	-0.169	0.278	-0.249	0.200	73.4	134.5	85.9	129.7	80.9	112.3	0.92	0.88	1.00	0.92	1.00	1.00	0.576004	1.000000	-
Rv2830c	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2831	echA16	6	132.3	95.3	110.4	83.6	83.4	74.3	0.435	-0.017	0.184	-0.197	-0.200	-0.358	148.8	127.1	120.4	115.8	91.0	111.4	0.89	0.75	0.92	0.72	0.92	0.67	0.505892	1.000000	-
Rv2832c	ugpC	7	65.2	45.7	50.5	58.3	57.1	82.2	0.115	-0.353	-0.225	-0.035	-0.061	0.427	91.3	64.0	64.2	76.5	80.0	95.9	0.71	0.71	0.79	0.76	0.71	0.86	0.786807	1.000000	-
Rv2833c	ugpB	19	40.0	33.2	42.8	37.1	31.2	37.1	0.104	-0.135	0.190	0.005	-0.211	0.008	61.7	52.5	60.3	50.3	51.6	54.3	0.65	0.63	0.71	0.74	0.61	0.68	0.906263	1.000000	-
Rv2834c	ugpE	6	90.0	77.6	67.7	56.6	85.8	62.3	0.278	0.076	-0.108	-0.346	0.213	-0.218	95.3	77.6	81.2	84.9	85.8	62.3	0.94	1.00	0.83	0.67	1.00	1.00	0.062246	0.550688	-
Rv2835c	ugpA	14	73.7	62.2	70.0	58.4	54.1	63.3	0.198	-0.029	0.129	-0.114	-0.216	-0.008	106.8	83.0	81.7	81.8	72.1	77.0	0.69	0.75	0.86	0.71	0.75	0.82	0.781124	1.000000	-
Rv2836c	dinF	21	125.7	108.7	147.7	120.4	119.5	111.9	0.038	-0.163	0.263	-0.022	-0.032	-0.124	165.0	147.3	200.2	154.8	147.6	146.8	0.76	0.74	0.74	0.78	0.81	0.76	0.997045	1.000000	-
Rv2837c	-	13	18.4	39.9	19.2	23.7	34.5	24.5	-0.436	0.502	-0.388	-0.144	0.317	-0.104	37.8	61.0	62.5	44.0	52.8	33.5	0.49	0.65	0.31	0.54	0.65	0.73	0.051555	0.482878	-
Rv2838c	rbfA	7	56.2	71.3	42.5	59.2	65.1	38.8	0.016	0.335	-0.350	0.086	0.212	-0.467	78.6	71.3	54.0	62.2	65.1	45.2	0.71	1.00	0.79	0.95	1.00	0.86	0.048816	0.464875	-
Rv2839c	infB	24	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2840c	-	5	99.3	38.6	61.1	45.8	61.3	46.0	0.712	-0.547	0.054	-0.326	0.059	-0.322	124.1	48.2	76.4	57.3	76.7	57.4	0.80	0.80	0.80	0.80	0.80	0.80	0.423144	1.000000	-
Rv2841c	nusA	12	0.3	0.0	0.0	0.0	0.0	0.0	0.075	-0.015	-0.015	-0.015	-0.015	-0.015	11.6	0.0	0.0	0.0	0.0	0.0	0.03	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2842c	-	6	58.7	34.7	53.6	21.0	18.7	22.2	0.677	-0.003	0.558	-0.613	-0.751	-0.551	75.4	37.9	71.5	27.1	37.3	29.6	0.78	0.92	0.75	0.78	0.50	0.75	0.000906	0.018440	-
Rv2843	-	6	38.2	105.5	56.7	87.1	89.9	56.1	-0.839	0.516	-0.325	0.253	0.297	-0.337	43.0	126.6	68.0	92.2	107.9	67.4	0.89	0.83	0.83	0.94	0.83	0.83	0.001072	0.021389	-
Rv2844	-	4	88.5	122.2	70.4	126.4	122.6	87.1	-0.206	0.238	-0.517	0.284	0.243	-0.228	88.5	122.2	93.9	126.4	122.6	87.1	1.00	1.00	0.75	1.00	1.00	1.00	0.313448	1.000000	-
Rv2845c	proS	29	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2846c	efpA	28	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2847c	cysG	14	34.7	35.2	32.9	50.2	42.9	27.5	-0.090	-0.069	-0.157	0.386	0.182	-0.379	56.0	47.0	57.5	72.7	54.6	42.7	0.62	0.75	0.57	0.69	0.79	0.64	0.679945	1.000000	-
Rv2848c	cobB	22	181.9	173.1	178.1	171.2	163.6	160.2	0.084	0.014	0.054	-0.001	-0.065	-0.094	230.8	190.4	200.9	179.4	175.5	176.2	0.79	0.91	0.89	0.95	0.93	0.91	0.407102	1.000000	-
Rv2849c	cobO	6	123.7	101.3	86.6	87.4	88.8	82.7	0.363	0.087	-0.128	-0.115	-0.093	-0.191	159.0	110.5	115.5	104.9	96.9	82.7	0.78	0.92	0.75	0.83	0.92	1.00	0.681273	1.000000	-
Rv2850c	-	14	102.4	79.2	66.8	89.0	97.5	82.7	0.234	-0.116	-0.346	0.043	0.167	-0.057	113.1	92.5	77.9	101.0	97.5	89.1	0.90	0.86	0.86	0.88	1.00	0.93	0.459959	1.000000	-
Rv2851c	-	8	151.0	108.4	118.5	131.6	134.9	128.3	0.221	-0.238	-0.115	0.030	0.064	-0.005	190.7	123.9	135.5	150.4	134.9	128.3	0.79	0.88	0.88	0.88	1.00	1.00	0.453626	1.000000	-
Rv2852c	mqo	19	142.9	128.8	104.0	120.2	128.3	108.0	0.219	0.075	-0.221	-0.021	0.069	-0.169	166.2	148.3	127.5	134.4	147.7	128.2	0.86	0.87	0.82	0.89	0.87	0.84	0.969691	1.000000	-
Rv2853	PE_PGRS48	31	153.3	181.2	167.0	167.8	176.1	165.5	-0.132	0.102	-0.013	-0.006	0.062	-0.025	167.7	193.7	195.3	181.5	185.1	176.9	0.91	0.94	0.85	0.92	0.95	0.94	0.824618	1.000000	-
Rv2854	-	16	91.9	92.8	96.6	82.7	92.4	94.9	0.000	0.014	0.068	-0.144	0.008	0.044	116.1	118.8	134.4	104.4	109.5	116.8	0.79	0.78	0.72	0.79	0.84	0.81	0.995246	1.000000	-
Rv2855	mtr	27	43.6	36.7	41.3	38.5	41.9	29.6	0.157	-0.065	0.086	-0.004	0.105	-0.332	65.4	55.0	58.7	57.7	50.3	51.6	0.67	0.67	0.70	0.67	0.83	0.57	0.337904	1.000000	-
Rv2856	nicT	14	66.9	52.7	48.9	51.4	59.0	71.0	0.184	-0.135	-0.233	-0.166	0.016	0.263	74.0	70.2	65.2	63.5	63.6	90.3	0.90	0.75	0.75	0.81	0.93	0.79	0.333927	1.000000	-
Rv2857c	-	11	59.1	52.8	48.9	46.5	40.7	41.4	0.269	0.119	0.018	-0.049	-0.221	-0.198	88.7	64.5	67.2	61.3	52.6	50.6	0.67	0.82	0.73	0.76	0.77	0.82	0.868764	1.000000	-
Rv2858c	aldC	12	48.5	47.4	71.3	65.1	64.9	41.6	-0.200	-0.231	0.312	0.190	0.186	-0.400	76.0	71.1	85.6	80.9	97.4	55.5	0.64	0.67	0.83	0.81	0.67	0.75	0.429133	1.000000	-
Rv2859c	-	15	85.7	104.0	126.5	111.9	107.9	96.8	-0.284	-0.019	0.252	0.081	0.031	-0.118	98.9	120.0	146.0	136.1	115.6	100.2	0.87	0.87	0.87	0.82	0.93	0.97	0.354281	1.000000	-
Rv2860c	glnA4	30	65.1	69.6	83.4	64.6	75.4	77.1	-0.145	-0.056	0.189	-0.155	0.052	0.082	87.4	81.8	94.4	76.5	87.0	94.4	0.74	0.85	0.88	0.84	0.87	0.82	0.467556	1.000000	-
Rv2861c	mapB	11	7.9	13.4	2.3	13.9	25.8	13.2	-0.464	0.051	-1.282	0.094	0.795	0.036	21.6	29.4	12.6	23.0	33.3	18.1	0.36	0.45	0.18	0.61	0.77	0.73	0.000121	0.003067	-
Rv2862c	-	5	361.7	348.7	314.7	248.1	231.5	257.5	0.296	0.244	0.098	-0.239	-0.337	-0.186	361.7	348.7	314.7	286.2	289.4	257.5	1.00	1.00	1.00	0.87	0.80	1.00	0.390585	1.000000	-
Rv2863	-	3	308.0	326.2	301.3	383.6	299.2	291.9	-0.047	0.035	-0.078	0.265	-0.088	-0.123	308.0	326.2	301.3	383.6	299.2	291.9	1.00	1.00	1.00	1.00	1.00	1.00	0.506978	1.000000	-
Rv2864c	-	18	158.8	178.5	192.5	198.6	185.9	210.7	-0.233	-0.069	0.037	0.081	-0.012	0.164	209.2	200.8	231.0	238.3	202.8	229.9	0.76	0.89	0.83	0.83	0.92	0.92	0.851349	1.000000	-
Rv2865	-	2	191.0	236.6	182.9	199.8	180.1	217.4	-0.074	0.228	-0.134	-0.011	-0.157	0.108	191.0	236.6	182.9	199.8	180.1	217.4	1.00	1.00	1.00	1.00	1.00	1.00	0.932987	1.000000	-
Rv2866	-	3	423.7	393.4	436.2	395.8	360.9	334.2	0.116	0.010	0.157	0.019	-0.113	-0.222	423.7	393.4	436.2	395.8	360.9	334.2	1.00	1.00	1.00	1.00	1.00	1.00	0.580695	1.000000	-
Rv2867c	-	11	121.1	164.2	123.8	104.8	100.2	149.1	-0.068	0.356	-0.038	-0.268	-0.329	0.221	142.7	200.7	151.3	128.1	122.5	193.0	0.85	0.82	0.82	0.82	0.82	0.77	0.672584	1.000000	-
Rv2868c	ispG	11	0.7	0.0	0.0	0.0	0.0	0.0	0.153	-0.033	-0.033	-0.033	-0.033	-0.033	22.6	0.0	0.0	0.0	0.0	0.0	0.03	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2869c	-	18	86.6	84.2	97.9	35.1	69.7	88.2	0.160	0.122	0.329	-1.031	-0.134	0.185	103.9	91.9	117.5	52.7	73.8	93.4	0.83	0.92	0.83	0.67	0.94	0.94	0.000374	0.008332	-
Rv2870c	dxr	14	11.2	20.7	15.2	16.4	15.3	20.0	-0.409	0.263	-0.088	-0.006	-0.082	0.221	93.8	145.2	106.4	114.6	107.0	140.1	0.12	0.14	0.14	0.14	0.14	0.14	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2871	-	7	27.7	23.3	29.1	24.0	24.8	28.7	0.065	-0.145	0.124	-0.109	-0.068	0.110	72.7	54.3	81.4	72.0	69.6	100.6	0.38	0.43	0.36	0.33	0.36	0.29	0.986947	1.000000	-
Rv2872	-	10	131.4	149.6	116.4	120.9	111.7	127.1	0.056	0.237	-0.112	-0.059	-0.169	0.010	146.0	149.6	122.5	125.1	117.6	133.8	0.90	1.00	0.95	0.97	0.95	0.95	0.939799	1.000000	-
Rv2873	mpt83	12	134.1	129.6	106.1	126.1	106.1	106.9	0.176	0.129	-0.149	0.090	-0.148	-0.138	150.9	141.4	121.3	126.1	115.8	116.6	0.89	0.92	0.88	1.00	0.92	0.92	0.714794	1.000000	-
Rv2874	dipZ	42	58.0	48.1	49.8	52.2	63.4	57.1	0.077	-0.170	-0.125	-0.062	0.194	0.054	73.1	58.6	60.6	65.2	69.1	62.3	0.79	0.82	0.82	0.80	0.92	0.92	0.196937	1.000000	-
Rv2875	mpt70	10	77.3	74.1	76.2	69.0	59.5	67.2	0.123	0.067	0.104	-0.030	-0.228	-0.065	96.6	82.3	89.6	86.2	70.0	84.0	0.80	0.90	0.85	0.80	0.85	0.80	0.992545	1.000000	-
Rv2876	-	1	7.5	10.2	0.0	9.3	26.2	9.4	-0.300	-0.022	-1.626	-0.113	1.015	-0.100	22.6	10.2	0.0	13.9	26.2	18.8	0.33	1.00	0.00	0.67	1.00	0.50	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2877c	-	19	185.5	168.6	172.0	192.7	165.5	160.3	0.089	-0.045	-0.017	0.142	-0.071	-0.115	199.5	183.1	198.1	203.4	190.6	174.1	0.93	0.92	0.87	0.95	0.87	0.92	0.963297	1.000000	-
Rv2878c	mpt53	7	163.2	142.6	156.9	168.3	168.2	146.6	0.049	-0.140	-0.007	0.092	0.091	-0.101	171.4	142.6	156.9	168.3	168.2	146.6	0.95	1.00	1.00	1.00	1.00	1.00	0.957621	1.000000	-
Rv2879c	-	9	314.1	293.4	279.7	288.3	238.9	272.5	0.157	0.060	-0.007	0.036	-0.231	-0.044	314.1	293.4	279.7	288.3	238.9	272.5	1.00	1.00	1.00	1.00	1.00	1.00	0.841707	1.000000	-
Rv2880c	-	12	264.3	266.2	230.1	251.7	213.2	227.5	0.124	0.134	-0.072	0.055	-0.180	-0.088	271.8	290.4	251.1	266.5	232.6	248.2	0.97	0.92	0.92	0.94	0.92	0.92	0.984913	1.000000	-
Rv2881c	cdsA	10	18.0	22.9	20.9	19.8	22.3	16.6	-0.123	0.155	0.044	-0.017	0.121	-0.215	108.2	229.3	208.7	198.0	222.8	166.1	0.17	0.10	0.10	0.10	0.10	0.10	0.700077	1.000000	-
Rv2882c	frr	16	3.5	3.5	2.2	2.6	3.6	1.9	0.113	0.109	-0.137	-0.049	0.122	-0.190	56.1	37.2	34.4	41.7	38.0	20.2	0.06	0.09	0.06	0.06	0.09	0.09	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2883c	pyrH	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2884	-	12	216.4	219.3	204.0	241.6	206.2	195.2	0.018	0.036	-0.066	0.172	-0.051	-0.128	243.5	228.8	244.8	263.5	215.2	195.2	0.89	0.96	0.83	0.92	0.96	1.00	0.728358	1.000000	-
Rv2885c	-	16	118.5	130.3	114.3	116.5	106.9	118.3	0.012	0.144	-0.037	-0.012	-0.131	0.010	123.7	130.3	122.0	116.5	110.3	130.5	0.96	1.00	0.94	1.00	0.97	0.91	0.434379	1.000000	-
Rv2886c	-	18	118.6	112.8	88.5	114.9	118.7	119.0	0.078	0.008	-0.325	0.035	0.079	0.083	142.4	116.0	102.8	126.7	118.7	133.9	0.83	0.97	0.86	0.91	1.00	0.89	0.166385	0.996892	-
Rv2887	-	7	106.2	109.1	90.2	95.2	95.8	93.9	0.105	0.142	-0.119	-0.045	-0.037	-0.064	111.5	127.3	114.8	111.1	111.8	109.5	0.95	0.86	0.79	0.86	0.86	0.86	0.970738	1.000000	-
Rv2888c	amiC	29	183.6	196.0	190.7	173.6	176.7	193.3	-0.015	0.076	0.037	-0.094	-0.069	0.057	197.3	210.6	208.7	184.2	176.7	203.9	0.93	0.93	0.91	0.94	1.00	0.95	0.569569	1.000000	-
Rv2889c	tsf	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2890c	rpsB	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2891	-	12	153.0	184.3	180.6	172.0	197.6	189.1	-0.224	0.038	0.009	-0.059	0.136	0.074	162.0	192.3	206.3	193.6	197.6	189.1	0.94	0.96	0.88	0.89	1.00	1.00	0.381953	1.000000	-
Rv2892c	PPE45	18	171.4	162.2	163.4	169.7	154.9	186.4	0.028	-0.049	-0.039	0.014	-0.114	0.146	188.9	182.5	178.3	176.2	154.9	209.6	0.91	0.89	0.92	0.96	1.00	0.89	0.595447	1.000000	-
Rv2893	-	7	255.4	248.2	274.3	267.9	236.1	252.8	-0.002	-0.043	0.099	0.066	-0.113	-0.016	298.0	289.6	295.4	267.9	275.5	295.0	0.86	0.86	0.93	1.00	0.86	0.86	0.801061	1.000000	-
Rv2894c	xerC	11	98.6	112.7	115.7	139.4	114.7	131.3	-0.256	-0.072	-0.036	0.223	-0.047	0.140	125.1	137.8	141.4	158.6	140.2	144.5	0.79	0.82	0.82	0.88	0.82	0.91	0.959528	1.000000	-
Rv2895c	viuB	11	197.8	193.3	184.5	188.5	183.6	213.2	0.031	-0.001	-0.067	-0.037	-0.074	0.137	217.6	202.5	225.5	200.7	202.0	234.5	0.91	0.95	0.82	0.94	0.91	0.91	0.980784	1.000000	-
Rv2896c	-	17	191.8	157.3	168.1	181.9	191.9	167.5	0.117	-0.160	-0.068	0.043	0.118	-0.073	212.6	184.4	190.5	206.1	210.4	189.8	0.90	0.85	0.88	0.88	0.91	0.88	0.995938	1.000000	-
Rv2897c	-	11	74.0	88.8	81.4	95.2	82.2	83.3	-0.174	0.074	-0.045	0.168	-0.031	-0.015	90.5	102.8	94.3	104.7	100.5	114.5	0.82	0.86	0.86	0.91	0.82	0.73	0.765331	1.000000	-
Rv2898c	-	4	23.4	20.6	45.1	24.4	26.9	29.7	-0.230	-0.383	0.589	-0.182	-0.066	0.056	40.2	32.9	45.1	32.5	30.7	33.9	0.58	0.62	1.00	0.75	0.88	0.88	0.479466	1.000000	-
Rv2899c	fdhD	11	72.6	71.7	117.4	80.2	71.5	92.6	-0.204	-0.220	0.454	-0.069	-0.224	0.128	126.1	98.6	152.0	120.3	143.0	113.2	0.58	0.73	0.77	0.67	0.50	0.82	0.387182	1.000000	-
Rv2900c	fdhF	27	130.4	104.1	118.7	117.4	108.3	119.6	0.157	-0.155	0.027	0.012	-0.099	0.037	160.0	127.7	152.6	137.8	130.0	143.5	0.81	0.81	0.78	0.85	0.83	0.83	0.995314	1.000000	-
Rv2901c	-	9	34.3	23.7	29.6	25.3	33.1	39.5	0.129	-0.325	-0.053	-0.245	0.085	0.310	42.1	30.4	53.3	29.7	37.2	41.9	0.81	0.78	0.56	0.85	0.89	0.94	0.103131	0.749708	-
Rv2902c	rnhB	10	142.1	142.5	131.2	133.0	149.8	128.4	0.043	0.047	-0.068	-0.050	0.116	-0.099	147.0	158.4	131.2	147.8	157.7	135.1	0.97	0.90	1.00	0.90	0.95	0.95	0.836066	1.000000	-
Rv2903c	lepB	12	0.3	0.0	0.0	0.0	0.4	0.0	0.057	-0.033	-0.033	-0.033	0.071	-0.033	11.6	0.0	0.0	0.0	9.0	0.0	0.03	0.00	0.00	0.00	0.04	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2904c	rplS	4	17.3	11.4	6.3	11.7	17.4	5.1	0.434	-0.007	-0.547	0.011	0.436	-0.716	34.7	22.9	25.2	28.0	34.7	13.5	0.50	0.50	0.25	0.42	0.50	0.38	0.583680	1.000000	-
Rv2905	lppW	16	123.9	106.6	106.6	124.8	124.5	113.7	0.083	-0.125	-0.125	0.094	0.090	-0.036	132.1	110.0	126.3	136.2	137.3	145.5	0.94	0.97	0.84	0.92	0.91	0.78	0.405318	1.000000	-
Rv2906c	trmD	9	0.4	0.6	0.0	0.0	0.8	0.0	0.035	0.068	-0.084	-0.084	0.132	-0.084	11.6	10.0	0.0	0.0	14.5	0.0	0.04	0.06	0.00	0.00	0.06	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2907c	rimM	6	5.0	13.6	2.1	15.8	3.2	15.3	-0.500	0.397	-0.996	0.551	-0.794	0.519	22.6	20.5	12.6	23.6	12.7	20.4	0.22	0.67	0.17	0.67	0.25	0.75	0.009515	0.134585	-
Rv2908c	-	6	23.1	23.0	17.7	33.7	22.9	15.9	0.022	0.016	-0.288	0.481	0.008	-0.409	52.0	39.4	42.4	55.1	39.2	38.0	0.44	0.58	0.42	0.61	0.58	0.42	0.944755	1.000000	-
Rv2909c	rpsP	7	4.8	6.5	6.7	10.9	15.2	12.2	-0.555	-0.318	-0.295	0.141	0.492	0.254	50.3	45.7	47.0	76.0	106.6	85.1	0.10	0.14	0.14	0.14	0.14	0.14	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2910c	-	10	92.2	141.4	96.6	114.8	105.1	135.4	-0.294	0.296	-0.232	0.007	-0.116	0.236	98.8	141.4	120.7	127.6	116.7	142.5	0.93	1.00	0.80	0.90	0.90	0.95	0.344863	1.000000	-
Rv2911	dacB2	10	143.2	121.8	129.5	136.8	146.5	121.9	0.100	-0.125	-0.040	0.036	0.132	-0.124	153.4	143.3	136.3	171.0	209.3	152.4	0.93	0.85	0.95	0.80	0.70	0.80	0.231977	1.000000	-
Rv2912c	-	8	108.7	145.8	125.6	121.3	109.6	147.8	-0.210	0.198	-0.010	-0.058	-0.198	0.217	118.6	166.7	133.9	121.3	109.6	157.7	0.92	0.88	0.94	1.00	1.00	0.94	0.282809	1.000000	-
Rv2913c	-	25	71.8	76.0	79.4	74.3	82.5	80.5	-0.102	-0.025	0.034	-0.056	0.087	0.054	82.8	84.5	90.2	85.7	93.8	89.5	0.87	0.90	0.88	0.87	0.88	0.90	0.987804	1.000000	-
Rv2914c	pknI	23	106.9	101.9	114.4	118.7	115.9	117.3	-0.070	-0.136	0.022	0.074	0.041	0.058	131.8	130.3	142.2	141.2	130.1	128.5	0.81	0.78	0.80	0.84	0.89	0.91	0.948529	1.000000	-
Rv2915c	-	12	197.1	175.0	201.7	236.5	152.2	161.1	0.072	-0.095	0.105	0.329	-0.290	-0.211	215.1	190.9	201.7	257.9	152.2	161.1	0.92	0.92	1.00	0.92	1.00	1.00	0.110108	0.784724	-
Rv2916c	ffh	9	5.0	4.5	1.7	4.2	8.5	3.9	0.055	-0.018	-0.521	-0.070	0.487	-0.117	33.9	27.2	31.0	22.6	38.3	17.5	0.15	0.17	0.06	0.19	0.22	0.22	0.700051	1.000000	-
Rv2917	-	23	192.2	203.5	198.2	180.9	176.2	188.3	0.017	0.098	0.060	-0.068	-0.105	-0.011	221.0	217.7	212.0	189.1	192.9	206.3	0.87	0.93	0.93	0.96	0.91	0.91	0.933405	1.000000	-
Rv2918c	glnD	25	109.8	99.2	117.5	105.9	106.8	96.5	0.050	-0.091	0.143	-0.001	0.011	-0.129	137.3	120.9	143.3	128.1	130.3	117.7	0.80	0.82	0.82	0.83	0.82	0.82	0.999832	1.000000	-
Rv2919c	glnB	5	13.9	14.3	14.4	17.5	9.8	25.3	-0.142	-0.114	-0.102	0.111	-0.500	0.536	23.2	20.4	24.1	26.3	16.3	50.5	0.60	0.70	0.60	0.67	0.60	0.50	0.138238	0.908683	-
Rv2920c	amt	17	61.6	70.9	59.2	64.8	56.7	69.5	-0.046	0.142	-0.100	0.020	-0.156	0.115	80.6	80.4	83.9	70.3	68.9	76.2	0.76	0.88	0.71	0.92	0.82	0.91	0.462740	1.000000	-
Rv2921c	ftsY	13	0.3	0.0	0.0	0.3	0.0	0.0	0.053	-0.030	-0.030	0.063	-0.030	-0.030	11.6	0.0	0.0	13.0	0.0	0.0	0.03	0.00	0.00	0.03	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2922c	smc	35	111.6	123.5	111.6	105.1	110.0	110.0	-0.005	0.136	-0.004	-0.088	-0.024	-0.025	130.2	135.1	132.4	119.9	128.3	140.0	0.86	0.91	0.84	0.88	0.86	0.79	0.574446	1.000000	-
Rv2922A	acyP	1	50.9	0.0	37.8	56.4	0.0	71.7	0.442	-3.040	0.059	0.578	-3.040	0.898	50.9	0.0	75.7	56.4	0.0	71.7	1.00	0.00	0.50	1.00	0.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2923c	-	5	133.1	134.2	182.4	162.6	155.3	157.7	-0.205	-0.194	0.235	0.075	0.010	0.031	153.6	134.2	182.4	162.6	155.3	157.7	0.87	1.00	1.00	1.00	1.00	1.00	0.722786	1.000000	-
Rv2924c	fpg	13	334.8	309.0	268.7	300.7	307.4	314.7	0.128	0.014	-0.184	-0.024	0.007	0.040	343.7	309.0	268.7	300.7	307.4	314.7	0.97	1.00	1.00	1.00	1.00	1.00	0.903855	1.000000	-
Rv2925c	rnc	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2926c	-	4	53.7	57.6	68.8	60.1	54.8	63.3	-0.141	-0.049	0.190	0.008	-0.113	0.078	214.7	115.1	137.6	180.2	109.7	168.9	0.25	0.50	0.50	0.33	0.50	0.38	0.969478	1.000000	-
Rv2927c	-	10	0.0	0.0	0.0	0.0	0.7	0.0	-0.034	-0.034	-0.034	-0.034	0.161	-0.034	0.0	0.0	0.0	0.0	14.5	0.0	0.00	0.00	0.00	0.00	0.05	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2928	tesA	24	15.0	8.1	9.5	5.7	7.1	19.1	0.346	-0.268	-0.117	-0.561	-0.378	0.613	40.0	17.6	35.1	18.5	18.0	33.9	0.38	0.46	0.27	0.31	0.40	0.56	0.000004	0.000129	-
Rv2929	-	4	8.0	9.0	0.0	2.4	7.4	2.5	0.390	0.503	-0.985	-0.413	0.329	-0.396	16.0	18.0	0.0	14.6	19.8	10.1	0.50	0.50	0.00	0.17	0.38	0.25	0.177501	1.000000	-
Rv2930	fadD26	33	321.0	173.8	258.3	127.5	105.8	216.9	0.665	-0.201	0.357	-0.633	-0.891	0.110	429.4	244.1	378.9	200.4	136.9	275.2	0.75	0.71	0.68	0.64	0.77	0.79	0.006189	0.094615	-
Rv2931	ppsA	69	222.4	114.4	208.2	84.6	69.0	157.6	0.622	-0.307	0.530	-0.721	-0.996	0.139	277.3	153.2	249.9	108.8	89.0	190.8	0.80	0.75	0.83	0.78	0.78	0.83	0.000000	0.000000	-
Rv2932	ppsB	64	205.4	113.3	193.5	65.8	58.1	138.5	0.650	-0.181	0.566	-0.921	-1.087	0.098	245.0	139.5	238.2	86.6	78.3	167.2	0.84	0.81	0.81	0.76	0.74	0.83	0.000000	0.000000	-
Rv2933	ppsC	79	217.3	118.7	216.9	83.8	72.2	155.2	0.577	-0.269	0.574	-0.747	-0.948	0.104	248.8	138.9	248.3	103.4	89.1	176.4	0.87	0.85	0.87	0.81	0.81	0.88	0.000000	0.000000	-
Rv2934	ppsD	56	273.0	145.0	239.5	105.0	86.3	186.3	0.647	-0.243	0.462	-0.690	-0.960	0.108	334.8	180.4	291.5	135.7	102.8	226.8	0.82	0.80	0.82	0.77	0.84	0.82	0.000000	0.000000	-
Rv2935	ppsE	63	415.5	223.0	364.2	151.9	124.7	249.6	0.695	-0.188	0.507	-0.728	-1.003	-0.029	438.7	246.5	395.6	159.5	139.0	271.2	0.95	0.90	0.92	0.95	0.90	0.92	0.000000	0.000000	-
Rv2936	drrA	17	304.3	302.1	252.8	263.0	284.5	339.7	0.063	0.053	-0.200	-0.144	-0.032	0.219	304.3	302.1	260.4	263.0	284.5	339.7	1.00	1.00	0.97	1.00	1.00	1.00	0.703110	1.000000	-
Rv2937	drrB	21	113.2	110.4	113.1	94.7	98.4	122.5	0.056	0.021	0.055	-0.190	-0.138	0.165	173.9	159.9	176.0	142.0	133.3	151.3	0.65	0.69	0.64	0.67	0.74	0.81	0.964560	1.000000	-
Rv2938	drrC	24	127.7	142.1	123.2	116.0	123.5	161.3	-0.049	0.099	-0.099	-0.182	-0.095	0.277	139.3	148.2	134.3	124.6	134.7	168.4	0.92	0.96	0.92	0.93	0.92	0.96	0.673755	1.000000	-
Rv2939	papA5	26	141.2	93.9	122.3	60.3	57.9	113.2	0.503	-0.060	0.303	-0.659	-0.714	0.197	157.3	106.2	155.1	85.5	70.0	125.2	0.90	0.88	0.79	0.71	0.83	0.90	0.000378	0.008378	-
Rv2940c	mas	72	401.1	215.8	388.8	169.4	138.9	276.4	0.589	-0.291	0.544	-0.631	-0.909	0.059	426.8	237.2	411.7	187.7	150.3	288.4	0.94	0.91	0.94	0.90	0.92	0.96	0.000000	0.000000	-
Rv2941	fadD28	42	152.0	102.9	139.1	57.9	60.2	134.1	0.478	-0.063	0.355	-0.841	-0.789	0.304	172.5	115.3	160.1	73.0	73.3	148.2	0.88	0.89	0.87	0.79	0.82	0.90	0.000000	0.000000	-
Rv2942	mmpL7	38	247.8	268.3	216.1	208.4	205.7	253.8	0.085	0.197	-0.108	-0.160	-0.178	0.119	266.5	291.3	238.0	228.4	223.3	260.7	0.93	0.92	0.91	0.91	0.92	0.97	0.577147	1.000000	-
Rv2943	-	10	222.4	197.6	211.0	249.0	245.6	197.3	0.012	-0.154	-0.062	0.172	0.152	-0.156	247.1	197.6	263.8	249.0	258.5	197.3	0.90	1.00	0.80	1.00	0.95	1.00	0.196445	1.000000	-
Rv2943A	-	6	100.1	91.6	77.6	110.4	75.8	76.1	0.167	0.046	-0.180	0.302	-0.212	-0.207	163.8	109.9	93.1	124.2	91.0	91.3	0.61	0.83	0.83	0.89	0.83	0.83	0.796972	1.000000	-
Rv2944	-	10	62.8	58.5	49.7	69.6	47.9	51.5	0.137	0.042	-0.173	0.274	-0.221	-0.126	117.8	73.1	76.5	87.0	68.4	68.7	0.53	0.80	0.65	0.80	0.70	0.75	0.699065	1.000000	-
Rv2945c	lppX	10	93.8	95.0	99.3	87.2	86.5	132.7	-0.075	-0.058	0.004	-0.175	-0.186	0.404	97.0	95.0	104.6	87.2	86.5	132.7	0.97	1.00	0.95	1.00	1.00	1.00	0.718143	1.000000	-
Rv2946c	pks1	44	186.1	165.6	173.1	175.5	166.7	179.0	0.091	-0.072	-0.010	0.009	-0.063	0.037	215.4	177.7	195.3	198.0	193.0	199.4	0.86	0.93	0.89	0.89	0.86	0.90	0.929743	1.000000	-
Rv2947c	pks15	18	90.6	97.7	91.0	101.6	98.8	107.5	-0.106	-0.002	-0.099	0.051	0.013	0.129	116.5	106.6	131.1	127.6	111.2	113.8	0.78	0.92	0.69	0.80	0.89	0.94	0.358760	1.000000	-
Rv2948c	fadD22	44	119.3	113.9	119.3	110.6	115.2	121.4	0.032	-0.032	0.031	-0.073	-0.017	0.056	135.8	125.3	138.1	119.7	128.3	130.3	0.88	0.91	0.86	0.92	0.90	0.93	0.965094	1.000000	-
Rv2949c	-	20	4.7	8.6	7.1	7.6	6.0	6.6	-0.273	0.210	0.036	0.097	-0.095	-0.023	18.9	28.7	21.7	23.9	21.8	15.5	0.25	0.30	0.33	0.32	0.28	0.42	0.304749	1.000000	-
Rv2950c	fadD29	36	133.8	141.7	123.3	134.1	140.3	144.3	-0.025	0.054	-0.138	-0.023	0.041	0.080	182.9	167.2	167.5	174.4	165.6	185.6	0.73	0.85	0.74	0.77	0.85	0.78	0.913140	1.000000	-
Rv2951c	-	23	179.9	193.4	186.8	180.5	183.9	188.4	-0.043	0.059	0.010	-0.038	-0.012	0.022	182.5	193.4	204.6	185.9	183.9	188.4	0.99	1.00	0.91	0.97	1.00	1.00	0.332561	1.000000	-
Rv2952	-	14	55.2	68.0	59.8	53.5	60.9	81.9	-0.180	0.098	-0.074	-0.221	-0.051	0.348	68.2	76.2	76.1	59.2	63.1	88.2	0.81	0.89	0.79	0.90	0.96	0.93	0.287970	1.000000	-
Rv2953	-	23	126.1	128.7	143.3	125.2	115.7	150.5	-0.059	-0.031	0.118	-0.069	-0.179	0.187	145.0	155.8	160.7	141.7	129.8	157.4	0.87	0.83	0.89	0.88	0.89	0.96	0.840174	1.000000	-
Rv2954c	-	13	336.5	279.2	346.3	331.3	313.0	303.5	0.079	-0.186	0.120	0.057	-0.024	-0.067	354.7	302.4	346.3	331.3	325.5	328.8	0.95	0.92	1.00	1.00	0.96	0.92	0.656470	1.000000	-
Rv2955c	-	16	169.2	167.9	160.4	157.5	151.0	177.9	0.044	0.033	-0.031	-0.056	-0.115	0.114	169.2	167.9	160.4	157.5	151.0	177.9	1.00	1.00	1.00	1.00	1.00	1.00	0.972823	1.000000	-
Rv2956	-	17	21.2	22.8	18.8	22.3	19.5	24.8	-0.019	0.063	-0.159	0.041	-0.117	0.165	51.5	70.3	42.6	43.8	41.4	40.1	0.41	0.32	0.44	0.51	0.47	0.62	0.515949	1.000000	-
Rv2957	-	15	224.7	216.5	218.9	213.9	227.2	247.3	-0.000	-0.053	-0.037	-0.070	0.015	0.135	273.3	231.9	252.6	234.8	243.4	247.3	0.82	0.93	0.87	0.91	0.93	1.00	0.577752	1.000000	-
Rv2958c	-	24	108.7	120.4	112.4	131.5	125.2	114.8	-0.123	0.018	-0.077	0.140	0.072	-0.048	134.9	141.0	158.7	163.2	139.7	122.5	0.81	0.85	0.71	0.81	0.90	0.94	0.378665	1.000000	-
Rv2959c	-	28	20.7	19.4	11.2	14.0	20.5	21.3	0.170	0.098	-0.498	-0.268	0.157	0.203	44.6	32.0	31.3	28.0	28.7	33.1	0.46	0.61	0.36	0.50	0.71	0.64	0.032881	0.349855	-
Rv2960c	-	7	187.9	167.9	171.1	170.6	212.6	179.2	0.048	-0.110	-0.083	-0.087	0.222	-0.018	187.9	167.9	184.2	170.6	212.6	179.2	1.00	1.00	0.93	1.00	1.00	1.00	0.909817	1.000000	-
Rv2961	-	7	281.3	241.1	239.3	281.0	232.6	245.0	0.148	-0.070	-0.081	0.146	-0.121	-0.047	311.0	281.3	239.3	327.8	271.4	245.0	0.90	0.86	1.00	0.86	0.86	1.00	0.544816	1.000000	-
Rv2962c	-	18	130.3	131.8	108.8	135.6	113.1	128.1	0.062	0.078	-0.188	0.117	-0.134	0.038	153.0	153.1	139.8	174.3	127.2	148.8	0.85	0.86	0.78	0.78	0.89	0.86	0.920680	1.000000	-
Rv2963	-	24	79.5	81.3	84.9	82.0	94.0	94.3	-0.107	-0.076	-0.018	-0.064	0.121	0.126	93.8	97.5	94.7	89.5	102.5	102.8	0.85	0.83	0.90	0.92	0.92	0.92	0.817097	1.000000	-
Rv2964	purU	17	119.4	117.4	130.9	103.3	106.0	119.4	0.039	0.016	0.167	-0.161	-0.125	0.039	141.6	117.4	134.8	122.5	116.2	150.3	0.84	1.00	0.97	0.84	0.91	0.79	0.053317	0.495885	-
Rv2965c	coaD	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2966c	-	7	170.4	190.1	173.4	190.4	182.2	144.5	-0.039	0.115	-0.014	0.117	0.055	-0.269	178.9	190.1	186.8	190.4	182.2	144.5	0.95	1.00	0.93	1.00	1.00	1.00	0.916621	1.000000	-
Rv2967c	pca	59	104.3	107.6	105.7	106.1	84.6	108.5	0.019	0.063	0.038	0.044	-0.267	0.075	117.5	127.0	127.3	122.0	104.0	123.1	0.89	0.85	0.83	0.87	0.81	0.88	0.399950	1.000000	-
Rv2968c	-	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2969c	-	10	0.0	0.0	0.0	0.5	0.0	0.0	-0.024	-0.024	-0.024	0.112	-0.024	-0.024	0.0	0.0	0.0	14.8	0.0	0.0	0.00	0.00	0.00	0.03	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2970c	lipN	16	186.6	210.6	206.3	187.6	197.4	180.9	-0.062	0.109	0.080	-0.053	0.018	-0.105	203.5	210.6	206.3	191.6	210.6	180.9	0.92	1.00	1.00	0.98	0.94	1.00	0.392679	1.000000	-
Rv2970A	-	3	14.6	25.6	20.8	20.5	18.1	39.8	-0.526	0.117	-0.127	-0.149	-0.292	0.666	21.9	25.6	31.3	23.0	18.1	47.7	0.67	1.00	0.67	0.89	1.00	0.83	0.010565	0.144370	-
Rv2971	-	13	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2972c	-	10	247.9	217.0	223.4	206.4	218.6	232.9	0.141	-0.047	-0.006	-0.118	-0.037	0.053	247.9	217.0	223.4	206.4	218.6	232.9	1.00	1.00	1.00	1.00	1.00	1.00	0.979542	1.000000	-
Rv2973c	recG	24	87.8	103.3	93.5	98.5	84.6	110.6	-0.127	0.096	-0.042	0.030	-0.178	0.189	119.3	121.0	121.2	118.3	123.0	136.1	0.74	0.85	0.77	0.83	0.69	0.81	0.660330	1.000000	-
Rv2974c	-	19	227.8	209.7	202.3	200.7	213.0	218.1	0.102	-0.015	-0.066	-0.077	0.007	0.041	265.0	227.7	219.6	211.8	213.0	230.2	0.86	0.92	0.92	0.95	1.00	0.95	0.518489	1.000000	-
Rv2975c	-	2	84.5	162.7	81.4	73.6	97.5	127.2	-0.291	0.615	-0.342	-0.478	-0.095	0.272	169.0	325.4	162.8	147.3	195.0	254.5	0.50	0.50	0.50	0.50	0.50	0.50	0.272020	1.000000	-
Rv2976c	ung	8	116.1	134.7	129.5	113.4	99.8	80.4	0.046	0.252	0.198	0.013	-0.163	-0.458	139.4	153.9	148.1	151.2	114.1	107.2	0.83	0.88	0.88	0.75	0.88	0.75	0.891787	1.000000	-
Rv2977c	thiL	6	0.0	1.7	0.0	0.0	0.0	0.9	-0.120	0.302	-0.120	-0.120	-0.120	0.119	0.0	10.2	0.0	0.0	0.0	10.8	0.00	0.17	0.00	0.00	0.00	0.08	0.312002	1.000000	-
Rv2978c	-	12	123.7	112.0	127.5	116.1	114.9	121.8	0.050	-0.087	0.092	-0.039	-0.052	0.028	171.3	141.5	180.1	154.7	162.2	162.4	0.72	0.79	0.71	0.75	0.71	0.75	0.999652	1.000000	-
Rv2979c	-	7	151.7	142.7	197.3	139.7	129.4	157.4	-0.012	-0.097	0.356	-0.127	-0.233	0.040	151.7	142.7	197.3	139.7	129.4	157.4	1.00	1.00	1.00	1.00	1.00	1.00	0.641479	1.000000	-
Rv2980	-	5	130.7	113.4	87.4	91.3	77.6	119.6	0.325	0.129	-0.230	-0.169	-0.392	0.202	150.9	141.8	145.7	91.3	77.6	149.5	0.87	0.80	0.60	1.00	1.00	0.80	0.050217	0.473675	-
Rv2981c	ddl	13	0.0	0.0	0.0	0.0	0.6	0.0	-0.027	-0.027	-0.027	-0.027	0.126	-0.027	0.0	0.0	0.0	0.0	14.5	0.0	0.00	0.00	0.00	0.00	0.04	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2982c	gpsA	11	323.8	333.9	316.6	298.1	265.3	236.4	0.129	0.173	0.097	0.012	-0.154	-0.317	323.8	333.9	348.3	298.1	291.8	273.7	1.00	1.00	0.91	1.00	0.91	0.86	0.165579	0.996469	-
Rv2983	-	5	90.2	90.8	66.3	70.3	92.0	67.2	0.173	0.181	-0.244	-0.166	0.200	-0.226	96.7	100.9	66.3	87.8	115.0	67.2	0.93	0.90	1.00	0.80	0.80	1.00	0.178831	1.000000	-
Rv2984	ppk	30	0.5	0.3	0.4	0.6	0.6	0.7	-0.004	-0.051	-0.029	0.020	0.026	0.037	11.6	10.2	12.6	27.4	19.0	20.3	0.04	0.03	0.03	0.02	0.03	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv2985	mutT1	15	47.0	54.3	68.4	57.0	55.9	45.0	-0.197	-0.008	0.300	0.058	0.031	-0.252	57.1	62.6	78.9	67.5	67.0	61.4	0.82	0.87	0.87	0.84	0.83	0.73	0.666332	1.000000	-
Rv2986c	hupB	8	7.1	10.7	4.7	6.1	7.9	7.7	-0.029	0.346	-0.347	-0.155	0.059	0.033	28.5	28.6	18.9	24.5	15.8	13.6	0.25	0.38	0.25	0.25	0.50	0.56	0.103479	0.750690	-
Rv2987c	leuD	7	6.6	7.2	0.9	5.4	1.0	3.7	0.349	0.419	-0.631	0.183	-0.598	-0.077	23.2	16.8	12.6	22.6	14.5	17.1	0.29	0.43	0.07	0.24	0.07	0.21	0.448062	1.000000	-
Rv2988c	leuC	12	48.4	36.5	31.1	14.0	6.2	33.8	0.679	0.318	0.114	-0.809	-1.579	0.220	69.7	48.7	57.4	29.7	16.4	47.7	0.69	0.75	0.54	0.47	0.38	0.71	0.000024	0.000695	-
Rv2989	-	6	111.7	128.4	126.4	120.5	89.3	149.8	-0.110	0.082	0.061	-0.006	-0.418	0.296	143.7	154.1	168.6	135.5	119.1	199.7	0.78	0.83	0.75	0.89	0.75	0.75	0.973262	1.000000	-
Rv2990c	-	17	122.4	125.8	126.5	106.6	136.7	164.2	-0.088	-0.050	-0.042	-0.278	0.066	0.322	135.7	142.6	148.3	115.7	149.9	169.2	0.90	0.88	0.85	0.92	0.91	0.97	0.380188	1.000000	-
Rv2991	-	5	236.7	200.9	249.4	176.6	179.9	251.8	0.130	-0.101	0.204	-0.283	-0.256	0.218	236.7	251.1	249.4	189.2	179.9	314.8	1.00	0.80	1.00	0.93	1.00	0.80	0.183583	1.000000	-
Rv2992c	gltX	19	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv2993c	-	8	7.1	15.8	7.5	3.5	5.3	5.0	-0.031	0.753	0.011	-0.538	-0.263	-0.312	28.4	42.2	19.9	14.1	14.2	13.2	0.25	0.38	0.38	0.25	0.38	0.38	0.028717	0.313920	-
Rv2994	-	19	64.6	73.0	75.5	85.4	79.4	79.9	-0.225	-0.060	-0.014	0.154	0.054	0.062	89.8	89.5	89.6	97.4	86.2	92.0	0.72	0.82	0.84	0.88	0.92	0.87	0.715115	1.000000	-
Rv2995c	leuB	9	40.3	41.2	29.5	13.4	3.6	26.2	0.562	0.590	0.169	-0.742	-1.834	0.022	51.8	49.4	48.3	27.7	16.3	36.2	0.78	0.83	0.61	0.48	0.22	0.72	0.000156	0.003800	-
Rv2996c	serA1	10	16.5	16.8	14.3	29.8	41.2	13.4	-0.326	-0.309	-0.482	0.366	0.775	-0.557	38.2	24.0	31.8	40.6	51.5	24.3	0.43	0.70	0.45	0.73	0.80	0.55	0.004689	0.074545	-
Rv2997	-	16	125.6	135.0	145.0	124.2	141.1	96.7	-0.026	0.075	0.175	-0.041	0.136	-0.387	158.6	166.1	193.4	170.3	196.3	128.9	0.79	0.81	0.75	0.73	0.72	0.75	0.865357	1.000000	-
Rv2998	-	5	86.5	110.0	141.3	100.3	93.7	131.7	-0.337	-0.007	0.340	-0.134	-0.228	0.242	108.1	122.2	157.0	100.3	93.7	131.7	0.80	0.90	0.90	1.00	1.00	1.00	0.367783	1.000000	-
Rv2998A	-	1	0.0	26.0	0.0	0.0	0.0	0.0	-0.902	1.733	-0.902	-0.902	-0.902	-0.902	0.0	52.1	0.0	0.0	0.0	0.0	0.00	0.50	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv2999	lppY	11	108.4	72.4	115.5	98.1	74.8	80.9	0.231	-0.321	0.317	0.093	-0.277	-0.171	149.1	93.6	181.5	161.9	137.1	118.6	0.73	0.77	0.64	0.61	0.55	0.68	0.617919	1.000000	-
Rv3000	-	8	79.4	96.6	118.8	104.0	75.8	85.9	-0.222	0.047	0.331	0.148	-0.285	-0.115	119.1	154.6	172.8	124.8	101.0	124.9	0.67	0.62	0.69	0.83	0.75	0.69	0.782742	1.000000	-
Rv3001c	ilvC	12	2.9	0.4	2.6	2.3	0.0	2.4	0.228	-0.320	0.161	0.110	-0.440	0.128	17.7	10.4	31.0	27.8	0.0	11.6	0.17	0.04	0.08	0.08	0.00	0.21	0.103155	0.749708	-
Rv3002c	ilvH	4	16.9	15.3	16.5	11.7	12.9	27.9	0.005	-0.107	-0.025	-0.386	-0.292	0.588	50.8	24.5	33.0	23.5	34.3	37.2	0.33	0.62	0.50	0.50	0.38	0.75	0.529765	1.000000	-
Rv3003c	ilvB1	15	8.7	9.9	8.3	23.6	10.6	11.2	-0.314	-0.191	-0.360	0.744	-0.126	-0.077	26.2	24.9	27.6	36.6	26.6	27.9	0.33	0.40	0.30	0.64	0.40	0.40	0.048857	0.464875	-
Rv3004	cfp6	3	105.7	56.1	94.6	95.4	55.6	56.9	0.426	-0.431	0.274	0.285	-0.443	-0.412	105.7	84.2	113.5	95.4	66.7	85.4	1.00	0.67	0.83	1.00	0.83	0.67	0.473013	1.000000	-
Rv3005c	-	19	110.1	109.6	129.4	125.6	126.0	103.7	-0.088	-0.095	0.135	0.094	0.098	-0.171	123.1	112.5	144.6	132.6	140.8	103.7	0.89	0.97	0.89	0.95	0.89	1.00	0.342813	1.000000	-
Rv3006	lppZ	16	1.0	1.9	1.2	0.0	2.5	1.6	-0.094	0.111	-0.041	-0.347	0.247	0.054	23.0	15.0	12.6	0.0	13.6	17.1	0.04	0.12	0.09	0.00	0.19	0.09	0.107350	0.773153	-
Rv3007c	-	8	93.2	111.4	109.6	117.3	128.5	141.3	-0.312	-0.066	-0.089	0.005	0.132	0.263	111.8	127.3	125.3	140.8	146.9	141.3	0.83	0.88	0.88	0.83	0.88	1.00	0.658786	1.000000	-
Rv3008	-	15	157.4	187.8	172.9	166.0	169.6	184.6	-0.133	0.115	-0.002	-0.058	-0.028	0.091	177.0	201.2	199.4	169.8	169.6	191.0	0.89	0.93	0.87	0.98	1.00	0.97	0.502920	1.000000	-
Rv3009c	gatB	17	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3010c	pfkA	8	78.0	128.7	136.1	114.6	105.7	145.8	-0.569	0.118	0.196	-0.042	-0.154	0.292	98.6	128.7	181.4	125.1	105.7	145.8	0.79	1.00	0.75	0.92	1.00	1.00	0.099780	0.742766	-
Rv3011c	gatA	20	0.0	0.0	0.0	0.2	0.0	0.2	-0.023	-0.023	-0.023	0.045	-0.023	0.044	0.0	0.0	0.0	14.4	0.0	9.4	0.00	0.00	0.00	0.02	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3012c	gatC	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3013	-	3	149.8	142.8	178.9	131.4	168.4	110.8	0.026	-0.040	0.275	-0.156	0.190	-0.393	168.5	142.8	214.7	131.4	168.4	110.8	0.89	1.00	0.83	1.00	1.00	1.00	0.564562	1.000000	-
Rv3014c	ligA	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3015c	-	9	204.6	200.3	164.4	187.9	197.6	194.8	0.092	0.062	-0.215	-0.028	0.043	0.023	240.2	257.5	185.0	187.9	222.3	206.3	0.85	0.78	0.89	1.00	0.89	0.94	0.403737	1.000000	-
Rv3016	lpqA	10	69.8	64.5	66.6	69.4	75.1	89.0	-0.049	-0.155	-0.111	-0.057	0.049	0.280	80.5	64.5	70.2	74.4	83.4	93.6	0.87	1.00	0.95	0.93	0.90	0.95	0.815214	1.000000	-
Rv3017c	esxQ	8	186.7	184.2	205.8	145.9	169.6	206.5	0.027	0.008	0.164	-0.318	-0.107	0.169	213.3	210.5	235.2	194.5	193.8	236.0	0.88	0.88	0.88	0.75	0.88	0.88	0.977540	1.000000	-
Rv3018c	PPE46	27	134.2	110.0	123.2	133.3	131.7	121.2	0.092	-0.183	-0.026	0.082	0.066	-0.049	301.9	228.5	277.3	263.3	296.4	233.8	0.44	0.48	0.44	0.51	0.44	0.52	0.996448	1.000000	-
Rv3018A	PE27A	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3019c	esxR	8	19.8	30.6	28.5	32.1	31.9	46.1	-0.559	-0.036	-0.123	0.023	0.016	0.486	29.7	40.8	38.0	45.3	39.3	49.2	0.67	0.75	0.75	0.71	0.81	0.94	0.382590	1.000000	-
Rv3020c	esxS	7	72.5	71.4	79.2	54.2	59.7	90.4	0.024	0.003	0.144	-0.365	-0.237	0.323	108.7	124.9	100.8	71.1	83.6	90.4	0.67	0.57	0.79	0.76	0.71	1.00	0.249335	1.000000	-
Rv3021c	PPE47	21	87.7	65.8	82.5	72.1	88.4	68.5	0.168	-0.220	0.085	-0.098	0.179	-0.167	276.3	172.8	216.6	174.6	185.6	191.8	0.32	0.38	0.38	0.41	0.48	0.36	0.952715	1.000000	-
Rv3022c	PPE48	5	196.3	159.2	174.3	179.7	205.7	208.4	0.066	-0.227	-0.101	-0.058	0.132	0.150	210.3	159.2	174.3	179.7	205.7	208.4	0.93	1.00	1.00	1.00	1.00	1.00	0.955352	1.000000	-
Rv3022A	PE29	6	200.2	217.3	219.6	183.6	200.9	185.9	-0.007	0.108	0.123	-0.129	-0.003	-0.111	200.2	217.3	219.6	183.6	200.9	185.9	1.00	1.00	1.00	1.00	1.00	1.00	0.994250	1.000000	-
Rv3023c	-	15	259.9	256.4	278.0	258.5	251.2	245.4	0.009	-0.010	0.104	0.001	-0.039	-0.072	278.5	284.9	278.0	258.5	251.2	253.9	0.93	0.90	1.00	1.00	1.00	0.97	0.345827	1.000000	-
Rv3024c	trmU	13	61.6	36.3	67.0	48.9	73.1	25.7	0.222	-0.466	0.334	-0.082	0.451	-0.895	85.8	52.5	102.4	70.7	95.0	37.1	0.72	0.69	0.65	0.69	0.77	0.69	0.014577	0.186240	-
Rv3025c	iscS	15	17.3	14.6	26.7	10.1	13.3	10.3	0.128	-0.058	0.637	-0.431	-0.155	-0.412	35.3	31.2	61.6	21.7	24.9	20.6	0.49	0.47	0.43	0.47	0.53	0.50	0.000454	0.009843	-
Rv3026c	-	10	209.3	184.1	200.8	200.8	192.8	190.7	0.089	-0.091	0.031	0.031	-0.026	-0.042	216.5	204.5	236.3	223.1	214.2	211.9	0.97	0.90	0.85	0.90	0.90	0.90	0.984360	1.000000	-
Rv3027c	-	17	205.2	203.4	213.4	222.9	207.2	222.7	-0.049	-0.061	0.006	0.067	-0.035	0.066	209.3	223.1	219.9	222.9	213.5	236.6	0.98	0.91	0.97	1.00	0.97	0.94	0.540522	1.000000	-
Rv3028c	fixB	9	10.1	1.7	9.1	0.0	0.5	0.6	0.799	-0.369	0.703	-0.794	-0.656	-0.630	22.7	10.3	27.3	0.0	9.0	10.8	0.44	0.17	0.33	0.00	0.06	0.06	0.000011	0.000340	-
Rv3029c	fixA	6	11.0	0.0	11.0	0.0	0.0	0.0	0.886	-0.794	0.883	-0.794	-0.794	-0.794	33.1	0.0	26.4	0.0	0.0	0.0	0.33	0.00	0.42	0.00	0.00	0.00	0.000038	0.001068	-
Rv3030	-	10	12.4	10.7	1.9	3.3	8.7	5.5	0.526	0.376	-0.809	-0.543	0.187	-0.207	53.1	35.6	12.6	32.9	35.0	27.3	0.23	0.30	0.15	0.10	0.25	0.20	0.304215	1.000000	-
Rv3031	-	20	3.6	0.8	3.5	0.2	0.4	0.8	0.396	-0.178	0.375	-0.324	-0.284	-0.177	18.0	15.4	17.3	13.0	14.5	15.6	0.20	0.05	0.20	0.02	0.03	0.05	0.003693	0.061650	-
Rv3032	-	9	16.6	5.6	20.9	9.8	17.3	2.2	0.341	-0.682	0.601	-0.211	0.388	-1.252	37.4	16.9	53.7	37.6	28.4	13.0	0.44	0.33	0.39	0.26	0.61	0.17	0.009210	0.131412	-
Rv3033	-	3	86.5	84.9	66.9	88.2	72.2	92.8	0.075	0.049	-0.273	0.101	-0.171	0.169	129.8	84.9	80.3	99.3	108.3	92.8	0.67	1.00	0.83	0.89	0.67	1.00	0.733440	1.000000	-
Rv3034c	-	12	119.4	115.2	106.1	115.3	119.7	101.9	0.077	0.027	-0.086	0.029	0.080	-0.142	477.7	460.7	424.4	461.4	478.6	407.5	0.25	0.25	0.25	0.25	0.25	0.25	0.999987	1.000000	-
Rv3035	-	15	1.4	0.3	1.3	0.0	5.8	0.4	-0.028	-0.290	-0.059	-0.383	0.725	-0.283	15.7	10.0	18.9	0.0	15.8	10.8	0.09	0.03	0.07	0.00	0.37	0.03	0.000599	0.012723	-
Rv3036c	TB22.2	14	278.4	230.6	230.9	250.9	219.5	253.4	0.187	-0.079	-0.078	0.040	-0.149	0.054	285.2	230.6	230.9	257.0	219.5	253.4	0.98	1.00	1.00	0.98	1.00	1.00	0.920611	1.000000	-
Rv3037c	-	14	262.6	203.7	270.5	231.9	236.3	207.2	0.155	-0.204	0.197	-0.021	0.006	-0.180	306.4	228.1	291.3	263.3	264.6	241.7	0.86	0.89	0.93	0.88	0.89	0.86	0.988934	1.000000	-
Rv3038c	-	10	5.5	0.5	3.1	11.2	29.8	0.0	-0.352	-1.276	-0.714	0.277	1.383	-1.418	20.5	10.4	15.7	21.0	39.8	0.0	0.27	0.05	0.20	0.53	0.75	0.00	0.000000	0.000000	-
Rv3039c	echA17	10	61.2	73.8	90.4	85.6	80.9	73.9	-0.319	-0.069	0.207	0.133	0.055	-0.066	108.1	122.9	139.0	107.0	89.9	113.7	0.57	0.60	0.65	0.80	0.90	0.65	0.458986	1.000000	-
Rv3040c	-	9	118.2	152.4	158.4	139.7	163.8	152.3	-0.307	0.046	0.100	-0.075	0.147	0.045	118.2	152.4	158.4	139.7	163.8	152.3	1.00	1.00	1.00	1.00	1.00	1.00	0.848330	1.000000	-
Rv3041c	-	8	225.8	244.8	217.0	225.8	261.4	243.4	-0.065	0.050	-0.121	-0.064	0.142	0.041	258.1	244.8	217.0	225.8	261.4	243.4	0.88	1.00	1.00	1.00	1.00	1.00	0.563076	1.000000	-
Rv3042c	serB2	11	28.2	33.1	24.4	46.9	46.2	28.1	-0.250	-0.051	-0.426	0.395	0.375	-0.254	51.7	42.9	38.3	53.4	53.5	32.6	0.55	0.77	0.64	0.88	0.86	0.86	0.082043	0.666702	-
Rv3043c	ctaD	22	0.7	0.5	1.6	0.2	0.0	0.2	0.038	-0.014	0.248	-0.088	-0.144	-0.075	14.8	10.4	17.2	13.0	0.0	10.8	0.05	0.05	0.09	0.02	0.00	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3044	fecB	15	8.2	11.8	2.1	5.2	19.4	2.0	0.006	0.359	-0.886	-0.369	0.897	-0.902	24.5	27.3	15.7	23.2	38.9	15.2	0.33	0.43	0.13	0.22	0.50	0.13	0.000216	0.005067	-
Rv3045	adhC	18	149.6	180.6	162.4	143.0	156.5	145.1	-0.061	0.204	0.054	-0.123	0.003	-0.103	158.4	185.8	182.6	151.4	156.5	153.7	0.94	0.97	0.89	0.94	1.00	0.94	0.614156	1.000000	-
Rv3046c	-	2	68.9	38.2	57.9	48.5	73.1	57.7	0.245	-0.531	0.013	-0.223	0.324	0.008	68.9	50.9	57.9	58.1	73.1	57.7	1.00	0.75	1.00	0.83	1.00	1.00	0.803102	1.000000	-
Rv3047c	-	5	135.0	169.8	108.9	165.0	144.2	130.0	-0.072	0.248	-0.370	0.208	0.020	-0.124	135.0	169.8	108.9	165.0	144.2	130.0	1.00	1.00	1.00	1.00	1.00	1.00	0.530334	1.000000	-
Rv3048c	nrdF	21	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3049c	-	29	179.1	158.2	182.3	128.4	127.7	151.8	0.206	0.032	0.231	-0.259	-0.266	-0.025	187.7	163.8	199.5	137.9	132.3	154.5	0.95	0.97	0.91	0.93	0.97	0.98	0.337192	1.000000	-
Rv3050c	-	7	61.8	76.3	54.4	74.8	74.5	63.4	-0.118	0.165	-0.289	0.138	0.133	-0.085	76.4	97.1	76.1	82.7	86.9	73.9	0.81	0.79	0.71	0.90	0.86	0.86	0.959368	1.000000	-
Rv3051c	nrdE	50	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3052c	nrdI	13	18.7	24.6	32.3	0.0	0.0	32.0	0.049	0.369	0.701	-2.197	-2.197	0.689	38.4	33.7	52.5	0.0	0.0	41.6	0.49	0.73	0.62	0.00	0.00	0.77	0.000000	0.000000	-
Rv3053c	nrdH	8	0.0	1.3	0.0	0.0	0.0	0.0	-0.061	0.273	-0.061	-0.061	-0.061	-0.061	0.0	20.9	0.0	0.0	0.0	0.0	0.00	0.06	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3054c	-	5	226.8	242.2	282.4	241.5	238.0	282.7	-0.150	-0.058	0.160	-0.062	-0.082	0.161	243.0	242.2	313.7	258.7	264.5	282.7	0.93	1.00	0.90	0.93	0.90	1.00	0.978547	1.000000	-
Rv3055	-	7	125.3	168.6	156.9	177.7	171.9	121.2	-0.283	0.131	0.030	0.204	0.157	-0.330	125.3	168.6	156.9	177.7	171.9	141.3	1.00	1.00	1.00	1.00	1.00	0.86	0.243763	1.000000	-
Rv3056	dinP	18	194.8	216.3	215.3	215.8	206.3	193.7	-0.086	0.062	0.055	0.059	-0.005	-0.094	223.8	243.4	234.9	248.0	239.6	232.4	0.87	0.89	0.92	0.87	0.86	0.83	0.966738	1.000000	-
Rv3057c	-	16	110.1	169.8	147.8	231.7	251.9	140.6	-0.648	-0.045	-0.239	0.393	0.511	-0.309	117.4	175.3	152.6	236.6	251.9	140.6	0.94	0.97	0.97	0.98	1.00	1.00	0.000054	0.001440	-
Rv3058c	-	9	143.0	163.2	138.6	135.8	119.2	150.8	0.012	0.197	-0.031	-0.060	-0.241	0.086	160.8	163.2	155.9	141.0	119.2	159.6	0.89	1.00	0.89	0.96	1.00	0.94	0.811239	1.000000	-
Rv3059	cyp136	21	201.7	176.5	179.0	172.9	173.6	199.8	0.130	-0.058	-0.038	-0.087	-0.081	0.117	244.3	200.4	208.8	201.7	197.1	215.2	0.83	0.88	0.86	0.86	0.88	0.93	0.989651	1.000000	-
Rv3060c	-	24	139.9	142.2	140.2	146.8	151.3	149.8	-0.050	-0.027	-0.047	0.017	0.059	0.045	165.1	155.1	156.5	162.6	165.1	175.4	0.85	0.92	0.90	0.90	0.92	0.85	0.954277	1.000000	-
Rv3061c	fadE22	21	150.8	152.5	171.4	167.0	161.8	151.4	-0.075	-0.060	0.104	0.068	0.023	-0.070	161.0	177.9	184.6	175.4	174.3	167.3	0.94	0.86	0.93	0.95	0.93	0.90	0.838130	1.000000	-
Rv3062	ligB	18	159.1	152.5	174.7	141.7	113.6	145.2	0.103	0.044	0.234	-0.058	-0.366	-0.025	199.7	177.1	202.8	182.2	136.3	163.4	0.80	0.86	0.86	0.78	0.83	0.89	0.904809	1.000000	-
Rv3063	cstA	29	213.6	217.0	199.0	212.6	205.7	219.9	0.015	0.038	-0.084	0.009	-0.038	0.056	232.3	242.0	209.9	228.4	216.9	236.1	0.92	0.90	0.95	0.93	0.95	0.93	0.959076	1.000000	-
Rv3064c	-	9	73.0	81.9	67.1	84.4	75.5	97.5	-0.123	0.034	-0.236	0.075	-0.076	0.271	85.7	92.2	92.9	103.6	90.6	117.0	0.85	0.89	0.72	0.81	0.83	0.83	0.952709	1.000000	-
Rv3065	mmr	6	192.3	141.7	161.2	142.4	133.5	114.3	0.371	-0.057	0.124	-0.050	-0.139	-0.355	192.3	141.7	175.9	150.8	145.7	124.7	1.00	1.00	0.92	0.94	0.92	0.92	0.866156	1.000000	-
Rv3066	-	10	179.4	175.9	147.5	98.2	111.0	179.8	0.263	0.235	-0.010	-0.573	-0.405	0.266	192.2	195.4	184.4	122.8	123.4	199.7	0.93	0.90	0.80	0.80	0.90	0.90	0.334099	1.000000	-
Rv3067	-	8	92.6	94.6	84.1	76.9	102.0	80.4	0.063	0.093	-0.068	-0.191	0.196	-0.130	92.6	94.6	84.1	80.2	102.0	80.4	1.00	1.00	1.00	0.96	1.00	1.00	0.746585	1.000000	-
Rv3068c	pgmA	29	179.4	159.0	156.1	175.3	149.5	176.7	0.108	-0.060	-0.086	0.076	-0.146	0.087	208.0	184.5	181.1	190.6	173.5	189.8	0.86	0.86	0.86	0.92	0.86	0.93	0.933583	1.000000	-
Rv3069	ccrB	4	50.8	36.9	21.1	45.3	40.6	47.2	0.300	-0.113	-0.798	0.151	0.009	0.205	76.2	36.9	28.1	54.4	40.6	47.2	0.67	1.00	0.75	0.83	1.00	1.00	0.053270	0.495885	-
Rv3070	ccrB	8	118.8	100.2	120.9	121.9	107.7	84.9	0.118	-0.116	0.142	0.153	-0.017	-0.343	123.9	123.4	138.1	139.3	123.1	90.6	0.96	0.81	0.88	0.88	0.88	0.94	0.905113	1.000000	-
Rv3071	-	13	110.2	114.1	129.3	107.4	89.4	116.6	-0.012	0.036	0.209	-0.047	-0.300	0.066	143.3	141.2	160.1	139.6	96.8	131.8	0.77	0.81	0.81	0.77	0.92	0.88	0.601677	1.000000	-
Rv3072c	-	9	116.6	82.7	94.7	96.8	102.7	74.3	0.288	-0.184	0.001	0.031	0.112	-0.329	121.1	87.6	106.6	96.8	102.7	83.6	0.96	0.94	0.89	1.00	1.00	0.89	0.588798	1.000000	-
Rv3073c	-	4	197.6	149.9	178.6	164.7	180.2	192.4	0.153	-0.235	0.011	-0.103	0.024	0.115	197.6	239.8	178.6	179.7	180.2	192.4	1.00	0.62	1.00	0.92	1.00	1.00	0.243981	1.000000	-
Rv3074	-	14	180.5	199.2	209.8	191.6	170.4	171.5	-0.051	0.087	0.160	0.033	-0.132	-0.123	204.9	242.4	209.8	206.4	183.5	184.7	0.88	0.82	1.00	0.93	0.93	0.93	0.343125	1.000000	-
Rv3075c	-	12	112.7	126.0	99.1	95.0	120.4	119.8	0.006	0.161	-0.171	-0.228	0.098	0.091	126.8	144.1	113.3	114.1	131.3	130.7	0.89	0.88	0.88	0.83	0.92	0.92	0.979018	1.000000	-
Rv3076	-	5	135.1	154.1	120.7	91.9	100.5	110.1	0.179	0.363	0.022	-0.353	-0.230	-0.104	168.8	192.6	150.8	114.9	125.6	122.4	0.80	0.80	0.80	0.80	0.80	0.90	0.966123	1.000000	-
Rv3077	-	34	187.7	162.1	171.7	177.5	169.1	156.0	0.133	-0.072	0.008	0.055	-0.013	-0.126	225.2	190.0	194.6	188.6	191.7	186.1	0.83	0.85	0.88	0.94	0.88	0.84	0.559911	1.000000	-
Rv3078	hab	5	52.7	47.5	85.8	59.5	57.0	83.3	-0.265	-0.399	0.390	-0.104	-0.160	0.350	56.4	47.5	95.4	63.7	71.3	83.3	0.93	1.00	0.90	0.93	0.80	1.00	0.147250	0.938540	-
Rv3079c	-	15	121.2	107.6	91.2	98.0	113.3	105.9	0.182	0.018	-0.209	-0.110	0.089	-0.004	139.9	124.1	119.0	113.1	136.0	132.4	0.87	0.87	0.77	0.87	0.83	0.80	0.960683	1.000000	-
Rv3080c	pknK	26	163.2	150.5	140.1	153.2	140.9	134.9	0.145	0.031	-0.068	0.057	-0.060	-0.121	169.7	156.5	155.0	161.5	140.9	140.3	0.96	0.96	0.90	0.95	1.00	0.96	0.684965	1.000000	-
Rv3081	-	16	68.1	72.9	76.6	78.5	56.9	63.7	-0.027	0.066	0.133	0.165	-0.267	-0.116	81.7	89.7	98.1	89.7	75.8	72.8	0.83	0.81	0.78	0.88	0.75	0.88	0.869728	1.000000	-
Rv3082c	virS	16	136.5	139.9	140.2	109.8	93.4	126.0	0.131	0.164	0.168	-0.172	-0.394	0.019	156.1	186.5	166.2	135.1	119.5	183.2	0.88	0.75	0.84	0.81	0.78	0.69	0.230142	1.000000	-
Rv3083	-	25	157.1	157.4	176.7	153.7	159.7	148.4	-0.015	-0.013	0.150	-0.046	0.008	-0.095	173.3	163.9	192.1	160.1	166.4	151.4	0.91	0.96	0.92	0.96	0.96	0.98	0.938925	1.000000	-
Rv3084	lipR	11	121.1	85.2	106.1	107.4	118.0	99.1	0.182	-0.301	-0.001	0.016	0.146	-0.094	124.9	104.2	116.7	107.4	118.0	109.1	0.97	0.82	0.91	1.00	1.00	0.91	0.214616	1.000000	-
Rv3085	-	4	80.5	82.9	114.1	88.7	51.5	108.7	-0.117	-0.077	0.361	0.014	-0.716	0.294	107.4	110.6	130.4	106.4	51.5	108.7	0.75	0.75	0.88	0.83	1.00	1.00	0.297963	1.000000	-
Rv3086	adhD	9	108.9	134.2	128.1	118.4	123.3	125.6	-0.170	0.120	0.056	-0.054	0.003	0.028	140.0	161.1	192.2	139.0	130.6	132.9	0.78	0.83	0.67	0.85	0.94	0.94	0.706898	1.000000	-
Rv3087	-	12	305.9	258.7	253.2	277.1	215.3	268.8	0.213	-0.024	-0.055	0.073	-0.283	0.030	305.9	258.7	253.2	277.1	215.3	268.8	1.00	1.00	1.00	1.00	1.00	1.00	0.422001	1.000000	-
Rv3088	-	13	122.2	111.4	139.7	112.6	148.3	125.1	-0.049	-0.176	0.137	-0.162	0.220	-0.016	132.4	144.9	172.9	125.4	160.6	141.4	0.92	0.77	0.81	0.90	0.92	0.88	0.409661	1.000000	-
Rv3089	fadD13	20	130.9	107.3	129.0	118.3	132.9	109.7	0.105	-0.170	0.085	-0.035	0.126	-0.140	151.1	130.0	166.4	131.4	156.3	125.3	0.87	0.82	0.78	0.90	0.85	0.88	0.870358	1.000000	-
Rv3090	-	7	192.2	191.1	159.3	198.7	196.2	215.3	0.000	-0.007	-0.263	0.047	0.029	0.160	192.2	191.1	171.6	198.7	196.2	215.3	1.00	1.00	0.93	1.00	1.00	1.00	0.863967	1.000000	-
Rv3091	-	15	231.0	201.6	235.9	242.4	220.6	223.7	0.032	-0.160	0.061	0.100	-0.033	-0.014	247.6	216.0	252.7	242.4	236.4	239.6	0.93	0.93	0.93	1.00	0.93	0.93	0.796057	1.000000	-
Rv3092c	-	9	397.6	371.7	418.8	395.2	336.3	362.5	0.063	-0.033	0.137	0.055	-0.175	-0.069	397.6	371.7	418.8	395.2	378.4	383.8	1.00	1.00	1.00	1.00	0.89	0.94	0.544219	1.000000	-
Rv3093c	-	13	191.2	197.6	227.4	181.2	179.6	177.5	-0.009	0.037	0.235	-0.085	-0.097	-0.113	207.1	214.1	246.4	214.1	194.6	177.5	0.92	0.92	0.92	0.85	0.92	1.00	0.720131	1.000000	-
Rv3094c	-	10	286.0	231.9	275.0	231.5	238.0	223.7	0.204	-0.093	0.148	-0.096	-0.056	-0.144	317.7	331.2	305.6	257.2	297.4	235.4	0.90	0.70	0.90	0.90	0.80	0.95	0.400098	1.000000	-
Rv3095	-	6	243.7	257.4	216.8	277.8	210.4	288.2	-0.031	0.047	-0.196	0.154	-0.238	0.207	258.1	257.4	236.5	277.8	210.4	288.2	0.94	1.00	0.92	1.00	1.00	1.00	0.880631	1.000000	-
Rv3096	-	14	254.7	293.1	236.8	249.6	265.0	255.3	-0.024	0.175	-0.127	-0.053	0.032	-0.021	260.9	293.1	255.1	255.7	274.8	264.8	0.98	1.00	0.93	0.98	0.96	0.96	0.954786	1.000000	-
Rv3097c	PE_PGRS63	24	168.8	164.7	159.9	166.4	163.6	181.1	0.011	-0.023	-0.064	-0.009	-0.032	0.111	178.7	164.7	159.9	173.6	167.1	181.1	0.94	1.00	1.00	0.96	0.98	1.00	0.481811	1.000000	-
Rv3098c	-	8	116.2	122.0	120.7	113.4	107.1	128.9	-0.022	0.046	0.031	-0.055	-0.135	0.122	126.7	122.0	120.7	123.8	122.3	171.8	0.92	1.00	1.00	0.92	0.88	0.75	0.212202	1.000000	-
Rv3099c	-	5	319.7	327.9	362.5	365.1	326.6	376.4	-0.114	-0.078	0.065	0.075	-0.084	0.118	319.7	327.9	362.5	365.1	326.6	376.4	1.00	1.00	1.00	1.00	1.00	1.00	0.976571	1.000000	-
Rv3100c	smpB	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3101c	ftsX	14	26.2	38.6	31.9	52.6	46.6	32.0	-0.463	0.021	-0.221	0.423	0.264	-0.217	50.0	67.5	63.7	100.4	68.6	47.1	0.52	0.57	0.50	0.52	0.68	0.68	0.089813	0.697233	-
Rv3102c	ftsE	6	58.1	64.3	61.6	56.1	74.0	53.0	-0.069	0.066	0.008	-0.115	0.256	-0.190	87.1	70.1	82.1	67.3	80.7	53.0	0.67	0.92	0.75	0.83	0.92	1.00	0.454533	1.000000	-
Rv3103c	-	7	54.8	52.2	58.6	55.4	63.7	62.1	-0.071	-0.133	0.018	-0.057	0.129	0.096	63.9	66.5	74.6	68.4	74.3	79.1	0.86	0.79	0.79	0.81	0.86	0.79	0.993615	1.000000	-
Rv3104c	-	9	211.5	197.1	241.4	182.0	241.8	209.3	-0.016	-0.114	0.171	-0.227	0.173	-0.030	219.6	197.1	255.6	204.7	256.0	251.1	0.96	1.00	0.94	0.89	0.94	0.83	0.619442	1.000000	-
Rv3105c	prfB	15	0.0	0.0	0.0	0.0	0.3	0.0	-0.014	-0.014	-0.014	-0.014	0.070	-0.014	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.03	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3106	fprA	16	107.7	122.1	118.3	112.3	123.5	114.6	-0.108	0.066	0.022	-0.049	0.082	-0.021	132.5	150.2	140.2	128.4	131.7	126.5	0.81	0.81	0.84	0.88	0.94	0.91	0.947041	1.000000	-
Rv3107c	agpS	21	95.6	85.2	98.3	86.8	104.8	97.4	0.013	-0.144	0.052	-0.119	0.140	0.039	115.8	94.2	108.7	95.9	112.9	97.4	0.83	0.90	0.90	0.90	0.93	1.00	0.245266	1.000000	-
Rv3108	-	6	67.1	69.8	71.4	79.1	84.5	73.7	-0.136	-0.083	-0.053	0.085	0.175	-0.011	93.0	83.8	85.7	94.9	126.8	88.4	0.72	0.83	0.83	0.83	0.67	0.83	0.864279	1.000000	-
Rv3109	moaA1	34	21.2	22.4	29.0	39.3	37.7	43.2	-0.504	-0.437	-0.126	0.253	0.203	0.375	43.2	49.2	58.1	59.8	59.7	73.4	0.49	0.46	0.50	0.66	0.63	0.59	0.011967	0.158629	-
Rv3110	moaB1	9	94.6	91.8	93.1	105.0	106.9	107.3	-0.074	-0.113	-0.095	0.070	0.095	0.100	127.7	137.8	104.7	123.2	160.3	137.9	0.74	0.67	0.89	0.85	0.67	0.78	0.526011	1.000000	-
Rv3111	moaC	13	7.2	4.3	4.3	4.4	7.4	8.6	0.148	-0.244	-0.241	-0.236	0.166	0.299	23.4	16.0	22.5	17.0	16.0	14.8	0.31	0.27	0.19	0.26	0.46	0.58	0.121621	0.828100	-
Rv3112	moaD1	5	15.4	21.4	8.1	13.1	11.7	12.8	0.119	0.492	-0.513	-0.049	-0.165	-0.077	38.4	42.8	27.2	19.7	23.5	18.3	0.40	0.50	0.30	0.67	0.50	0.70	0.230630	1.000000	-
Rv3113	-	7	23.2	43.5	26.3	28.4	26.2	33.0	-0.313	0.466	-0.165	-0.071	-0.171	0.114	40.7	46.8	36.8	39.8	45.8	46.2	0.57	0.93	0.71	0.71	0.57	0.71	0.490623	1.000000	-
Rv3114	-	8	63.6	52.4	72.3	88.3	62.4	35.8	0.025	-0.234	0.196	0.468	-0.002	-0.725	69.4	69.8	72.3	88.3	66.5	57.3	0.92	0.75	1.00	1.00	0.94	0.62	0.005991	0.092293	-
Rv3115	-	15	248.7	252.1	283.0	265.7	241.8	235.6	-0.032	-0.013	0.151	0.061	-0.072	-0.109	279.8	280.1	292.8	265.7	241.8	235.6	0.89	0.90	0.97	1.00	1.00	1.00	0.170935	1.000000	-
Rv3116	moeB2	25	102.4	108.9	100.9	103.8	94.2	117.5	-0.030	0.056	-0.050	-0.011	-0.144	0.160	125.9	123.8	136.3	114.5	114.9	127.7	0.81	0.88	0.74	0.91	0.82	0.92	0.560993	1.000000	-
Rv3117	cysA3	14	165.1	209.4	182.5	203.6	196.2	204.4	-0.223	0.111	-0.082	0.072	0.019	0.077	169.2	209.4	182.5	203.6	196.2	204.4	0.98	1.00	1.00	1.00	1.00	1.00	0.892821	1.000000	-
Rv3118	sseC1	2	277.6	318.3	283.0	329.7	316.6	204.4	-0.053	0.141	-0.026	0.191	0.133	-0.486	277.6	318.3	283.0	329.7	316.6	204.4	1.00	1.00	1.00	1.00	1.00	1.00	0.432608	1.000000	-
Rv3119	moaE1	10	84.7	90.8	92.8	94.2	104.5	99.7	-0.149	-0.054	-0.024	-0.004	0.139	0.074	84.7	90.8	97.7	94.2	104.5	99.7	1.00	1.00	0.95	1.00	1.00	1.00	0.739359	1.000000	-
Rv3120	-	9	64.6	70.5	73.0	71.5	62.0	82.7	-0.122	-0.004	0.042	0.015	-0.175	0.212	79.2	79.3	93.8	77.2	79.8	106.3	0.81	0.89	0.78	0.93	0.78	0.78	0.813817	1.000000	-
Rv3121	cyp141	23	102.2	114.7	96.0	100.4	102.6	103.7	-0.014	0.145	-0.101	-0.038	-0.008	0.005	150.1	164.9	142.4	130.8	134.9	144.5	0.68	0.70	0.67	0.77	0.76	0.72	0.986875	1.000000	-
Rv3122	-	5	504.5	430.7	467.8	488.9	468.5	463.2	0.099	-0.126	-0.008	0.054	-0.006	-0.023	504.5	430.7	467.8	488.9	468.5	463.2	1.00	1.00	1.00	1.00	1.00	1.00	0.996854	1.000000	-
Rv3123	-	4	194.7	241.9	184.0	199.2	159.3	158.8	0.037	0.343	-0.043	0.069	-0.244	-0.249	259.7	276.5	210.2	217.3	212.4	211.7	0.75	0.88	0.88	0.92	0.75	0.75	0.964867	1.000000	-
Rv3124	-	27	35.9	40.5	47.3	46.6	56.4	48.3	-0.313	-0.159	0.042	0.022	0.272	0.067	52.0	57.6	67.3	65.1	78.1	57.9	0.69	0.70	0.70	0.72	0.72	0.83	0.322759	1.000000	-
Rv3125c	PPE49	21	142.0	119.5	135.5	125.3	133.7	125.8	0.120	-0.120	0.054	-0.055	0.036	-0.048	157.0	135.7	167.4	133.8	140.4	135.5	0.90	0.88	0.81	0.94	0.95	0.93	0.822490	1.000000	-
Rv3126c	-	2	54.5	33.0	43.6	29.7	56.4	47.2	0.279	-0.369	-0.014	-0.501	0.322	0.090	54.5	44.0	43.6	29.7	75.1	63.0	1.00	0.75	1.00	1.00	0.75	0.75	0.164087	0.995236	-
Rv3127	-	16	41.8	41.8	39.5	40.5	33.5	48.2	0.027	0.030	-0.045	-0.011	-0.252	0.213	87.2	83.7	84.2	81.1	76.6	90.7	0.48	0.50	0.47	0.50	0.44	0.53	0.999378	1.000000	-
Rv3129	-	4	52.0	20.5	46.0	55.7	70.8	36.6	0.134	-1.026	-0.025	0.226	0.545	-0.322	69.3	23.4	61.4	83.6	80.9	58.5	0.75	0.88	0.75	0.67	0.88	0.62	0.167756	0.996892	-
Rv3130c	-	24	133.4	93.2	124.5	131.4	98.6	105.0	0.214	-0.282	0.118	0.193	-0.204	-0.117	160.1	111.8	132.8	169.0	112.7	117.3	0.83	0.83	0.94	0.78	0.88	0.90	0.114025	0.795442	-
Rv3131	-	14	53.4	33.5	63.7	54.0	43.5	43.5	0.124	-0.477	0.358	0.139	-0.143	-0.146	80.1	44.7	93.9	75.7	50.8	57.9	0.67	0.75	0.68	0.71	0.86	0.75	0.197346	1.000000	-
Rv3132c	devS	29	76.8	69.2	87.0	77.7	71.1	62.8	0.049	-0.093	0.218	0.064	-0.056	-0.222	101.3	97.8	112.1	102.4	85.9	72.9	0.76	0.71	0.78	0.76	0.83	0.86	0.534933	1.000000	-
Rv3133c	devR	11	166.1	113.9	162.7	141.3	137.0	145.3	0.196	-0.329	0.167	-0.030	-0.073	0.008	182.7	119.4	179.0	160.8	143.6	152.2	0.91	0.95	0.91	0.88	0.95	0.95	0.896037	1.000000	-
Rv3134c	-	5	136.8	123.6	146.8	156.8	144.1	164.0	-0.085	-0.225	0.014	0.106	-0.012	0.169	146.5	123.6	163.1	156.8	144.1	164.0	0.93	1.00	0.90	1.00	1.00	1.00	0.892870	1.000000	-
Rv3135	PPE50	7	207.2	170.3	190.6	143.6	160.6	176.1	0.240	-0.036	0.122	-0.275	-0.118	0.011	241.7	183.4	205.3	150.7	187.4	205.5	0.86	0.93	0.93	0.95	0.86	0.86	0.773589	1.000000	-
Rv3136	PPE51	17	52.6	52.8	50.2	36.2	51.4	46.9	0.110	0.116	0.050	-0.373	0.080	-0.039	62.4	56.1	56.9	41.0	54.6	51.5	0.84	0.94	0.88	0.88	0.94	0.91	0.637983	1.000000	-
Rv3137	-	7	0.6	0.0	0.9	0.0	1.0	0.0	0.036	-0.115	0.124	-0.115	0.157	-0.115	11.6	0.0	12.6	0.0	14.5	0.0	0.05	0.00	0.07	0.00	0.07	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3138	pflA	21	76.9	73.6	88.7	74.7	76.2	93.1	-0.062	-0.121	0.131	-0.101	-0.076	0.197	93.2	75.4	106.4	84.1	84.2	97.7	0.83	0.98	0.83	0.89	0.90	0.95	0.343802	1.000000	-
Rv3139	fadE24	20	82.8	35.7	79.9	11.7	27.8	21.0	0.867	-0.241	0.818	-1.526	-0.554	-0.891	101.4	43.3	96.8	25.1	37.1	28.9	0.82	0.82	0.82	0.47	0.75	0.72	0.000000	0.000000	-
Rv3140	fadE23	18	31.9	15.8	53.6	3.9	8.8	11.4	0.511	-0.318	1.177	-1.533	-0.905	-0.663	50.7	27.0	83.8	14.2	17.7	19.5	0.63	0.58	0.64	0.28	0.50	0.58	0.000000	0.000000	-
Rv3141	fadB4	13	101.6	128.6	129.1	123.5	114.0	139.2	-0.260	0.065	0.071	0.009	-0.101	0.176	101.6	128.6	134.2	133.8	123.5	139.2	1.00	1.00	0.96	0.92	0.92	1.00	0.035179	0.369383	-
Rv3142c	-	9	46.1	55.3	59.3	52.3	44.6	40.6	-0.099	0.141	0.233	0.067	-0.141	-0.263	124.5	99.6	118.6	100.9	89.2	81.2	0.37	0.56	0.50	0.52	0.50	0.50	0.996921	1.000000	-
Rv3143	-	4	5.1	1.3	1.6	3.6	8.8	8.9	0.035	-0.662	-0.589	-0.196	0.481	0.495	20.5	10.0	12.6	21.8	23.5	14.3	0.25	0.12	0.12	0.17	0.38	0.62	0.274461	1.000000	-
Rv3144c	PPE52	15	255.9	247.1	227.5	274.5	237.4	223.5	0.065	0.016	-0.101	0.165	-0.041	-0.126	261.7	247.1	262.5	308.9	254.4	239.5	0.98	1.00	0.87	0.89	0.93	0.93	0.422391	1.000000	-
Rv3145	nuoA	10	204.5	209.9	222.0	244.0	207.9	192.5	-0.061	-0.024	0.055	0.189	-0.037	-0.145	204.5	209.9	222.0	244.0	207.9	192.5	1.00	1.00	1.00	1.00	1.00	1.00	0.899542	1.000000	-
Rv3146	nuoB	9	185.1	172.4	141.0	197.4	173.3	158.4	0.109	0.009	-0.272	0.200	0.017	-0.109	208.2	193.9	158.6	231.8	208.0	158.4	0.89	0.89	0.89	0.85	0.83	1.00	0.689565	1.000000	-
Rv3147	nuoC	12	90.5	90.8	93.8	83.5	89.4	86.5	0.021	0.026	0.070	-0.088	0.005	-0.040	98.7	99.1	107.2	94.0	93.3	90.3	0.92	0.92	0.88	0.89	0.96	0.96	0.996956	1.000000	-
Rv3148	nuoD	22	36.5	37.7	31.5	34.2	36.4	35.8	0.041	0.081	-0.143	-0.043	0.037	0.015	52.4	53.5	53.4	61.0	53.4	47.7	0.70	0.70	0.59	0.56	0.68	0.75	0.704320	1.000000	-
Rv3149	nuoE	9	299.3	281.6	325.8	302.0	255.0	221.8	0.090	0.004	0.210	0.102	-0.137	-0.334	310.8	281.6	345.0	302.0	255.0	221.8	0.96	1.00	0.94	1.00	1.00	1.00	0.851279	1.000000	-
Rv3150	nuoF	25	150.1	129.6	143.1	129.5	130.9	127.3	0.147	-0.058	0.080	-0.059	-0.043	-0.082	170.6	150.7	146.0	136.8	145.5	135.4	0.88	0.86	0.98	0.95	0.90	0.94	0.360650	1.000000	-
Rv3151	nuoG	29	104.3	77.2	108.3	104.2	100.2	86.4	0.103	-0.307	0.155	0.102	0.047	-0.155	135.4	101.8	136.6	124.2	126.3	100.2	0.77	0.76	0.79	0.84	0.79	0.86	0.633196	1.000000	-
Rv3152	nuoH	25	103.0	103.1	101.8	111.7	111.8	114.6	-0.061	-0.060	-0.077	0.051	0.052	0.087	104.4	103.1	108.3	116.4	114.1	114.6	0.99	1.00	0.94	0.96	0.98	1.00	0.359403	1.000000	-
Rv3153	nuoI	22	176.5	165.8	157.8	141.3	153.6	136.6	0.179	0.092	0.023	-0.132	-0.015	-0.178	208.0	182.4	192.9	166.5	187.8	171.8	0.85	0.91	0.82	0.85	0.82	0.80	0.918982	1.000000	-
Rv3154	nuoJ	9	175.3	156.9	163.0	163.2	155.7	115.2	0.173	0.018	0.071	0.074	0.008	-0.412	175.3	156.9	163.0	163.2	155.7	115.2	1.00	1.00	1.00	1.00	1.00	1.00	0.303432	1.000000	-
Rv3155	nuoK	5	46.7	64.2	42.4	36.3	60.2	50.2	-0.089	0.331	-0.214	-0.415	0.245	0.006	53.9	80.2	53.0	45.3	75.3	62.8	0.87	0.80	0.80	0.80	0.80	0.80	0.351254	1.000000	-
Rv3156	nuoL	29	115.4	132.8	123.5	134.4	118.9	115.6	-0.093	0.102	0.001	0.118	-0.052	-0.091	149.9	157.2	140.5	149.9	140.7	149.0	0.77	0.84	0.88	0.90	0.84	0.78	0.527286	1.000000	-
Rv3157	nuoM	31	76.5	62.3	70.7	62.9	63.3	64.0	0.187	-0.090	0.080	-0.076	-0.070	-0.053	98.9	77.2	84.3	79.1	76.9	73.5	0.77	0.81	0.84	0.80	0.82	0.87	0.925809	1.000000	-
Rv3158	nuoN	30	235.9	217.8	211.1	224.2	223.9	207.1	0.098	-0.014	-0.058	0.027	0.025	-0.086	252.8	229.3	218.4	246.1	231.6	218.0	0.93	0.95	0.97	0.91	0.97	0.95	0.902199	1.000000	-
Rv3159c	PPE53	23	146.5	132.9	105.9	119.8	94.8	112.6	0.292	0.156	-0.158	0.012	-0.310	-0.073	326.1	218.3	203.1	229.5	167.7	178.6	0.45	0.61	0.52	0.52	0.57	0.63	0.813716	1.000000	-
Rv3160c	-	7	41.4	43.6	22.4	19.5	19.0	49.8	0.303	0.370	-0.458	-0.619	-0.650	0.544	57.9	67.8	52.2	40.9	33.2	77.4	0.71	0.64	0.43	0.48	0.57	0.64	0.455394	1.000000	-
Rv3161c	-	19	132.6	163.8	149.9	147.4	141.3	146.7	-0.143	0.152	0.028	0.004	-0.055	-0.002	175.7	177.8	189.8	168.0	153.4	164.0	0.75	0.92	0.79	0.88	0.92	0.89	0.749789	1.000000	-
Rv3162c	-	6	129.6	137.6	107.3	135.1	141.6	164.9	-0.067	0.016	-0.328	-0.010	0.056	0.269	212.0	206.4	143.1	162.1	170.0	179.9	0.61	0.67	0.75	0.83	0.83	0.92	0.873021	1.000000	-
Rv3163c	-	14	191.1	158.3	151.2	164.5	165.1	152.8	0.216	-0.048	-0.112	0.006	0.011	-0.098	267.5	233.3	249.0	265.8	243.4	194.4	0.71	0.68	0.61	0.62	0.68	0.79	0.964045	1.000000	-
Rv3164c	moxR3	10	118.2	84.1	82.5	101.1	84.2	84.9	0.338	-0.129	-0.157	0.122	-0.129	-0.117	136.4	129.4	109.9	112.3	93.5	94.3	0.87	0.65	0.75	0.90	0.90	0.90	0.468155	1.000000	-
Rv3165c	-	2	44.4	12.9	20.4	32.7	43.3	25.0	0.506	-0.956	-0.455	0.117	0.474	-0.215	44.4	17.2	40.7	32.7	43.3	25.0	1.00	0.75	0.50	1.00	1.00	1.00	0.089366	0.696425	-
Rv3166c	-	10	122.6	108.2	119.5	116.9	99.5	130.9	0.074	-0.100	0.038	0.008	-0.214	0.165	141.5	120.2	119.5	116.9	104.7	130.9	0.87	0.90	1.00	1.00	0.95	1.00	0.241945	1.000000	-
Rv3167c	-	9	138.9	155.2	130.1	149.5	143.5	120.5	-0.008	0.148	-0.098	0.095	0.038	-0.204	170.4	174.6	130.1	161.4	143.5	155.0	0.81	0.89	1.00	0.93	1.00	0.78	0.156059	0.966885	-
Rv3168	-	18	71.4	72.6	95.1	71.1	86.9	74.2	-0.129	-0.106	0.260	-0.135	0.138	-0.077	91.8	81.7	114.1	91.4	107.9	86.2	0.78	0.89	0.83	0.78	0.81	0.86	0.821806	1.000000	-
Rv3169	-	15	50.4	67.5	56.7	61.4	55.8	50.2	-0.163	0.225	-0.008	0.100	-0.028	-0.168	119.3	112.4	130.7	125.6	111.6	71.7	0.42	0.60	0.43	0.49	0.50	0.70	0.673070	1.000000	-
Rv3170	aofH	16	52.9	46.1	55.8	69.8	56.5	57.2	-0.084	-0.265	-0.014	0.286	0.003	0.019	66.8	64.1	81.1	74.5	67.0	70.4	0.79	0.72	0.69	0.94	0.84	0.81	0.286239	1.000000	-
Rv3171c	hpx	12	239.6	225.5	190.1	199.8	183.9	184.0	0.228	0.143	-0.098	-0.028	-0.145	-0.144	287.5	235.3	198.4	266.4	220.7	220.8	0.83	0.96	0.96	0.75	0.83	0.83	0.317992	1.000000	-
Rv3172c	-	15	54.6	72.2	57.3	56.2	50.5	65.5	-0.111	0.262	-0.048	-0.072	-0.215	0.130	74.5	83.3	68.7	66.6	50.5	67.7	0.73	0.87	0.83	0.84	1.00	0.97	0.031559	0.339410	-
Rv3173c	-	7	87.8	70.6	82.8	74.8	80.6	62.8	0.186	-0.109	0.106	-0.032	0.069	-0.266	102.4	89.9	105.4	112.2	102.5	73.3	0.86	0.79	0.79	0.67	0.79	0.86	0.903311	1.000000	-
Rv3174	-	10	162.2	139.2	172.1	143.6	138.2	157.2	0.090	-0.123	0.173	-0.080	-0.134	0.046	180.2	174.0	202.5	187.3	184.2	165.4	0.90	0.80	0.85	0.77	0.75	0.95	0.759059	1.000000	-
Rv3175	-	17	188.9	167.2	187.9	137.7	160.6	153.2	0.182	0.011	0.175	-0.260	-0.045	-0.112	205.0	177.6	206.1	146.3	170.7	162.7	0.92	0.94	0.91	0.94	0.94	0.94	0.981808	1.000000	-
Rv3176c	mesT	13	179.0	206.7	173.0	198.1	199.1	174.8	-0.072	0.130	-0.120	0.070	0.077	-0.106	183.7	223.9	179.9	214.6	215.7	181.7	0.97	0.92	0.96	0.92	0.92	0.96	0.853670	1.000000	-
Rv3177	-	7	47.6	61.2	44.2	44.4	51.2	52.8	-0.072	0.262	-0.168	-0.161	0.025	0.066	58.7	71.5	56.2	58.3	55.1	67.2	0.81	0.86	0.79	0.76	0.93	0.79	0.923503	1.000000	-
Rv3178	-	7	40.9	55.3	63.0	38.7	49.0	63.5	-0.306	0.089	0.261	-0.376	-0.072	0.271	57.2	96.8	98.0	58.1	68.6	88.9	0.71	0.57	0.64	0.67	0.71	0.71	0.366134	1.000000	-
Rv3179	-	13	194.9	222.9	214.8	213.3	219.5	222.4	-0.136	0.054	0.001	-0.009	0.032	0.050	194.9	241.5	214.8	213.3	219.5	222.4	1.00	0.92	1.00	1.00	1.00	1.00	0.339080	1.000000	-
Rv3180c	-	5	180.4	185.7	178.9	166.7	165.5	150.7	0.072	0.113	0.061	-0.039	-0.048	-0.180	193.3	185.7	178.9	178.6	165.5	150.7	0.93	1.00	1.00	0.93	1.00	1.00	0.961098	1.000000	-
Rv3181c	-	6	58.3	39.7	35.9	42.3	28.4	25.8	0.544	0.042	-0.084	0.124	-0.378	-0.494	80.7	59.5	107.8	152.2	85.2	77.5	0.72	0.67	0.33	0.28	0.33	0.33	0.017469	0.212501	-
Rv3182	-	1	51.1	61.2	25.2	78.9	81.2	51.4	-0.170	0.067	-1.062	0.409	0.448	-0.164	51.1	61.2	50.5	78.9	81.2	51.4	1.00	1.00	0.50	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3183	-	3	284.9	252.6	273.0	196.3	220.2	205.8	0.250	0.080	0.189	-0.276	-0.114	-0.210	284.9	252.6	273.0	196.3	220.2	205.8	1.00	1.00	1.00	1.00	1.00	1.00	0.827018	1.000000	-
Rv3184	-	4	208.2	253.1	256.8	252.8	248.7	187.8	-0.168	0.108	0.128	0.106	0.083	-0.313	208.2	253.1	256.8	252.8	248.7	187.8	1.00	1.00	1.00	1.00	1.00	1.00	0.874732	1.000000	-
Rv3185	-	21	288.7	290.7	325.0	302.0	288.9	296.1	-0.047	-0.038	0.120	0.016	-0.047	-0.012	379.0	348.8	379.2	352.4	346.7	327.2	0.76	0.83	0.86	0.86	0.83	0.90	0.975480	1.000000	-
Rv3186	-	4	193.2	238.4	184.9	252.4	222.2	169.5	-0.118	0.178	-0.180	0.259	0.079	-0.302	210.8	238.4	184.9	252.4	222.2	169.5	0.92	1.00	1.00	1.00	1.00	1.00	0.834339	1.000000	-
Rv3187	-	21	271.6	291.1	335.8	308.7	268.3	280.7	-0.106	-0.008	0.195	0.076	-0.123	-0.060	349.2	349.3	427.4	381.4	341.5	310.2	0.78	0.83	0.79	0.81	0.79	0.90	0.913657	1.000000	-
Rv3188	-	6	94.5	150.1	108.7	96.8	103.7	121.7	-0.241	0.400	-0.049	-0.208	-0.113	0.108	94.5	150.1	130.4	96.8	103.7	121.7	1.00	1.00	0.83	1.00	1.00	1.00	0.365251	1.000000	-
Rv3189	-	8	194.3	134.3	154.1	144.3	156.8	162.9	0.292	-0.224	-0.033	-0.125	-0.008	0.044	202.7	153.5	154.1	144.3	156.8	162.9	0.96	0.88	1.00	1.00	1.00	1.00	0.592820	1.000000	-
Rv3190c	-	20	171.4	183.6	162.0	150.6	167.3	179.4	0.020	0.116	-0.060	-0.162	-0.014	0.083	180.5	198.4	175.1	158.5	171.6	179.4	0.95	0.93	0.93	0.95	0.97	1.00	0.767169	1.000000	-
Rv3191c	-	15	120.9	132.7	112.8	140.3	132.3	145.6	-0.109	0.021	-0.205	0.098	0.017	0.149	120.9	132.7	112.8	140.3	132.3	145.6	1.00	1.00	1.00	1.00	1.00	1.00	0.696624	1.000000	-
Rv3192	-	4	171.9	192.8	159.7	158.4	168.6	196.4	-0.022	0.139	-0.125	-0.137	-0.049	0.165	171.9	192.8	159.7	158.4	168.6	196.4	1.00	1.00	1.00	1.00	1.00	1.00	0.967603	1.000000	-
Rv3193c	-	79	19.1	32.4	23.8	40.6	49.1	28.4	-0.625	0.006	-0.372	0.291	0.539	-0.155	34.4	40.6	41.7	48.1	57.1	34.0	0.56	0.80	0.57	0.84	0.86	0.84	0.000000	0.000000	-
Rv3194c	-	12	174.0	176.6	193.8	205.1	186.0	186.0	-0.100	-0.079	0.051	0.130	-0.007	-0.007	179.0	176.6	193.8	205.1	186.0	186.0	0.97	1.00	1.00	1.00	1.00	1.00	0.953043	1.000000	-
Rv3195	-	15	161.2	148.8	147.6	156.1	158.8	165.0	0.044	-0.068	-0.080	-0.001	0.022	0.077	172.8	159.4	158.1	159.6	176.4	165.0	0.93	0.93	0.93	0.98	0.90	1.00	0.788518	1.000000	-
Rv3196	-	8	254.7	180.0	212.0	253.7	246.7	249.9	0.127	-0.362	-0.132	0.121	0.082	0.100	265.8	180.0	212.0	253.7	246.7	249.9	0.96	1.00	1.00	1.00	1.00	1.00	0.887451	1.000000	-
Rv3196A	-	1	376.1	326.8	371.6	333.1	324.1	302.9	0.147	-0.052	0.130	-0.025	-0.064	-0.160	376.1	326.8	371.6	333.1	324.1	302.9	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3197	-	18	167.9	136.2	143.7	145.9	145.3	147.1	0.180	-0.113	-0.038	-0.017	-0.023	-0.006	181.4	140.1	152.2	151.5	149.5	147.1	0.93	0.97	0.94	0.96	0.97	1.00	0.861483	1.000000	-
Rv3197A	whiB7	3	183.8	211.5	154.6	229.8	188.1	190.3	-0.069	0.129	-0.311	0.246	-0.037	-0.020	275.7	317.2	185.6	229.8	188.1	228.4	0.67	0.67	0.83	1.00	1.00	0.83	0.558744	1.000000	-
Rv3198c	uvrD2	30	13.1	19.5	12.1	16.4	21.6	18.2	-0.272	0.167	-0.351	-0.028	0.288	0.089	78.3	64.9	120.8	98.2	76.2	90.9	0.17	0.30	0.10	0.17	0.28	0.20	0.434214	1.000000	-
Rv3198A	-	6	286.5	330.5	259.8	365.4	325.9	294.7	-0.114	0.089	-0.253	0.231	0.069	-0.074	286.5	330.5	283.4	365.4	325.9	294.7	1.00	1.00	0.92	1.00	1.00	1.00	0.892786	1.000000	-
Rv3199c	nudC	7	253.5	290.1	281.9	280.7	244.9	236.1	-0.060	0.131	0.090	0.084	-0.109	-0.161	266.2	290.1	281.9	280.7	244.9	236.1	0.95	1.00	1.00	1.00	1.00	1.00	0.983614	1.000000	-
Rv3200c	-	13	73.5	89.8	74.5	85.9	93.9	87.9	-0.185	0.088	-0.166	0.026	0.147	0.058	92.5	106.2	102.0	101.5	97.6	99.3	0.79	0.85	0.73	0.85	0.96	0.88	0.802367	1.000000	-
Rv3201c	-	38	143.3	124.1	126.8	151.4	134.8	136.5	0.071	-0.128	-0.099	0.148	-0.014	0.003	171.9	142.9	150.6	179.7	152.9	146.1	0.83	0.87	0.84	0.84	0.88	0.93	0.750179	1.000000	-
Rv3202c	-	27	281.1	278.1	266.4	287.1	289.2	269.2	0.013	-0.002	-0.063	0.043	0.053	-0.048	295.7	300.3	293.6	305.9	300.3	285.1	0.95	0.93	0.91	0.94	0.96	0.94	0.995022	1.000000	-
Rv3203	lipV	12	80.4	96.5	67.3	82.7	80.6	93.8	-0.053	0.197	-0.292	-0.014	-0.049	0.158	90.4	96.5	76.9	85.0	87.9	93.8	0.89	1.00	0.88	0.97	0.92	1.00	0.423479	1.000000	-
Rv3204	-	4	136.9	123.6	153.1	109.1	120.0	154.8	0.041	-0.100	0.197	-0.274	-0.142	0.213	149.3	123.6	153.1	109.1	120.0	154.8	0.92	1.00	1.00	1.00	1.00	1.00	0.792276	1.000000	-
Rv3205c	-	10	44.5	100.5	50.6	84.2	121.8	61.9	-0.734	0.359	-0.566	0.117	0.625	-0.297	60.6	111.7	72.3	87.1	128.2	65.2	0.73	0.90	0.70	0.97	0.95	0.95	0.010875	0.147093	-
Rv3206c	moeB1	22	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3207c	-	14	203.7	199.2	194.7	195.9	213.8	209.8	0.006	-0.026	-0.058	-0.049	0.074	0.048	244.5	206.6	247.8	216.6	213.8	217.6	0.83	0.96	0.79	0.90	1.00	0.96	0.380328	1.000000	-
Rv3208	-	9	0.0	0.0	0.0	1.0	0.0	0.0	-0.046	-0.046	-0.046	0.209	-0.046	-0.046	0.0	0.0	0.0	13.0	0.0	0.0	0.00	0.00	0.00	0.07	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3208A	TB9.4	4	120.0	129.6	61.1	165.7	135.5	102.3	0.011	0.118	-0.908	0.461	0.180	-0.209	120.0	129.6	69.8	165.7	135.5	102.3	1.00	1.00	0.88	1.00	1.00	1.00	0.016049	0.200735	-
Rv3209	-	9	282.6	284.5	298.6	280.9	277.3	252.8	0.016	0.025	0.094	0.007	-0.011	-0.142	305.2	284.5	298.6	280.9	277.3	252.8	0.93	1.00	1.00	1.00	1.00	1.00	0.836332	1.000000	-
Rv3210c	-	10	11.6	27.5	10.6	18.8	17.6	26.8	-0.523	0.450	-0.609	-0.003	-0.074	0.416	23.1	29.0	21.2	33.1	25.2	33.4	0.50	0.95	0.50	0.57	0.70	0.80	0.010403	0.143602	-
Rv3211	rhlE	21	112.2	114.1	101.3	81.6	78.7	97.9	0.191	0.215	0.051	-0.245	-0.295	0.003	130.9	129.6	125.1	102.8	100.1	111.1	0.86	0.88	0.81	0.79	0.79	0.88	0.809287	1.000000	-
Rv3212	-	18	7.0	22.9	6.2	9.1	9.7	14.8	-0.474	0.746	-0.563	-0.232	-0.178	0.252	17.9	25.7	20.4	19.0	18.4	21.3	0.39	0.89	0.31	0.48	0.53	0.69	0.000005	0.000169	-
Rv3213c	-	8	186.6	260.8	236.7	238.8	227.3	201.7	-0.265	0.206	0.070	0.082	0.012	-0.156	186.6	260.8	236.7	238.8	227.3	201.7	1.00	1.00	1.00	1.00	1.00	1.00	0.794217	1.000000	-
Rv3214	gpm2	10	22.7	53.0	49.4	63.8	68.8	41.5	-0.987	0.081	-0.013	0.327	0.427	-0.238	37.8	66.3	65.8	70.9	68.8	51.9	0.60	0.80	0.75	0.90	1.00	0.80	0.006559	0.098749	-
Rv3215	entC	15	18.8	22.3	45.7	128.9	98.3	14.8	-1.328	-1.129	-0.237	1.163	0.788	-1.598	30.3	31.9	59.7	131.8	98.3	21.1	0.62	0.70	0.77	0.98	1.00	0.70	0.000000	0.000000	-
Rv3216	-	6	312.5	199.7	238.2	224.0	223.5	234.3	0.382	-0.251	-0.003	-0.090	-0.093	-0.026	312.5	199.7	238.2	224.0	223.5	234.3	1.00	1.00	1.00	1.00	1.00	1.00	0.589490	1.000000	-
Rv3217c	-	3	218.5	238.0	269.9	257.1	225.5	217.2	-0.119	0.002	0.180	0.111	-0.074	-0.128	218.5	238.0	269.9	257.1	225.5	217.2	1.00	1.00	1.00	1.00	1.00	1.00	0.709650	1.000000	-
Rv3218	-	17	98.3	126.4	113.2	121.2	124.5	101.3	-0.206	0.141	-0.011	0.083	0.120	-0.165	131.9	153.5	137.5	131.5	132.3	123.0	0.75	0.82	0.82	0.92	0.94	0.82	0.531146	1.000000	-
Rv3219	whiB1	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3220c	-	18	256.9	151.2	238.8	125.4	137.4	197.7	0.466	-0.279	0.363	-0.540	-0.413	0.096	256.9	160.1	238.8	127.7	137.4	197.7	1.00	0.94	1.00	0.98	1.00	1.00	0.000013	0.000411	-
Rv3221c	TB7.3	2	0.0	0.0	3.1	0.0	0.0	0.0	-0.144	-0.144	0.561	-0.144	-0.144	-0.144	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.25	0.00	0.00	0.00	0.481431	1.000000	-
Rv3221A	-	2	0.0	7.6	3.1	2.2	2.3	7.4	-0.809	0.522	-0.104	-0.289	-0.272	0.502	0.0	15.1	12.6	13.0	9.0	14.8	0.00	0.50	0.25	0.17	0.25	0.50	0.732594	1.000000	-
Rv3222c	-	7	0.0	0.0	0.0	0.7	0.0	0.0	-0.033	-0.033	-0.033	0.153	-0.033	-0.033	0.0	0.0	0.0	14.4	0.0	0.0	0.00	0.00	0.00	0.05	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3223c	sigH	14	113.8	163.2	108.6	143.0	172.1	169.5	-0.337	0.165	-0.402	-0.019	0.240	0.218	119.4	163.2	112.6	146.5	172.1	169.5	0.95	1.00	0.96	0.98	1.00	1.00	0.068155	0.587338	-
Rv3224	-	15	201.6	169.1	195.8	193.5	182.0	171.5	0.117	-0.131	0.075	0.059	-0.028	-0.111	226.8	181.1	209.7	207.3	194.9	183.7	0.89	0.93	0.93	0.93	0.93	0.93	0.999815	1.000000	-
Rv3224A	-	3	17.3	20.5	11.5	13.9	21.1	17.1	0.028	0.222	-0.411	-0.212	0.251	0.013	31.2	24.6	22.9	31.3	21.1	20.5	0.56	0.83	0.50	0.44	1.00	0.83	0.313457	1.000000	-
Rv3224B	-	3	156.8	130.7	143.5	186.0	163.2	166.1	-0.008	-0.262	-0.132	0.231	0.048	0.073	156.8	130.7	143.5	186.0	163.2	166.1	1.00	1.00	1.00	1.00	1.00	1.00	0.848996	1.000000	-
Rv3225c	-	23	254.0	246.0	243.9	242.7	236.8	257.0	0.041	-0.004	-0.017	-0.023	-0.058	0.058	265.6	246.0	254.9	261.6	247.5	257.0	0.96	1.00	0.96	0.93	0.96	1.00	0.570064	1.000000	-
Rv3226c	-	6	277.2	223.7	260.7	216.3	205.3	243.1	0.217	-0.086	0.130	-0.133	-0.207	0.032	277.2	223.7	260.7	216.3	205.3	243.1	1.00	1.00	1.00	1.00	1.00	1.00	0.896230	1.000000	-
Rv3227	aroA	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3228	-	7	33.9	44.3	26.0	61.8	66.3	31.5	-0.332	0.011	-0.660	0.449	0.542	-0.425	44.5	51.7	40.4	72.2	66.3	49.0	0.76	0.86	0.64	0.86	1.00	0.64	0.085355	0.682500	-
Rv3229c	-	21	62.8	87.4	44.5	42.7	45.2	59.7	0.128	0.575	-0.326	-0.380	-0.306	0.060	68.2	89.5	62.3	47.2	49.9	59.7	0.92	0.98	0.71	0.90	0.90	1.00	0.000003	0.000102	-
Rv3230c	-	14	53.8	91.0	51.7	36.5	51.1	49.9	-0.045	0.662	-0.097	-0.548	-0.113	-0.144	66.4	91.0	68.9	47.9	59.6	53.7	0.81	1.00	0.75	0.76	0.86	0.93	0.006307	0.095690	-
Rv3231c	-	5	396.4	323.9	366.1	254.1	225.6	283.0	0.358	0.071	0.245	-0.273	-0.442	-0.121	396.4	323.9	366.1	254.1	225.6	283.0	1.00	1.00	1.00	1.00	1.00	1.00	0.265934	1.000000	-
Rv3232c	pvdS	20	290.2	314.1	285.7	309.3	299.0	319.1	-0.061	0.052	-0.083	0.030	-0.018	0.074	290.2	314.1	285.7	309.3	299.0	319.1	1.00	1.00	1.00	1.00	1.00	1.00	0.982590	1.000000	-
Rv3233c	-	12	217.0	177.8	193.8	175.7	177.7	211.8	0.170	-0.110	0.011	-0.127	-0.111	0.136	244.2	177.8	221.5	180.7	193.9	211.8	0.89	1.00	0.88	0.97	0.92	1.00	0.380682	1.000000	-
Rv3234c	-	16	187.8	210.7	200.5	214.9	193.3	201.8	-0.099	0.063	-0.007	0.091	-0.059	0.002	225.4	240.8	213.9	224.2	206.1	201.8	0.83	0.88	0.94	0.96	0.94	1.00	0.394857	1.000000	-
Rv3235	-	6	107.5	101.5	114.0	112.9	117.0	102.7	-0.023	-0.101	0.059	0.045	0.094	-0.085	129.0	121.8	136.8	135.5	127.6	123.3	0.83	0.83	0.83	0.83	0.92	0.83	0.999976	1.000000	-
Rv3236c	-	11	90.7	107.8	90.1	89.0	93.5	97.4	-0.060	0.177	-0.068	-0.086	-0.018	0.038	110.8	112.9	116.7	101.3	98.0	112.8	0.82	0.95	0.77	0.88	0.95	0.86	0.878470	1.000000	-
Rv3237c	-	8	182.8	180.0	173.1	170.3	151.3	185.8	0.070	0.049	-0.006	-0.029	-0.195	0.093	208.9	205.8	197.8	194.6	161.4	198.2	0.88	0.88	0.88	0.88	0.94	0.94	0.999380	1.000000	-
Rv3238c	-	18	151.1	171.4	146.6	147.0	151.2	169.6	-0.046	0.130	-0.088	-0.084	-0.045	0.115	151.1	171.4	146.6	147.0	151.2	169.6	1.00	1.00	1.00	1.00	1.00	1.00	0.932343	1.000000	-
Rv3239c	-	52	255.6	238.0	238.6	233.9	225.8	232.6	0.104	0.003	0.007	-0.021	-0.071	-0.029	280.8	257.8	275.7	260.6	244.6	244.4	0.91	0.92	0.87	0.90	0.92	0.95	0.952343	1.000000	-
Rv3240c	secA1	44	12.7	10.7	10.3	14.3	15.6	11.5	0.014	-0.160	-0.195	0.143	0.233	-0.085	279.1	187.8	226.5	315.4	195.9	168.8	0.05	0.06	0.05	0.05	0.08	0.07	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3241c	-	10	211.5	235.5	193.4	241.9	245.8	239.4	-0.106	0.046	-0.232	0.084	0.107	0.070	211.5	235.5	193.4	241.9	245.8	239.4	1.00	1.00	1.00	1.00	1.00	1.00	0.771847	1.000000	-
Rv3242c	-	4	227.5	258.2	192.3	232.4	248.9	195.6	0.011	0.189	-0.227	0.040	0.138	-0.202	227.5	258.2	219.7	232.4	248.9	195.6	1.00	1.00	0.88	1.00	1.00	1.00	0.928082	1.000000	-
Rv3243c	-	4	175.1	118.3	137.8	142.1	142.0	199.4	0.194	-0.353	-0.141	-0.098	-0.099	0.376	210.1	135.2	137.8	142.1	162.3	265.8	0.83	0.88	1.00	1.00	0.88	0.75	0.284463	1.000000	-
Rv3244c	lpqB	18	0.4	0.3	0.0	0.0	0.0	0.6	0.057	0.019	-0.062	-0.062	-0.062	0.101	11.6	10.4	0.0	0.0	0.0	10.8	0.04	0.03	0.00	0.00	0.00	0.06	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3245c	mtrB	19	0.2	1.1	0.3	0.0	1.6	0.0	-0.089	0.131	-0.054	-0.147	0.257	-0.147	11.6	13.4	12.6	0.0	15.4	0.0	0.02	0.08	0.03	0.00	0.11	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3246c	mtrA	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3247c	tmk	9	13.2	5.6	7.3	15.1	11.4	5.6	0.310	-0.468	-0.262	0.448	0.160	-0.469	119.1	50.7	65.4	135.7	68.6	50.7	0.11	0.11	0.11	0.11	0.17	0.11	0.459774	1.000000	-
Rv3248c	sahH	17	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3249c	-	12	85.5	137.4	89.7	133.1	144.2	96.7	-0.400	0.253	-0.335	0.210	0.321	-0.232	109.9	143.3	107.6	136.9	157.3	96.7	0.78	0.96	0.83	0.97	0.92	1.00	0.069410	0.595580	-
Rv3250c	rubB	3	191.7	219.2	214.7	207.8	177.5	189.2	-0.060	0.129	0.100	0.054	-0.168	-0.078	191.7	219.2	214.7	207.8	177.5	189.2	1.00	1.00	1.00	1.00	1.00	1.00	0.991667	1.000000	-
Rv3251c	rubA	3	146.1	195.0	143.7	124.9	156.1	197.4	-0.131	0.273	-0.154	-0.350	-0.039	0.290	146.1	195.0	143.7	124.9	156.1	197.4	1.00	1.00	1.00	1.00	1.00	1.00	0.860892	1.000000	-
Rv3252c	alkB	28	295.7	292.6	307.0	290.3	292.1	311.6	-0.012	-0.027	0.041	-0.038	-0.030	0.063	299.2	292.6	312.6	290.3	292.1	311.6	0.99	1.00	0.98	1.00	1.00	1.00	0.896931	1.000000	-
Rv3253c	-	22	132.8	116.8	125.9	102.0	108.4	133.7	0.142	-0.037	0.067	-0.224	-0.140	0.151	156.5	131.8	158.3	124.7	132.5	143.5	0.85	0.89	0.80	0.82	0.82	0.93	0.827691	1.000000	-
Rv3254	-	17	183.2	170.7	160.8	164.2	178.1	175.5	0.088	-0.011	-0.095	-0.065	0.048	0.027	207.7	223.3	210.3	194.8	201.8	205.8	0.88	0.76	0.76	0.84	0.88	0.85	0.913290	1.000000	-
Rv3255c	manA	17	0.0	0.3	0.4	0.0	0.0	0.3	-0.047	0.039	0.056	-0.047	-0.047	0.042	0.0	10.4	12.6	0.0	0.0	10.8	0.00	0.03	0.03	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3256c	-	7	63.8	103.1	72.8	108.8	91.9	83.1	-0.423	0.229	-0.246	0.303	0.071	-0.067	83.8	103.1	92.7	108.8	99.0	89.5	0.76	1.00	0.79	1.00	0.93	0.93	0.205096	1.000000	-
Rv3257c	manB	20	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3258c	-	4	8.5	6.2	6.3	4.5	12.2	9.0	0.080	-0.186	-0.175	-0.431	0.427	0.127	34.0	49.8	50.5	26.9	48.7	35.8	0.25	0.12	0.12	0.17	0.25	0.25	0.628944	1.000000	-
Rv3259	-	2	285.3	317.3	418.6	293.3	292.0	293.3	-0.148	0.003	0.397	-0.109	-0.115	-0.108	285.3	317.3	418.6	293.3	292.0	293.3	1.00	1.00	1.00	1.00	1.00	1.00	0.187843	1.000000	-
Rv3260c	whiB2	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3261	fbiA	13	195.8	169.2	217.1	110.3	110.8	169.4	0.265	0.060	0.411	-0.535	-0.530	0.061	200.9	231.6	268.8	130.3	120.0	200.1	0.97	0.73	0.81	0.85	0.92	0.85	0.019701	0.232570	-
Rv3262	fbiB	12	123.1	106.3	140.4	113.9	133.3	96.8	0.048	-0.156	0.230	-0.060	0.158	-0.285	123.1	106.3	140.4	113.9	133.3	96.8	1.00	1.00	1.00	1.00	1.00	1.00	0.420974	1.000000	-
Rv3263	-	25	177.9	169.4	167.0	153.3	148.2	173.8	0.106	0.037	0.017	-0.102	-0.150	0.073	188.0	184.1	177.7	166.7	157.6	188.9	0.95	0.92	0.94	0.92	0.94	0.92	0.982558	1.000000	-
Rv3264c	manB	14	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3265c	wbbL1	13	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3266c	rmlD	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3267	-	19	3.6	17.1	4.4	7.0	21.4	8.5	-0.839	0.528	-0.701	-0.358	0.784	-0.182	18.5	25.0	21.1	20.9	33.9	20.2	0.19	0.68	0.21	0.33	0.63	0.42	0.000000	0.000014	-
Rv3268	-	13	301.3	306.8	349.0	311.9	257.8	276.4	0.004	0.029	0.213	0.053	-0.218	-0.119	345.6	332.3	378.1	337.9	279.2	299.4	0.87	0.92	0.92	0.92	0.92	0.92	0.998483	1.000000	-
Rv3269	-	4	113.1	149.8	90.9	98.7	68.4	92.1	0.140	0.531	-0.160	-0.047	-0.546	-0.142	123.3	199.7	103.9	131.6	78.2	92.1	0.92	0.75	0.88	0.75	0.88	1.00	0.610365	1.000000	-
Rv3270	ctpC	15	171.7	165.8	190.2	165.4	150.1	204.1	-0.023	-0.072	0.121	-0.076	-0.211	0.220	241.5	216.3	237.8	232.5	173.2	218.6	0.71	0.77	0.80	0.71	0.87	0.93	0.574799	1.000000	-
Rv3271c	-	6	77.5	107.1	61.3	78.6	74.4	101.9	-0.101	0.342	-0.417	-0.082	-0.155	0.273	99.6	116.8	91.9	101.0	81.2	122.3	0.78	0.92	0.67	0.78	0.92	0.83	0.904970	1.000000	-
Rv3272	-	18	84.8	77.5	80.5	82.0	80.0	71.6	0.089	-0.033	0.019	0.044	0.011	-0.140	106.5	103.3	120.7	116.5	99.3	85.9	0.80	0.75	0.67	0.70	0.81	0.83	0.854256	1.000000	-
Rv3273	-	27	77.7	85.4	68.8	71.4	84.1	59.8	0.057	0.184	-0.108	-0.058	0.164	-0.295	96.8	94.1	95.2	83.8	100.9	75.1	0.80	0.91	0.72	0.85	0.83	0.80	0.519597	1.000000	-
Rv3274c	fadE25	16	95.7	51.7	122.2	43.8	43.8	54.9	0.451	-0.378	0.788	-0.594	-0.596	-0.299	127.6	63.6	156.4	56.9	60.9	70.3	0.75	0.81	0.78	0.77	0.72	0.78	0.000000	0.000006	-
Rv3275c	purE	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3276c	purK	8	0.0	0.0	0.0	0.0	1.1	0.0	-0.053	-0.053	-0.053	-0.053	0.240	-0.053	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.12	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3277	-	13	23.9	26.6	28.5	35.2	33.7	29.3	-0.258	-0.127	-0.042	0.219	0.165	-0.012	58.2	57.7	61.8	80.7	73.1	69.2	0.41	0.46	0.46	0.44	0.46	0.42	0.960723	1.000000	-
Rv3278c	-	7	79.3	60.6	62.6	66.7	66.3	94.4	0.138	-0.224	-0.181	-0.097	-0.105	0.375	104.1	70.7	87.6	87.5	84.4	120.2	0.76	0.86	0.71	0.76	0.79	0.79	0.987680	1.000000	-
Rv3279c	birA	5	0.0	0.0	0.0	0.0	1.5	0.0	-0.068	-0.068	-0.068	-0.068	0.299	-0.068	0.0	0.0	0.0	0.0	14.5	0.0	0.00	0.00	0.00	0.00	0.10	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3280	accD5	30	0.0	0.0	0.4	0.0	0.0	0.0	-0.020	-0.020	0.096	-0.020	-0.020	-0.020	0.0	0.0	25.2	0.0	0.0	0.0	0.00	0.00	0.02	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3281	-	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3282	maf	11	45.2	55.2	59.9	66.4	51.9	52.2	-0.260	0.001	0.110	0.247	-0.079	-0.071	64.9	67.4	94.1	70.6	67.2	57.5	0.70	0.82	0.64	0.94	0.77	0.91	0.211220	1.000000	-
Rv3283	sseA	16	160.3	112.4	186.3	40.8	49.6	83.4	0.581	0.088	0.792	-1.269	-1.017	-0.321	174.8	116.0	198.8	56.0	51.2	92.0	0.92	0.97	0.94	0.73	0.97	0.91	0.000000	0.000000	-
Rv3284	-	5	80.9	75.1	92.5	98.3	98.0	55.2	-0.041	-0.140	0.142	0.226	0.222	-0.553	80.9	75.1	92.5	98.3	98.0	61.3	1.00	1.00	1.00	1.00	1.00	0.90	0.529800	1.000000	-
Rv3285	accA3	23	0.0	0.0	0.0	0.2	0.0	0.0	-0.010	-0.010	-0.010	0.049	-0.010	-0.010	0.0	0.0	0.0	14.4	0.0	0.0	0.00	0.00	0.00	0.01	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3286c	sigF	9	201.0	196.8	177.9	194.8	203.7	186.5	0.054	0.024	-0.117	0.010	0.073	-0.052	201.0	208.4	177.9	194.8	215.7	186.5	1.00	0.94	1.00	1.00	0.94	1.00	0.727854	1.000000	-
Rv3287c	rsbW	2	276.2	202.9	162.6	163.3	212.0	280.4	0.346	-0.090	-0.401	-0.394	-0.028	0.367	276.2	202.9	162.6	163.3	212.0	280.4	1.00	1.00	1.00	1.00	1.00	1.00	0.638770	1.000000	-
Rv3288c	usfY	10	22.5	23.5	22.2	30.1	40.6	42.8	-0.358	-0.308	-0.376	-0.009	0.371	0.437	37.6	39.2	44.4	50.1	62.5	65.8	0.60	0.60	0.50	0.60	0.65	0.65	0.276619	1.000000	-
Rv3289c	-	6	198.3	243.2	195.7	250.7	248.9	231.8	-0.198	0.091	-0.216	0.134	0.123	0.023	198.3	243.2	213.4	265.5	248.9	231.8	1.00	1.00	0.92	0.94	1.00	1.00	0.876907	1.000000	-
Rv3290c	lat	22	286.3	281.1	301.6	308.4	319.4	280.0	-0.048	-0.074	0.026	0.058	0.107	-0.079	290.7	281.1	301.6	308.4	319.4	280.0	0.98	1.00	1.00	1.00	1.00	1.00	0.951552	1.000000	-
Rv3291c	-	6	189.2	198.5	151.8	235.8	176.7	211.4	-0.035	0.033	-0.343	0.276	-0.130	0.122	189.2	198.5	151.8	235.8	176.7	211.4	1.00	1.00	1.00	1.00	1.00	1.00	0.457009	1.000000	-
Rv3292	-	18	222.3	231.0	195.8	237.9	229.2	206.4	0.012	0.066	-0.167	0.108	0.055	-0.093	222.3	231.0	201.4	237.9	229.2	206.4	1.00	1.00	0.97	1.00	1.00	1.00	0.896255	1.000000	-
Rv3293	pcd	13	157.6	190.3	150.1	193.2	159.1	196.7	-0.143	0.122	-0.211	0.143	-0.129	0.169	204.8	215.1	185.8	251.1	188.0	196.7	0.77	0.88	0.81	0.77	0.85	1.00	0.249736	1.000000	-
Rv3294c	-	20	73.1	103.6	85.0	86.2	98.4	110.9	-0.326	0.150	-0.121	-0.103	0.080	0.244	91.3	115.1	109.7	99.4	106.4	116.8	0.80	0.90	0.78	0.87	0.93	0.95	0.434123	1.000000	-
Rv3295	-	11	430.1	320.8	358.6	327.9	307.3	331.2	0.310	-0.107	0.051	-0.076	-0.169	-0.062	473.1	320.8	375.7	360.7	307.3	364.3	0.91	1.00	0.95	0.91	1.00	0.91	0.549536	1.000000	-
Rv3296	lhr	53	252.1	241.7	252.2	230.1	228.0	217.3	0.088	0.028	0.088	-0.041	-0.054	-0.122	274.6	275.5	262.1	248.9	241.7	232.7	0.92	0.88	0.96	0.92	0.94	0.93	0.535199	1.000000	-
Rv3297	nei	9	114.5	141.6	159.9	161.1	153.9	158.0	-0.358	-0.063	0.107	0.117	0.053	0.090	123.7	159.3	179.9	167.3	173.1	177.8	0.93	0.89	0.89	0.96	0.89	0.89	0.815993	1.000000	-
Rv3298c	lpqC	10	155.1	157.0	160.8	150.8	151.3	172.4	-0.025	-0.008	0.025	-0.064	-0.060	0.123	178.9	184.8	214.4	188.5	178.0	191.6	0.87	0.85	0.75	0.80	0.85	0.90	0.994442	1.000000	-
Rv3299c	atsB	42	112.8	97.4	110.4	110.2	108.3	111.6	0.054	-0.147	0.024	0.022	-0.002	0.040	130.4	116.9	136.3	127.4	116.6	126.7	0.87	0.83	0.81	0.87	0.93	0.88	0.855779	1.000000	-
Rv3300c	-	9	105.8	123.1	154.6	136.1	90.1	93.7	-0.141	0.067	0.385	0.207	-0.362	-0.308	114.3	184.6	214.1	153.2	101.4	120.5	0.93	0.67	0.72	0.89	0.89	0.78	0.038235	0.395231	-
Rv3301c	phoY1	6	153.5	143.0	109.1	96.5	102.4	148.8	0.280	0.181	-0.194	-0.363	-0.281	0.237	162.5	171.6	109.1	115.8	111.7	178.6	0.94	0.83	1.00	0.83	0.92	0.83	0.235014	1.000000	-
Rv3302c	glpD2	28	0.1	0.0	0.0	0.0	0.0	0.0	0.033	-0.007	-0.007	-0.007	-0.007	-0.007	11.6	0.0	0.0	0.0	0.0	0.0	0.01	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3303c	lpdA	18	41.4	40.7	39.6	34.8	36.2	32.7	0.124	0.104	0.067	-0.096	-0.047	-0.176	57.3	52.4	71.2	53.7	44.9	40.5	0.72	0.78	0.56	0.65	0.81	0.81	0.315170	1.000000	-
Rv3304	-	8	106.8	133.8	112.8	113.6	118.7	100.0	-0.093	0.218	-0.018	-0.009	0.053	-0.184	116.5	142.7	120.3	118.5	118.7	123.1	0.92	0.94	0.94	0.96	1.00	0.81	0.654271	1.000000	-
Rv3305c	amiA1	19	38.0	39.4	42.8	57.2	61.8	52.6	-0.320	-0.273	-0.165	0.215	0.316	0.103	63.6	62.3	67.8	75.9	80.9	71.4	0.60	0.63	0.63	0.75	0.76	0.74	0.716305	1.000000	-
Rv3306c	amiB1	15	108.7	173.1	94.7	142.1	132.6	115.6	-0.225	0.424	-0.414	0.147	0.052	-0.139	168.6	185.5	123.5	177.6	159.1	133.4	0.64	0.93	0.77	0.80	0.83	0.87	0.263982	1.000000	-
Rv3307	deoD	10	136.6	137.9	139.8	162.6	143.2	127.5	-0.047	-0.034	-0.015	0.197	0.019	-0.142	146.3	153.2	139.8	180.7	159.1	134.3	0.93	0.90	1.00	0.90	0.90	0.95	0.569230	1.000000	-
Rv3308	pmmB	18	190.2	194.9	162.8	189.6	160.2	165.8	0.099	0.133	-0.119	0.095	-0.142	-0.094	209.6	233.8	202.1	227.6	186.1	213.2	0.91	0.83	0.81	0.83	0.86	0.78	0.796996	1.000000	-
Rv3309c	upp	8	253.4	235.8	263.6	233.6	260.6	201.7	0.068	-0.034	0.124	-0.047	0.108	-0.253	253.4	269.5	263.6	267.0	297.8	201.7	1.00	0.88	1.00	0.88	0.88	1.00	0.175366	1.000000	-
Rv3310	sapM	13	109.9	124.7	109.8	140.2	128.6	132.1	-0.170	0.006	-0.171	0.168	0.048	0.086	138.2	141.0	158.5	165.7	139.3	149.3	0.79	0.88	0.69	0.85	0.92	0.88	0.841391	1.000000	-
Rv3311	satS	14	54.2	91.9	46.0	112.1	110.3	81.2	-0.566	0.145	-0.781	0.419	0.396	-0.023	87.5	122.5	71.6	147.2	140.4	113.7	0.62	0.75	0.64	0.76	0.79	0.71	0.490347	1.000000	-
Rv3312c	-	17	342.5	329.0	343.4	318.6	324.2	350.2	0.033	-0.024	0.037	-0.070	-0.045	0.065	379.7	349.6	343.4	324.9	344.5	350.2	0.90	0.94	1.00	0.98	0.94	1.00	0.407418	1.000000	-
Rv3312A	-	4	151.3	193.9	216.2	155.0	207.5	178.8	-0.273	0.075	0.229	-0.239	0.171	-0.038	151.3	193.9	216.2	155.0	207.5	178.8	1.00	1.00	1.00	1.00	1.00	1.00	0.727966	1.000000	-
Rv3313c	add	10	98.7	86.7	86.9	103.1	73.5	94.4	0.118	-0.060	-0.056	0.178	-0.283	0.056	109.7	102.0	96.6	106.7	77.4	94.4	0.90	0.85	0.90	0.97	0.95	1.00	0.650368	1.000000	-
Rv3314c	deoA	10	105.5	103.5	110.3	85.8	101.8	108.7	0.038	0.012	0.100	-0.245	-0.011	0.079	105.5	103.5	116.1	91.9	107.1	108.7	1.00	1.00	0.95	0.93	0.95	1.00	0.670708	1.000000	-
Rv3315c	cdd	5	61.2	47.0	66.3	56.0	46.2	40.4	0.194	-0.154	0.302	0.076	-0.175	-0.350	70.6	52.2	82.9	56.0	66.0	40.4	0.87	0.90	0.80	1.00	0.70	1.00	0.215672	1.000000	-
Rv3316	sdhC	5	57.4	85.9	68.1	49.8	87.0	85.4	-0.308	0.235	-0.079	-0.496	0.252	0.226	57.4	85.9	68.1	49.8	87.0	85.4	1.00	1.00	1.00	1.00	1.00	1.00	0.068084	0.587338	-
Rv3317	sdhD	4	82.2	76.3	69.4	78.9	96.6	109.8	-0.055	-0.156	-0.283	-0.109	0.166	0.343	82.2	76.3	69.4	78.9	96.6	109.8	1.00	1.00	1.00	1.00	1.00	1.00	0.536494	1.000000	-
Rv3318	sdhA	27	132.7	108.1	117.2	116.8	109.7	110.2	0.189	-0.095	0.017	0.012	-0.074	-0.068	147.2	112.2	129.2	121.3	118.5	121.5	0.90	0.96	0.91	0.96	0.93	0.91	0.833644	1.000000	-
Rv3319	sdhB	8	168.5	160.9	165.9	177.9	173.5	153.8	0.015	-0.050	-0.007	0.091	0.056	-0.113	224.7	214.5	221.2	251.1	252.3	189.2	0.75	0.75	0.75	0.71	0.69	0.81	0.997444	1.000000	-
Rv3320c	-	5	83.2	92.0	80.6	83.7	83.2	73.0	0.009	0.147	-0.033	0.018	0.009	-0.169	83.2	115.1	80.6	83.7	83.2	91.2	1.00	0.80	1.00	1.00	1.00	0.80	0.184646	1.000000	-
Rv3321c	-	3	488.0	415.1	484.2	417.8	374.0	451.0	0.153	-0.078	0.142	-0.069	-0.226	0.041	731.9	415.1	581.0	626.7	561.1	676.5	0.67	1.00	0.83	0.67	0.67	0.67	0.874545	1.000000	-
Rv3322c	-	7	282.1	263.1	310.0	263.6	259.4	279.5	0.030	-0.069	0.163	-0.066	-0.089	0.016	282.1	306.9	310.0	307.5	302.6	326.1	1.00	0.86	1.00	0.86	0.86	0.86	0.427334	1.000000	-
Rv3323c	moaX	13	138.9	153.1	118.4	129.5	154.0	186.9	-0.077	0.059	-0.299	-0.174	0.067	0.338	154.8	165.9	139.9	148.6	166.8	194.4	0.90	0.92	0.85	0.87	0.92	0.96	0.845313	1.000000	-
Rv3324c	moaC	10	236.8	230.8	185.0	230.0	235.4	217.7	0.087	0.051	-0.261	0.046	0.079	-0.031	236.8	230.8	217.7	230.0	235.4	217.7	1.00	1.00	0.85	1.00	1.00	1.00	0.512748	1.000000	-
Rv3325	-	4	191.9	224.4	204.6	246.7	230.1	168.8	-0.134	0.086	-0.044	0.220	0.122	-0.314	191.9	224.4	204.6	246.7	230.1	168.8	1.00	1.00	1.00	1.00	1.00	1.00	0.827613	1.000000	-
Rv3326	-	21	287.3	279.2	323.6	302.1	293.2	306.5	-0.055	-0.096	0.114	0.016	-0.026	0.037	377.1	344.9	399.8	396.6	362.2	367.8	0.76	0.81	0.81	0.76	0.81	0.83	0.998710	1.000000	-
Rv3327	-	19	164.7	201.8	180.9	188.7	184.0	206.7	-0.184	0.101	-0.052	0.007	-0.029	0.135	177.1	207.3	196.5	199.2	184.0	218.2	0.93	0.97	0.92	0.95	1.00	0.95	0.606632	1.000000	-
Rv3328c	sigJ	12	130.7	141.5	136.4	157.1	127.9	139.9	-0.085	0.026	-0.025	0.171	-0.115	0.010	142.6	161.7	148.8	171.3	127.9	139.9	0.92	0.88	0.92	0.92	1.00	1.00	0.512911	1.000000	-
Rv3329	-	20	176.1	187.2	185.6	200.3	178.5	175.5	-0.061	0.025	0.013	0.120	-0.042	-0.065	192.1	202.4	212.1	200.3	198.3	195.0	0.92	0.93	0.88	1.00	0.90	0.90	0.314402	1.000000	-
Rv3330	dacB1	16	122.9	130.4	140.9	142.3	169.5	167.1	-0.235	-0.153	-0.045	-0.031	0.213	0.194	125.6	139.1	150.3	151.8	169.5	167.1	0.98	0.94	0.94	0.94	1.00	1.00	0.256430	1.000000	-
Rv3331	sugI	22	188.6	167.1	171.1	129.7	141.5	153.5	0.243	0.073	0.107	-0.280	-0.159	-0.046	239.4	193.5	198.2	164.6	163.8	168.8	0.79	0.86	0.86	0.79	0.86	0.91	0.636103	1.000000	-
Rv3332	nagA	5	225.5	164.2	175.8	156.9	157.6	176.9	0.347	-0.098	-0.002	-0.162	-0.156	0.006	225.5	164.2	175.8	156.9	157.6	176.9	1.00	1.00	1.00	1.00	1.00	1.00	0.565285	1.000000	-
Rv3333c	-	10	91.0	81.5	72.2	86.9	102.9	99.0	0.031	-0.119	-0.283	-0.031	0.200	0.148	113.8	95.9	90.3	100.3	114.4	110.1	0.80	0.85	0.80	0.87	0.90	0.90	0.971629	1.000000	-
Rv3334	-	8	182.3	170.0	179.8	176.5	204.9	195.3	-0.019	-0.117	-0.039	-0.064	0.145	0.078	182.3	170.0	179.8	176.5	204.9	195.3	1.00	1.00	1.00	1.00	1.00	1.00	0.981076	1.000000	-
Rv3335c	-	11	93.8	68.5	72.4	71.2	83.7	100.3	0.189	-0.237	-0.162	-0.186	0.034	0.281	103.2	75.4	83.9	73.4	92.1	110.3	0.91	0.91	0.86	0.97	0.91	0.91	0.512477	1.000000	-
Rv3336c	trpS	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3337	-	9	67.8	68.6	50.0	83.1	76.7	78.2	-0.057	-0.042	-0.461	0.218	0.110	0.136	114.5	137.1	128.6	160.3	138.1	93.9	0.59	0.50	0.39	0.52	0.56	0.83	0.476422	1.000000	-
Rv3338	-	4	70.9	62.5	50.7	54.8	84.5	42.5	0.202	0.032	-0.244	-0.142	0.440	-0.474	94.5	71.4	58.0	73.1	84.5	56.7	0.75	0.88	0.88	0.75	1.00	0.75	0.572054	1.000000	-
Rv3339c	icd1	23	82.4	108.5	75.3	95.0	95.4	108.1	-0.181	0.195	-0.304	0.013	0.019	0.190	118.5	134.9	108.2	117.1	125.4	134.4	0.70	0.80	0.70	0.81	0.76	0.80	0.902410	1.000000	-
Rv3340	metC	15	272.5	250.8	289.5	198.5	185.3	241.9	0.181	0.064	0.267	-0.266	-0.363	0.013	272.5	250.8	289.5	198.5	185.3	241.9	1.00	1.00	1.00	1.00	1.00	1.00	0.225887	1.000000	-
Rv3341	metX	14	55.4	56.3	52.8	30.2	32.7	53.0	0.224	0.244	0.160	-0.554	-0.457	0.164	72.7	68.5	70.4	37.3	43.6	57.0	0.76	0.82	0.75	0.81	0.75	0.93	0.005500	0.086405	-
Rv3342	-	8	73.0	60.6	58.1	72.8	61.3	69.6	0.138	-0.113	-0.168	0.135	-0.097	0.073	83.5	64.6	84.6	83.3	65.4	92.8	0.88	0.94	0.69	0.88	0.94	0.75	0.537442	1.000000	-
Rv3343c	PPE54	146	44.2	42.7	42.3	44.7	42.7	49.4	-0.004	-0.048	-0.060	0.010	-0.050	0.141	121.8	108.5	118.9	109.3	104.7	113.6	0.36	0.39	0.36	0.41	0.41	0.43	0.995185	1.000000	-
Rv3344c	PE_PGRS49	6	217.8	192.0	244.2	226.1	195.5	199.3	0.035	-0.143	0.196	0.088	-0.118	-0.090	245.0	230.4	266.4	271.3	195.5	199.3	0.89	0.83	0.92	0.83	1.00	1.00	0.754523	1.000000	-
Rv3345c	PE_PGRS50	45	252.8	230.1	227.4	200.3	201.9	204.6	0.200	0.066	0.050	-0.129	-0.118	-0.099	273.1	276.1	252.6	241.4	224.4	227.3	0.93	0.83	0.90	0.83	0.90	0.90	0.248946	1.000000	-
Rv3346c	-	3	295.0	276.1	279.5	319.8	330.4	336.6	-0.053	-0.147	-0.130	0.062	0.108	0.134	295.0	276.1	335.4	319.8	495.6	504.9	1.00	1.00	0.83	1.00	0.67	0.67	0.175927	1.000000	-
Rv3347c	PPE55	112	100.6	103.8	96.7	99.4	100.4	116.6	-0.031	0.012	-0.086	-0.048	-0.034	0.173	146.3	129.9	148.3	135.7	125.6	142.8	0.69	0.80	0.65	0.73	0.80	0.82	0.056545	0.514543	-
Rv3348	-	3	331.9	347.2	279.3	243.4	251.8	261.9	0.212	0.276	-0.033	-0.228	-0.180	-0.124	331.9	347.2	279.3	243.4	251.8	261.9	1.00	1.00	1.00	1.00	1.00	1.00	0.916512	1.000000	-
Rv3349c	-	2	370.3	303.7	299.9	338.2	304.6	292.1	0.216	-0.066	-0.084	0.087	-0.062	-0.121	370.3	303.7	299.9	338.2	304.6	292.1	1.00	1.00	1.00	1.00	1.00	1.00	0.969216	1.000000	-
Rv3350c	PPE56	121	121.6	123.7	120.2	127.2	119.4	128.3	-0.020	0.004	-0.036	0.042	-0.046	0.054	181.7	166.4	179.6	179.6	160.5	160.1	0.67	0.74	0.67	0.71	0.74	0.80	0.606511	1.000000	-
Rv3351c	-	15	311.8	328.4	305.7	342.8	307.4	291.0	-0.012	0.061	-0.040	0.122	-0.032	-0.111	311.8	328.4	305.7	342.8	307.4	291.0	1.00	1.00	1.00	1.00	1.00	1.00	0.944441	1.000000	-
Rv3352c	-	2	314.8	319.0	307.6	359.0	285.6	283.7	0.014	0.033	-0.018	0.201	-0.124	-0.133	314.8	319.0	307.6	359.0	285.6	283.7	1.00	1.00	1.00	1.00	1.00	1.00	0.998230	1.000000	-
Rv3353c	-	3	259.2	281.4	199.2	201.7	266.8	231.7	0.109	0.225	-0.263	-0.245	0.150	-0.050	259.2	281.4	199.2	201.7	266.8	231.7	1.00	1.00	1.00	1.00	1.00	1.00	0.341726	1.000000	-
Rv3354	-	5	517.8	534.4	641.7	535.5	482.4	456.0	-0.028	0.017	0.279	0.020	-0.129	-0.209	554.8	534.4	713.0	535.5	482.4	456.0	0.93	1.00	0.90	1.00	1.00	1.00	0.934680	1.000000	-
Rv3355c	-	3	147.0	180.3	183.5	145.5	165.2	187.6	-0.189	0.098	0.122	-0.202	-0.025	0.153	220.4	270.5	367.0	218.3	495.7	562.7	0.67	0.67	0.50	0.67	0.33	0.33	0.589350	1.000000	-
Rv3356c	folD	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3357	-	5	140.2	185.9	155.1	145.6	133.2	160.5	-0.126	0.269	0.015	-0.073	-0.197	0.063	140.2	185.9	155.1	145.6	133.2	160.5	1.00	1.00	1.00	1.00	1.00	1.00	0.905176	1.000000	-
Rv3358	-	2	139.3	142.2	114.4	102.8	102.5	93.9	0.256	0.285	-0.017	-0.165	-0.169	-0.289	209.0	189.6	228.8	205.5	136.7	187.8	0.67	0.75	0.50	0.50	0.75	0.50	0.996818	1.000000	-
Rv3359	-	16	250.2	267.7	251.7	263.9	258.4	251.2	-0.039	0.056	-0.030	0.037	0.007	-0.033	255.6	276.3	251.7	269.5	258.4	251.2	0.98	0.97	1.00	0.98	1.00	1.00	0.941664	1.000000	-
Rv3360	-	2	111.3	135.0	87.4	107.8	116.9	115.5	-0.013	0.255	-0.344	-0.057	0.055	0.038	111.3	135.0	87.4	107.8	116.9	115.5	1.00	1.00	1.00	1.00	1.00	1.00	0.617136	1.000000	-
Rv3361c	-	5	62.7	51.8	58.7	64.1	90.6	73.7	-0.088	-0.340	-0.176	-0.058	0.410	0.130	94.0	86.4	97.8	106.9	129.4	73.7	0.67	0.60	0.60	0.60	0.70	1.00	0.475512	1.000000	-
Rv3362c	-	6	74.6	57.9	95.0	77.6	74.4	82.4	-0.043	-0.382	0.286	0.011	-0.046	0.092	134.3	99.3	162.8	199.6	127.6	141.2	0.56	0.58	0.58	0.39	0.58	0.58	0.969793	1.000000	-
Rv3363c	-	7	144.8	139.9	125.6	147.1	142.9	173.8	-0.009	-0.057	-0.206	0.014	-0.027	0.247	144.8	163.2	135.3	171.6	142.9	187.2	1.00	0.86	0.93	0.86	1.00	0.93	0.246645	1.000000	-
Rv3364c	-	4	120.6	195.8	111.7	156.3	157.2	142.0	-0.278	0.399	-0.384	0.083	0.091	-0.050	131.6	195.8	148.9	156.3	209.6	142.0	0.92	1.00	0.75	1.00	0.75	1.00	0.310942	1.000000	-
Rv3365c	-	31	299.3	282.0	283.2	279.3	265.4	266.8	0.098	0.013	0.019	-0.000	-0.072	-0.065	331.4	306.7	297.6	282.4	265.4	275.6	0.90	0.92	0.95	0.99	1.00	0.97	0.120481	0.823148	-
Rv3366	spoU	5	211.2	204.8	230.4	211.9	204.8	222.1	-0.020	-0.063	0.103	-0.015	-0.063	0.051	264.1	204.8	230.4	211.9	256.0	277.6	0.80	1.00	1.00	1.00	0.80	0.80	0.227689	1.000000	-
Rv3367	PE_PGRS51	20	168.2	174.9	182.0	157.4	157.1	174.8	-0.007	0.047	0.104	-0.100	-0.103	0.047	183.5	218.6	196.8	178.2	179.5	184.0	0.92	0.80	0.93	0.88	0.88	0.95	0.616688	1.000000	-
Rv3368c	-	8	102.2	121.7	158.4	120.6	103.2	112.5	-0.219	0.022	0.389	0.010	-0.205	-0.086	111.5	121.7	169.0	120.6	103.2	112.5	0.92	1.00	0.94	1.00	1.00	1.00	0.614345	1.000000	-
Rv3369	-	6	68.6	76.4	87.1	79.7	92.5	97.3	-0.267	-0.122	0.056	-0.065	0.138	0.207	68.6	76.4	87.1	79.7	100.9	97.3	1.00	1.00	1.00	1.00	0.92	1.00	0.600772	1.000000	-
Rv3370c	dnaE2	33	157.8	153.3	164.3	152.8	144.1	141.2	0.050	0.010	0.107	0.005	-0.077	-0.106	179.6	165.9	177.8	182.3	172.9	163.5	0.88	0.92	0.92	0.84	0.83	0.86	0.626401	1.000000	-
Rv3371	-	23	108.3	81.5	100.1	87.8	92.1	113.7	0.148	-0.242	0.040	-0.140	-0.074	0.215	128.9	96.1	139.6	118.8	108.7	141.4	0.84	0.85	0.72	0.74	0.85	0.80	0.432061	1.000000	-
Rv3372	otsB2	9	1.2	13.0	2.4	6.0	8.7	5.0	-0.833	0.702	-0.577	-0.004	0.309	-0.143	32.8	117.1	21.8	54.4	39.2	45.3	0.04	0.11	0.11	0.11	0.22	0.11	0.210973	1.000000	-
Rv3373	echA18	3	108.3	118.0	120.8	86.9	106.8	87.3	0.047	0.165	0.198	-0.256	0.027	-0.248	108.3	118.0	120.8	86.9	106.8	87.3	1.00	1.00	1.00	1.00	1.00	1.00	0.673064	1.000000	-
Rv3374	echA18.1	2	236.2	334.5	248.6	239.6	248.1	287.8	-0.167	0.326	-0.095	-0.147	-0.098	0.113	236.2	334.5	248.6	239.6	248.1	287.8	1.00	1.00	1.00	1.00	1.00	1.00	0.523336	1.000000	-
Rv3375	amiD	21	136.2	115.6	106.6	119.7	115.9	93.8	0.239	0.011	-0.100	0.060	0.015	-0.276	171.7	142.8	140.0	153.9	135.2	112.6	0.79	0.81	0.76	0.78	0.86	0.83	0.931664	1.000000	-
Rv3376	-	8	180.1	197.5	200.8	192.4	168.0	178.3	-0.047	0.083	0.106	0.046	-0.145	-0.061	196.5	197.5	200.8	192.4	168.0	178.3	0.92	1.00	1.00	1.00	1.00	1.00	0.799089	1.000000	-
Rv3377c	-	50	43.0	41.2	42.9	33.5	38.4	33.7	0.133	0.076	0.128	-0.186	-0.011	-0.176	82.7	61.4	79.4	61.2	59.1	53.6	0.52	0.67	0.54	0.55	0.65	0.63	0.263178	1.000000	-
Rv3378c	-	37	11.0	12.6	16.6	15.4	14.7	22.8	-0.357	-0.218	0.073	-0.011	-0.056	0.436	28.4	30.2	49.1	37.9	30.3	40.1	0.39	0.42	0.34	0.41	0.49	0.57	0.084898	0.680203	-
Rv3379c	dxs2	26	128.9	106.4	127.7	107.5	115.0	118.6	0.130	-0.135	0.117	-0.121	-0.028	0.015	152.4	125.8	144.4	125.2	132.9	137.1	0.85	0.85	0.88	0.86	0.87	0.87	0.986641	1.000000	-
Rv3380c	-	21	289.2	298.1	319.8	306.7	278.7	284.4	-0.034	0.009	0.109	0.050	-0.086	-0.057	379.6	357.7	419.7	378.8	334.5	331.8	0.76	0.83	0.76	0.81	0.83	0.86	0.998408	1.000000	-
Rv3381c	-	4	220.8	247.5	245.0	240.0	237.8	172.8	-0.041	0.120	0.106	0.077	0.063	-0.386	220.8	247.5	245.0	240.0	237.8	172.8	1.00	1.00	1.00	1.00	1.00	1.00	0.905053	1.000000	-
Rv3382c	lytB1	10	195.4	189.9	187.9	181.6	184.2	200.5	0.040	0.000	-0.015	-0.063	-0.043	0.076	244.2	199.9	197.8	181.6	204.6	222.7	0.80	0.95	0.95	1.00	0.90	0.90	0.250238	1.000000	-
Rv3383c	idsB	17	110.3	114.3	116.7	99.9	104.3	100.2	0.034	0.083	0.112	-0.102	-0.043	-0.099	134.0	134.0	158.7	124.3	114.4	121.6	0.82	0.85	0.74	0.80	0.91	0.82	0.937163	1.000000	-
Rv3384c	-	2	454.9	347.5	377.3	490.4	508.1	315.7	0.129	-0.255	-0.138	0.236	0.287	-0.391	454.9	347.5	377.3	490.4	508.1	315.7	1.00	1.00	1.00	1.00	1.00	1.00	0.029422	0.319870	-
Rv3385c	-	3	197.4	188.7	225.2	176.2	168.8	205.1	0.027	-0.036	0.213	-0.132	-0.192	0.082	197.4	188.7	225.2	176.2	168.8	205.1	1.00	1.00	1.00	1.00	1.00	1.00	0.949110	1.000000	-
Rv3386	-	8	73.7	121.4	71.8	90.9	110.9	106.4	-0.358	0.326	-0.392	-0.073	0.200	0.144	88.4	121.4	82.1	109.1	118.3	121.7	0.83	1.00	0.88	0.83	0.94	0.88	0.296937	1.000000	-
Rv3387	-	5	104.9	93.7	90.5	108.1	102.2	96.7	0.075	-0.080	-0.128	0.117	0.038	-0.037	112.4	117.1	100.6	115.9	113.5	96.7	0.93	0.80	0.90	0.93	0.90	1.00	0.956698	1.000000	-
Rv3388	PE_PGRS52	19	186.5	187.3	186.2	179.4	170.5	179.4	0.038	0.044	0.035	-0.017	-0.088	-0.017	247.3	215.7	235.8	249.4	196.3	184.3	0.75	0.87	0.79	0.72	0.87	0.97	0.149055	0.944275	-
Rv3389c	-	7	230.5	248.9	221.0	236.8	257.0	244.8	-0.056	0.053	-0.115	-0.018	0.098	0.029	230.5	248.9	221.0	236.8	257.0	244.8	1.00	1.00	1.00	1.00	1.00	1.00	0.996682	1.000000	-
Rv3390	lpqD	11	295.0	287.5	290.4	318.2	303.5	308.0	-0.026	-0.062	-0.048	0.081	0.014	0.036	295.0	287.5	319.4	318.2	303.5	308.0	1.00	1.00	0.91	1.00	1.00	1.00	0.673107	1.000000	-
Rv3391	acrA1	30	250.7	207.8	235.9	222.2	212.8	204.5	0.170	-0.095	0.084	-0.001	-0.062	-0.118	268.6	222.7	262.1	232.5	228.0	227.2	0.93	0.93	0.90	0.96	0.93	0.90	0.953792	1.000000	-
Rv3392c	cmaA1	12	99.3	71.8	109.6	75.4	80.8	84.6	0.182	-0.260	0.319	-0.193	-0.100	-0.037	127.6	86.1	125.3	90.4	96.9	112.8	0.78	0.83	0.88	0.83	0.83	0.75	0.754016	1.000000	-
Rv3393	iunH	9	210.4	192.9	237.0	176.1	174.8	158.6	0.131	0.009	0.300	-0.119	-0.129	-0.265	247.0	217.0	266.7	190.2	185.1	167.9	0.85	0.89	0.89	0.93	0.94	0.94	0.985794	1.000000	-
Rv3394c	-	10	114.8	102.5	113.8	109.3	102.7	127.8	0.036	-0.120	0.024	-0.031	-0.117	0.185	114.8	107.9	113.8	121.5	114.2	142.0	1.00	0.95	1.00	0.90	0.90	0.90	0.286610	1.000000	-
Rv3395c	-	4	52.6	42.0	63.2	36.6	34.7	47.6	0.172	-0.120	0.416	-0.297	-0.364	0.040	70.1	56.0	63.2	48.8	46.3	63.4	0.75	0.75	1.00	0.75	0.75	0.75	0.823729	1.000000	-
Rv3395A	-	8	71.8	66.9	80.2	71.6	73.8	71.8	-0.016	-0.111	0.132	-0.021	0.021	-0.016	71.8	66.9	91.6	71.6	73.8	71.8	1.00	1.00	0.88	1.00	1.00	1.00	0.588082	1.000000	-
Rv3396c	guaA	15	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3397c	phyA	17	109.6	101.2	115.0	89.1	81.0	97.2	0.142	0.032	0.208	-0.142	-0.272	-0.023	133.1	122.9	134.8	105.7	83.5	100.1	0.82	0.82	0.85	0.84	0.97	0.97	0.197501	1.000000	-
Rv3398c	idsA1	8	98.0	109.9	117.2	69.3	104.7	64.2	0.059	0.217	0.305	-0.412	0.149	-0.514	123.8	135.3	144.2	92.4	119.6	79.0	0.79	0.81	0.81	0.75	0.88	0.81	0.685292	1.000000	-
Rv3399	-	15	53.7	61.6	60.1	71.1	63.5	65.2	-0.201	-0.020	-0.054	0.172	0.021	0.055	63.6	71.1	75.1	71.1	82.9	67.4	0.84	0.87	0.80	1.00	0.77	0.97	0.018391	0.221687	-
Rv3400	-	11	147.6	169.3	165.4	162.9	181.5	167.4	-0.162	0.031	-0.002	-0.024	0.128	0.015	167.9	186.3	191.5	179.2	199.6	167.4	0.88	0.91	0.86	0.91	0.91	1.00	0.888595	1.000000	-
Rv3401	-	33	285.3	276.1	265.0	257.2	263.2	239.0	0.108	0.062	0.003	-0.038	-0.006	-0.142	321.0	289.3	296.4	265.3	280.2	254.4	0.89	0.95	0.89	0.97	0.94	0.94	0.739304	1.000000	-
Rv3402c	-	25	245.3	250.8	253.5	237.9	254.3	242.0	-0.012	0.020	0.035	-0.055	0.040	-0.031	252.0	250.8	253.5	247.8	254.3	252.1	0.97	1.00	1.00	0.96	1.00	0.96	0.537605	1.000000	-
Rv3403c	-	21	389.3	381.8	391.7	384.1	390.0	349.9	0.030	0.002	0.039	0.011	0.033	-0.122	408.8	400.9	421.9	403.3	390.0	367.4	0.95	0.95	0.93	0.95	1.00	0.95	0.941905	1.000000	-
Rv3404c	-	9	193.2	189.9	174.7	190.0	178.9	204.1	0.035	0.011	-0.106	0.012	-0.074	0.112	193.2	189.9	174.7	190.0	178.9	204.1	1.00	1.00	1.00	1.00	1.00	1.00	0.995481	1.000000	-
Rv3405c	-	7	281.6	270.9	309.7	251.9	299.7	267.3	0.007	-0.048	0.142	-0.150	0.096	-0.067	281.6	270.9	309.7	293.9	299.7	267.3	1.00	1.00	1.00	0.86	1.00	1.00	0.643231	1.000000	-
Rv3406	-	14	273.9	248.9	252.0	248.5	242.4	223.1	0.140	0.004	0.022	0.002	-0.033	-0.150	280.6	258.1	271.4	254.5	242.4	223.1	0.98	0.96	0.93	0.98	1.00	1.00	0.932978	1.000000	-
Rv3407	-	2	190.6	232.0	193.8	197.1	255.5	263.1	-0.215	0.062	-0.191	-0.168	0.198	0.240	190.6	232.0	193.8	197.1	255.5	263.1	1.00	1.00	1.00	1.00	1.00	1.00	0.891531	1.000000	-
Rv3408	-	7	281.9	257.8	290.7	268.5	273.1	288.6	0.026	-0.101	0.070	-0.043	-0.019	0.059	328.9	300.8	290.7	268.5	318.6	310.8	0.86	0.86	1.00	1.00	0.86	0.93	0.529033	1.000000	-
Rv3409c	choD	19	273.8	226.6	293.6	195.0	224.7	189.8	0.223	-0.045	0.322	-0.257	-0.057	-0.294	306.0	232.8	301.5	205.8	244.0	195.0	0.89	0.97	0.97	0.95	0.92	0.97	0.419820	1.000000	-
Rv3410c	guaB3	12	169.9	133.6	147.8	39.4	58.5	115.2	0.595	0.260	0.401	-1.381	-0.867	0.055	185.3	145.7	161.3	52.6	70.2	125.7	0.92	0.92	0.92	0.75	0.83	0.92	0.000385	0.008492	-
Rv3411c	guaB2	11	0.5	0.0	0.0	0.0	0.0	0.0	0.113	-0.024	-0.024	-0.024	-0.024	-0.024	16.4	0.0	0.0	0.0	0.0	0.0	0.03	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3412	-	9	74.3	94.4	90.9	137.4	114.9	94.9	-0.421	-0.095	-0.147	0.424	0.176	-0.087	80.2	99.9	102.2	137.4	114.9	94.9	0.93	0.94	0.89	1.00	1.00	1.00	0.187067	1.000000	-
Rv3413c	-	4	281.6	181.1	205.3	225.8	225.5	188.7	0.362	-0.261	-0.085	0.050	0.048	-0.203	281.6	181.1	205.3	225.8	225.5	188.7	1.00	1.00	1.00	1.00	1.00	1.00	0.947321	1.000000	-
Rv3414c	sigD	7	220.2	233.1	189.5	185.9	181.3	229.7	0.090	0.170	-0.122	-0.149	-0.184	0.149	256.9	272.0	204.0	216.9	195.2	247.3	0.86	0.86	0.93	0.86	0.93	0.93	0.898161	1.000000	-
Rv3415c	-	9	438.4	391.9	380.9	372.9	387.3	380.5	0.159	-0.000	-0.041	-0.071	-0.017	-0.042	514.6	503.9	428.5	479.5	497.9	489.2	0.85	0.78	0.89	0.78	0.78	0.78	0.966451	1.000000	-
Rv3416	whiB3	4	256.2	273.3	255.6	298.2	333.6	251.2	-0.116	-0.024	-0.119	0.099	0.259	-0.144	256.2	273.3	255.6	298.2	333.6	251.2	1.00	1.00	1.00	1.00	1.00	1.00	0.878373	1.000000	-
Rv3417c	groEL	14	86.3	102.4	57.4	64.7	77.4	87.4	0.115	0.349	-0.433	-0.274	-0.032	0.133	134.2	119.4	76.6	90.6	86.7	106.4	0.64	0.86	0.75	0.71	0.89	0.82	0.288230	1.000000	-
Rv3418c	groES	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3419c	gcp	12	59.0	62.2	50.3	58.4	39.0	53.4	0.126	0.194	-0.086	0.111	-0.417	-0.008	68.6	67.8	60.3	67.8	44.5	53.4	0.86	0.92	0.83	0.86	0.88	1.00	0.340461	1.000000	-
Rv3420c	rimI	10	89.3	134.4	73.5	134.4	125.2	117.9	-0.317	0.247	-0.582	0.248	0.149	0.066	89.3	134.4	91.8	134.4	125.2	117.9	1.00	1.00	0.80	1.00	1.00	1.00	0.001490	0.028441	-
Rv3421c	-	11	50.5	59.7	34.8	61.6	33.3	49.7	0.059	0.281	-0.421	0.321	-0.476	0.039	59.5	62.6	45.0	67.7	38.6	54.7	0.85	0.95	0.77	0.91	0.86	0.91	0.115245	0.799142	-
Rv3422c	-	5	35.9	32.6	43.7	49.0	13.2	21.1	0.124	0.002	0.374	0.523	-1.048	-0.529	49.0	40.8	62.4	49.0	18.8	35.1	0.73	0.80	0.70	1.00	0.70	0.60	0.010549	0.144370	-
Rv3423c	alr	18	0.4	0.0	0.0	0.0	0.0	0.0	0.096	-0.020	-0.020	-0.020	-0.020	-0.020	22.6	0.0	0.0	0.0	0.0	0.0	0.02	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3424c	-	8	105.0	117.8	113.3	127.5	124.3	106.7	-0.135	0.024	-0.030	0.134	0.099	-0.112	114.5	125.6	120.8	133.0	124.3	113.8	0.92	0.94	0.94	0.96	1.00	0.94	0.978652	1.000000	-
Rv3425	PPE57	18	75.1	75.6	67.6	77.0	88.0	91.0	-0.069	-0.060	-0.212	-0.036	0.146	0.192	92.2	97.2	86.9	92.3	121.8	109.2	0.81	0.78	0.78	0.83	0.72	0.83	0.587878	1.000000	-
Rv3426	PPE58	21	13.0	24.7	24.3	29.1	23.6	24.1	-0.644	0.078	0.058	0.277	0.026	0.048	39.0	54.6	48.5	55.5	41.4	46.0	0.33	0.45	0.50	0.52	0.57	0.52	0.423267	1.000000	-
Rv3427c	-	7	103.3	98.9	76.1	96.4	89.3	102.1	0.124	0.064	-0.292	0.030	-0.076	0.109	103.3	98.9	88.8	96.4	89.3	102.1	1.00	1.00	0.86	1.00	1.00	1.00	0.779568	1.000000	-
Rv3428c	-	15	81.3	82.5	102.9	82.3	96.5	69.4	-0.074	-0.054	0.249	-0.057	0.161	-0.288	98.8	88.4	123.5	94.9	107.2	83.2	0.82	0.93	0.83	0.87	0.90	0.83	0.900904	1.000000	-
Rv3429	PPE59	25	8.9	7.0	8.0	11.0	7.6	8.5	0.043	-0.175	-0.053	0.247	-0.104	0.004	37.1	26.7	33.4	37.5	23.6	20.3	0.24	0.26	0.24	0.29	0.32	0.42	0.353317	1.000000	-
Rv3430c	-	20	266.3	236.4	242.8	249.8	237.9	207.6	0.146	-0.022	0.016	0.056	-0.013	-0.206	280.3	242.5	262.5	263.0	250.4	207.6	0.95	0.97	0.93	0.95	0.95	1.00	0.897139	1.000000	-
Rv3431c	-	9	203.2	165.5	175.0	189.3	186.5	195.7	0.125	-0.163	-0.085	0.026	0.005	0.073	238.5	229.2	262.5	243.4	197.4	251.6	0.85	0.72	0.67	0.78	0.94	0.78	0.768635	1.000000	-
Rv3432c	gadB	21	190.6	184.4	187.2	183.8	204.3	185.3	0.010	-0.036	-0.016	-0.041	0.108	-0.030	193.7	193.7	191.7	192.9	209.3	194.5	0.98	0.95	0.98	0.95	0.98	0.95	0.950636	1.000000	-
Rv3433c	-	7	283.1	286.0	253.6	273.0	231.2	250.8	0.105	0.119	-0.051	0.053	-0.182	-0.067	313.0	308.0	273.1	286.7	323.7	292.6	0.90	0.93	0.93	0.95	0.71	0.86	0.798557	1.000000	-
Rv3434c	-	11	191.7	177.3	187.2	158.1	166.6	244.6	0.030	-0.079	-0.003	-0.240	-0.166	0.374	218.1	185.7	228.8	163.0	183.3	244.6	0.88	0.95	0.82	0.97	0.91	1.00	0.412196	1.000000	-
Rv3435c	-	12	151.3	130.3	125.0	144.2	165.3	176.9	0.023	-0.185	-0.243	-0.044	0.146	0.242	227.0	164.6	187.5	162.3	180.3	223.4	0.67	0.79	0.67	0.89	0.92	0.79	0.432030	1.000000	-
Rv3436c	glmS	25	0.0	0.0	0.9	0.0	0.0	0.0	-0.041	-0.041	0.191	-0.041	-0.041	-0.041	0.0	0.0	21.8	0.0	0.0	0.0	0.00	0.00	0.04	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3437	-	8	346.0	316.1	341.0	335.4	317.8	319.5	0.070	-0.058	0.050	0.026	-0.050	-0.043	377.4	316.1	363.7	335.4	317.8	319.5	0.92	1.00	0.94	1.00	1.00	1.00	0.928070	1.000000	-
Rv3438	-	12	168.2	127.4	152.9	129.7	142.2	141.6	0.220	-0.167	0.087	-0.142	-0.015	-0.020	216.3	145.6	203.9	161.0	162.5	161.9	0.78	0.88	0.75	0.81	0.88	0.88	0.978706	1.000000	-
Rv3439c	-	10	297.6	319.9	316.8	317.2	359.7	304.7	-0.100	0.003	-0.011	-0.009	0.169	-0.067	297.6	319.9	333.4	317.2	359.7	304.7	1.00	1.00	0.95	1.00	1.00	1.00	0.890772	1.000000	-
Rv3440c	-	7	688.7	549.1	673.3	666.8	567.3	515.2	0.174	-0.151	0.141	0.127	-0.104	-0.242	688.7	549.1	673.3	666.8	567.3	515.2	1.00	1.00	1.00	1.00	1.00	1.00	0.908490	1.000000	-
Rv3441c	mrsA	14	0.0	0.4	0.0	0.0	0.0	0.0	-0.018	0.086	-0.018	-0.018	-0.018	-0.018	0.0	10.4	0.0	0.0	0.0	0.0	0.00	0.04	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3442c	rpsI	6	0.0	0.8	1.0	1.4	0.0	0.0	-0.152	0.071	0.123	0.213	-0.152	-0.152	0.0	10.0	12.6	25.9	0.0	0.0	0.00	0.08	0.08	0.06	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3443c	rplM	6	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3444c	esxT	3	247.1	164.9	221.9	244.6	229.5	272.0	0.102	-0.468	-0.051	0.087	-0.003	0.237	247.1	164.9	221.9	244.6	229.5	272.0	1.00	1.00	1.00	1.00	1.00	1.00	0.796647	1.000000	-
Rv3445c	esxU	3	152.8	120.5	152.9	159.8	137.5	160.9	0.050	-0.280	0.051	0.113	-0.097	0.123	171.9	120.5	152.9	159.8	137.5	160.9	0.89	1.00	1.00	1.00	1.00	1.00	0.973164	1.000000	-
Rv3446c	-	14	194.4	175.5	183.1	179.6	189.2	158.1	0.108	-0.035	0.024	-0.003	0.070	-0.182	209.4	182.0	183.1	179.6	189.2	170.2	0.93	0.96	1.00	1.00	1.00	0.93	0.413509	1.000000	-
Rv3447c	-	46	109.1	109.4	96.9	106.8	93.4	108.6	0.066	0.069	-0.098	0.036	-0.148	0.059	150.6	134.2	129.2	140.4	119.3	124.8	0.72	0.82	0.75	0.76	0.78	0.87	0.770516	1.000000	-
Rv3448	-	22	88.7	70.5	94.1	86.2	66.1	86.5	0.106	-0.204	0.187	0.067	-0.291	0.073	110.4	91.3	118.3	103.4	80.8	102.9	0.80	0.77	0.80	0.83	0.82	0.84	0.944828	1.000000	-
Rv3449	mycP4	17	176.9	173.0	189.4	163.6	173.9	147.9	0.049	0.018	0.145	-0.060	0.025	-0.201	200.5	196.1	222.0	189.7	184.7	167.6	0.88	0.88	0.85	0.86	0.94	0.88	0.995459	1.000000	-
Rv3450c	-	12	373.5	341.1	345.1	346.2	333.9	290.0	0.141	0.012	0.028	0.033	-0.018	-0.219	407.4	409.3	360.1	377.7	364.3	316.3	0.92	0.83	0.96	0.92	0.92	0.92	0.943531	1.000000	-
Rv3451	cut3	15	316.7	269.2	327.0	323.4	284.9	287.2	0.070	-0.160	0.116	0.100	-0.080	-0.069	339.3	278.5	327.0	330.7	284.9	287.2	0.93	0.97	1.00	0.98	1.00	1.00	0.749216	1.000000	-
Rv3452	cut4	7	377.6	372.8	410.1	409.0	320.4	400.7	-0.016	-0.034	0.102	0.098	-0.249	0.069	396.5	372.8	410.1	409.0	320.4	400.7	0.95	1.00	1.00	1.00	1.00	1.00	0.969754	1.000000	-
Rv3453	-	9	192.6	195.2	145.5	162.7	158.1	129.0	0.227	0.246	-0.166	-0.010	-0.050	-0.333	192.6	195.2	154.0	175.7	177.8	129.0	1.00	1.00	0.94	0.93	0.89	1.00	0.341951	1.000000	-
Rv3454	-	24	10.3	11.2	14.0	13.5	16.6	13.7	-0.253	-0.165	0.058	0.022	0.244	0.041	30.8	23.5	37.2	26.2	36.1	27.5	0.33	0.48	0.38	0.51	0.46	0.50	0.265560	1.000000	-
Rv3455c	truA	12	37.9	37.6	35.7	35.8	18.8	32.3	0.174	0.165	0.098	0.102	-0.676	-0.027	54.6	50.2	53.5	49.6	34.7	43.1	0.69	0.75	0.67	0.72	0.54	0.75	0.749478	1.000000	-
Rv3456c	rplQ	6	0.0	0.8	0.0	0.0	0.0	0.0	-0.040	0.183	-0.040	-0.040	-0.040	-0.040	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.08	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3457c	rpoA	11	0.4	0.0	0.0	0.0	0.7	0.0	0.050	-0.048	-0.048	-0.048	0.131	-0.048	11.6	0.0	0.0	0.0	14.5	0.0	0.03	0.00	0.00	0.00	0.05	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3458c	rpsD	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3459c	rpsK	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3460c	rpsM	8	2.8	3.1	0.0	3.5	6.5	5.1	-0.127	-0.063	-0.767	-0.000	0.440	0.243	22.3	16.8	0.0	21.1	26.2	27.0	0.12	0.19	0.00	0.17	0.25	0.19	0.541708	1.000000	-
Rv3461c	rpmJ	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3462c	infA	3	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3463	-	17	92.6	105.1	104.2	89.5	94.4	88.9	-0.047	0.127	0.116	-0.093	-0.020	-0.102	102.6	119.1	118.1	108.7	100.3	94.5	0.90	0.88	0.88	0.82	0.94	0.94	0.793247	1.000000	-
Rv3464	rmlB	20	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3465	rmlC	8	0.5	0.0	0.0	0.0	0.0	0.0	0.110	-0.023	-0.023	-0.023	-0.023	-0.023	11.6	0.0	0.0	0.0	0.0	0.0	0.04	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3466	-	8	232.7	193.6	247.8	199.5	201.5	225.8	0.100	-0.159	0.189	-0.118	-0.103	0.057	242.8	221.3	264.3	227.9	230.3	258.0	0.96	0.88	0.94	0.88	0.88	0.88	0.975552	1.000000	-
Rv3467	-	14	195.2	193.2	217.2	195.9	186.7	202.3	-0.023	-0.037	0.128	-0.018	-0.085	0.027	227.7	208.1	264.4	235.0	209.1	246.2	0.86	0.93	0.82	0.83	0.89	0.82	0.964101	1.000000	-
Rv3468c	-	16	132.0	118.1	135.1	117.3	108.4	131.1	0.091	-0.064	0.123	-0.073	-0.183	0.081	154.5	171.8	154.4	148.2	119.6	155.4	0.85	0.69	0.88	0.79	0.91	0.84	0.375093	1.000000	-
Rv3469c	mhpE	12	125.7	109.2	93.5	104.9	109.3	101.2	0.219	0.024	-0.189	-0.032	0.026	-0.081	141.5	131.0	102.0	111.0	119.3	110.4	0.89	0.83	0.92	0.94	0.92	0.92	0.885980	1.000000	-
Rv3470c	ilvB2	16	118.4	90.3	114.5	95.0	103.4	126.6	0.127	-0.247	0.080	-0.176	-0.061	0.220	129.2	103.2	122.2	103.7	106.7	139.7	0.92	0.88	0.94	0.92	0.97	0.91	0.720172	1.000000	-
Rv3471c	-	6	131.1	134.4	135.4	123.0	143.0	131.6	-0.021	0.014	0.024	-0.109	0.100	-0.016	157.3	134.4	147.7	147.6	143.0	131.6	0.83	1.00	0.92	0.83	1.00	1.00	0.635267	1.000000	-
Rv3472	-	11	169.9	148.8	181.5	195.0	184.8	181.9	-0.058	-0.243	0.035	0.137	0.061	0.039	175.2	148.8	181.5	214.5	184.8	181.9	0.97	1.00	1.00	0.91	1.00	1.00	0.397152	1.000000	-
Rv3473c	bpoA	8	161.5	189.1	156.5	143.1	162.7	184.9	-0.041	0.180	-0.085	-0.210	-0.031	0.149	161.5	189.1	166.9	143.1	186.0	184.9	1.00	1.00	0.94	1.00	0.88	1.00	0.205806	1.000000	-
Rv3474	-	4	194.7	213.0	195.3	243.7	247.9	167.9	-0.109	0.017	-0.105	0.207	0.232	-0.317	212.4	213.0	195.3	243.7	247.9	167.9	0.92	1.00	1.00	1.00	1.00	1.00	0.864434	1.000000	-
Rv3475	-	24	263.3	281.9	293.3	287.5	265.3	276.3	-0.077	0.020	0.076	0.048	-0.066	-0.008	344.7	330.0	380.5	350.8	296.2	308.4	0.76	0.85	0.77	0.82	0.90	0.90	0.896729	1.000000	-
Rv3476c	kgtP	35	89.2	88.6	96.3	89.8	83.2	96.6	-0.021	-0.031	0.083	-0.013	-0.116	0.088	97.6	92.5	107.0	98.2	89.6	104.1	0.91	0.96	0.90	0.91	0.93	0.93	0.970716	1.000000	-
Rv3477	PE31	5	63.6	74.6	37.5	39.6	28.0	58.3	0.311	0.527	-0.378	-0.310	-0.745	0.196	63.6	74.6	41.7	39.6	28.0	58.3	1.00	1.00	0.90	1.00	1.00	1.00	0.000718	0.014771	-
Rv3478	PPE60	14	42.5	32.8	31.9	18.1	16.6	29.4	0.502	0.174	0.136	-0.541	-0.633	0.036	85.0	65.7	68.6	42.1	42.3	45.7	0.50	0.50	0.46	0.43	0.39	0.64	0.178824	1.000000	-
Rv3479	-	33	127.2	100.3	116.0	110.9	114.8	116.0	0.150	-0.179	0.021	-0.041	0.008	0.021	157.4	116.1	144.4	129.1	135.3	139.2	0.81	0.86	0.80	0.86	0.85	0.83	0.933683	1.000000	-
Rv3480c	-	28	91.2	112.5	113.2	116.6	122.5	109.7	-0.269	0.019	0.028	0.068	0.137	-0.015	107.9	123.5	140.9	132.3	134.5	118.2	0.85	0.91	0.80	0.88	0.91	0.93	0.652640	1.000000	-
Rv3481c	-	8	131.6	126.0	118.0	141.5	118.2	125.2	0.052	-0.008	-0.099	0.153	-0.097	-0.017	131.6	134.4	125.9	141.5	126.1	125.2	1.00	0.94	0.94	1.00	0.94	1.00	0.853880	1.000000	-
Rv3482c	-	10	125.4	120.6	90.0	121.8	128.4	140.1	0.049	-0.005	-0.408	0.008	0.082	0.203	144.7	134.0	100.0	135.3	151.1	155.6	0.87	0.90	0.90	0.90	0.85	0.90	0.860293	1.000000	-
Rv3483c	-	9	496.9	432.8	452.3	467.8	450.1	450.4	0.115	-0.082	-0.019	0.029	-0.026	-0.025	496.9	432.8	452.3	467.8	450.1	450.4	1.00	1.00	1.00	1.00	1.00	1.00	0.984725	1.000000	-
Rv3484	cpsA	27	172.6	177.0	162.4	186.1	190.6	176.4	-0.040	-0.004	-0.125	0.067	0.100	-0.009	183.9	183.8	178.9	218.5	201.9	190.5	0.94	0.96	0.91	0.85	0.94	0.93	0.427527	1.000000	-
Rv3485c	-	10	162.3	212.7	212.8	190.9	213.9	217.5	-0.305	0.075	0.076	-0.077	0.083	0.107	167.9	236.3	236.5	197.5	225.1	217.5	0.97	0.90	0.90	0.97	0.95	1.00	0.681790	1.000000	-
Rv3486	-	6	123.6	119.9	87.9	122.0	120.6	116.2	0.099	0.058	-0.369	0.081	0.065	0.014	130.8	119.9	105.5	129.2	120.6	116.2	0.94	1.00	0.83	0.94	1.00	1.00	0.845577	1.000000	-
Rv3487c	lipF	13	389.5	419.0	413.9	422.1	421.8	421.2	-0.089	0.015	-0.002	0.026	0.025	0.022	389.5	419.0	413.9	433.2	421.8	421.2	1.00	1.00	1.00	0.97	1.00	1.00	0.931200	1.000000	-
Rv3488	-	4	208.6	154.2	223.4	144.0	141.6	116.2	0.332	-0.092	0.429	-0.188	-0.210	-0.485	250.3	205.6	255.3	144.0	141.6	155.0	0.83	0.75	0.88	1.00	1.00	0.75	0.749238	1.000000	-
Rv3489	-	2	40.3	56.1	32.7	23.5	27.1	44.9	0.094	0.526	-0.171	-0.572	-0.403	0.233	48.3	56.1	43.6	23.5	27.1	44.9	0.83	1.00	0.75	1.00	1.00	1.00	0.292693	1.000000	-
Rv3490	otsA	29	61.7	93.8	38.6	78.0	76.7	86.0	-0.215	0.352	-0.830	0.099	0.076	0.232	70.7	99.0	52.0	85.9	82.3	92.3	0.87	0.95	0.74	0.91	0.93	0.93	0.000005	0.000160	-
Rv3491	-	9	248.9	265.7	212.7	299.1	296.5	258.7	-0.081	0.011	-0.303	0.179	0.167	-0.027	280.1	281.4	273.5	310.6	333.6	332.7	0.89	0.94	0.78	0.96	0.89	0.78	0.695285	1.000000	-
Rv3492c	-	9	116.3	115.9	96.9	195.5	203.0	114.6	-0.261	-0.266	-0.513	0.464	0.517	-0.281	130.8	122.7	109.0	195.5	203.0	114.6	0.89	0.94	0.89	1.00	1.00	1.00	0.031442	0.339060	-
Rv3493c	-	9	55.6	67.4	48.7	124.9	82.1	64.7	-0.381	-0.124	-0.555	0.720	0.143	-0.179	71.5	86.6	62.6	146.6	105.6	77.6	0.78	0.78	0.78	0.85	0.78	0.83	0.007219	0.106684	-
Rv3494c	mce4F	23	200.9	224.9	188.1	365.7	374.7	234.0	-0.389	-0.231	-0.482	0.459	0.494	-0.175	271.9	258.6	233.8	394.3	430.9	250.3	0.74	0.87	0.80	0.93	0.87	0.93	0.001509	0.028578	-
Rv3495c	lprN	10	70.1	109.2	75.2	175.4	207.0	113.8	-0.793	-0.188	-0.698	0.471	0.704	-0.131	75.1	115.0	88.5	175.4	207.0	126.4	0.93	0.95	0.85	1.00	1.00	0.90	0.000092	0.002346	-
Rv3496c	mce4D	25	141.5	201.0	166.1	330.7	328.2	178.8	-0.647	-0.155	-0.423	0.550	0.539	-0.319	158.4	233.8	197.7	393.7	341.9	207.9	0.89	0.86	0.84	0.84	0.96	0.86	0.000000	0.000000	-
Rv3497c	mce4C	13	91.1	121.3	94.0	216.1	233.4	130.5	-0.668	-0.274	-0.626	0.534	0.642	-0.173	96.1	126.1	106.2	216.1	233.4	141.4	0.95	0.96	0.88	1.00	1.00	0.92	0.000005	0.000174	-
Rv3498c	mce4B	11	97.7	150.9	138.9	297.6	235.5	159.0	-0.848	-0.246	-0.362	0.710	0.379	-0.173	129.0	184.4	179.7	297.6	259.0	194.3	0.76	0.82	0.77	1.00	0.91	0.82	0.035311	0.369793	-
Rv3499c	mce4A	31	105.8	176.7	128.4	248.6	246.5	141.2	-0.697	0.018	-0.429	0.498	0.486	-0.296	121.4	176.7	137.2	254.1	250.5	143.6	0.87	1.00	0.94	0.98	0.98	0.98	0.000000	0.000000	-
Rv3500c	yrbE4B	18	79.2	105.6	84.4	163.0	175.3	105.9	-0.558	-0.164	-0.471	0.439	0.541	-0.160	104.3	126.7	104.8	172.5	185.6	112.1	0.76	0.83	0.81	0.94	0.94	0.94	0.011848	0.157584	-
Rv3501c	yrbE4A	7	91.1	107.0	87.9	207.7	196.8	100.7	-0.510	-0.290	-0.559	0.636	0.560	-0.373	91.1	107.0	102.6	207.7	196.8	100.7	1.00	1.00	0.86	1.00	1.00	1.00	0.021656	0.252648	-
Rv3502c	fabG	10	287.7	186.7	272.7	360.0	319.2	137.0	0.141	-0.470	0.064	0.459	0.288	-0.903	332.0	196.5	272.7	400.0	354.6	152.2	0.87	0.95	1.00	0.90	0.90	0.90	0.024058	0.271933	-
Rv3503c	fdxD	2	17.9	10.2	14.0	18.7	25.7	27.3	-0.066	-0.658	-0.332	-0.016	0.357	0.430	21.5	20.4	18.7	37.4	25.7	27.3	0.83	0.50	0.75	0.50	1.00	1.00	0.137534	0.905545	-
Rv3504	fadE26	18	157.9	165.6	154.3	156.4	159.7	167.4	-0.020	0.046	-0.052	-0.034	-0.005	0.061	177.7	186.3	205.8	191.9	159.7	177.2	0.89	0.89	0.75	0.81	1.00	0.94	0.105741	0.762938	-
Rv3505	fadE27	12	123.9	103.4	140.9	103.1	121.4	125.0	0.049	-0.202	0.228	-0.205	0.020	0.060	165.2	130.6	187.9	148.5	153.3	157.8	0.75	0.79	0.75	0.69	0.79	0.79	0.986902	1.000000	-
Rv3506	fadD17	23	172.5	159.3	178.7	139.6	139.7	158.9	0.122	0.010	0.171	-0.174	-0.173	0.007	192.0	183.2	200.5	160.6	153.0	174.1	0.90	0.87	0.89	0.87	0.91	0.91	0.981048	1.000000	-
Rv3507	PE_PGRS53	37	164.2	160.5	169.8	147.6	149.9	125.1	0.100	0.068	0.147	-0.049	-0.028	-0.279	212.0	215.9	224.4	188.3	178.9	171.4	0.77	0.74	0.76	0.78	0.84	0.73	0.827170	1.000000	-
Rv3508	PE_PGRS54	28	102.4	88.4	123.1	104.9	117.9	102.8	-0.055	-0.257	0.199	-0.021	0.139	-0.050	134.4	103.1	140.7	120.8	134.7	115.1	0.76	0.86	0.88	0.87	0.88	0.89	0.709489	1.000000	-
Rv3509c	ilvX	21	307.8	309.3	324.1	286.6	295.8	299.5	0.018	0.025	0.092	-0.083	-0.038	-0.021	352.6	316.9	324.1	291.2	295.8	314.5	0.87	0.98	1.00	0.98	1.00	0.95	0.111455	0.785054	-
Rv3510c	-	15	130.1	135.8	138.0	136.6	115.0	149.4	-0.043	0.017	0.039	0.025	-0.214	0.150	150.2	150.9	159.3	153.7	132.7	154.6	0.87	0.90	0.87	0.89	0.87	0.97	0.981547	1.000000	-
Rv3511	PE_PGRS55	23	374.5	322.0	387.1	348.9	306.2	308.7	0.132	-0.082	0.179	0.032	-0.154	-0.143	403.8	329.2	434.3	370.4	335.3	315.5	0.93	0.98	0.89	0.94	0.91	0.98	0.791028	1.000000	-
Rv3512	PE_PGRS56	26	171.2	139.7	160.0	153.7	143.0	132.2	0.185	-0.099	0.090	0.035	-0.066	-0.176	196.3	191.1	184.8	173.7	177.0	167.6	0.87	0.73	0.87	0.88	0.81	0.79	0.368780	1.000000	-
Rv3513c	fadD18	13	369.5	330.7	312.0	349.8	354.9	362.2	0.091	-0.066	-0.149	0.013	0.034	0.063	369.5	330.7	324.5	349.8	354.9	362.2	1.00	1.00	0.96	1.00	1.00	1.00	0.978831	1.000000	-
Rv3514	PE_PGRS57	25	166.7	131.6	171.9	164.5	157.6	131.7	0.111	-0.219	0.154	0.092	0.032	-0.218	235.8	173.1	226.2	212.7	167.7	156.8	0.71	0.76	0.76	0.77	0.94	0.84	0.209159	1.000000	-
Rv3515c	fadD19	27	126.7	125.7	124.3	133.9	133.6	138.8	-0.041	-0.052	-0.068	0.035	0.033	0.086	153.2	138.5	142.8	148.5	147.3	149.9	0.83	0.91	0.87	0.90	0.91	0.93	0.978765	1.000000	-
Rv3516	echA19	7	52.9	77.7	87.2	62.3	68.2	63.7	-0.346	0.167	0.324	-0.131	-0.009	-0.101	61.8	77.7	93.9	72.6	68.2	74.3	0.86	1.00	0.93	0.86	1.00	0.86	0.406830	1.000000	-
Rv3517	-	15	218.1	159.3	222.2	199.5	192.8	163.3	0.176	-0.266	0.202	0.050	0.002	-0.231	306.7	191.1	317.5	320.6	214.2	188.4	0.71	0.83	0.70	0.62	0.90	0.87	0.156010	0.966885	-
Rv3518c	cyp142	12	82.5	65.5	85.5	86.2	72.2	84.3	0.053	-0.260	0.102	0.113	-0.129	0.082	135.0	104.7	120.8	129.3	108.2	126.5	0.61	0.62	0.71	0.67	0.67	0.67	0.999162	1.000000	-
Rv3519	-	10	186.5	180.7	204.3	205.9	208.6	218.7	-0.104	-0.148	0.024	0.036	0.054	0.120	186.5	190.2	215.1	205.9	208.6	243.0	1.00	0.95	0.95	1.00	1.00	0.90	0.307149	1.000000	-
Rv3520c	-	14	296.7	272.4	264.9	287.6	325.2	294.0	0.032	-0.089	-0.129	-0.012	0.162	0.019	296.7	272.4	264.9	287.6	325.2	294.0	1.00	1.00	1.00	1.00	1.00	1.00	0.917537	1.000000	-
Rv3521	-	12	247.8	241.9	261.6	252.6	249.0	205.7	0.027	-0.007	0.104	0.054	0.034	-0.236	297.3	290.3	285.4	284.2	249.0	214.7	0.83	0.83	0.92	0.89	1.00	0.96	0.412371	1.000000	-
Rv3522	ltp4	17	163.4	152.9	168.0	158.6	147.1	120.4	0.104	0.010	0.143	0.062	-0.043	-0.322	208.3	157.5	219.7	172.1	178.6	132.0	0.78	0.97	0.76	0.92	0.82	0.91	0.153889	0.958115	-
Rv3523	ltp3	14	117.1	121.3	119.8	112.7	94.3	111.3	0.052	0.101	0.084	-0.001	-0.246	-0.018	132.9	125.8	139.8	124.6	101.6	115.5	0.88	0.96	0.86	0.90	0.93	0.96	0.951190	1.000000	-
Rv3524	-	16	142.3	135.1	142.4	135.0	131.3	147.6	0.034	-0.039	0.034	-0.040	-0.079	0.084	175.2	154.4	175.2	147.3	150.0	147.6	0.81	0.88	0.81	0.92	0.88	1.00	0.522832	1.000000	-
Rv3525c	-	8	208.6	173.3	188.8	222.1	229.6	249.9	-0.023	-0.284	-0.163	0.065	0.112	0.232	217.7	173.3	188.8	222.1	229.6	249.9	0.96	1.00	1.00	1.00	1.00	1.00	0.888897	1.000000	-
Rv3526	-	20	86.0	70.5	87.6	83.7	83.6	58.4	0.128	-0.142	0.153	0.090	0.089	-0.394	103.2	78.3	103.1	91.3	92.9	64.9	0.83	0.90	0.85	0.92	0.90	0.90	0.697267	1.000000	-
Rv3527	-	6	75.6	97.6	105.2	100.8	93.3	86.4	-0.285	0.064	0.167	0.108	0.002	-0.102	80.0	130.2	126.3	113.4	101.7	94.3	0.94	0.75	0.83	0.89	0.92	0.92	0.649405	1.000000	-
Rv3528c	-	33	4.8	8.0	10.1	9.5	9.9	7.0	-0.428	-0.024	0.195	0.133	0.169	-0.139	34.2	24.0	47.8	40.9	29.6	23.1	0.14	0.33	0.21	0.23	0.33	0.30	0.013564	0.176858	-
Rv3529c	-	25	58.9	44.0	54.2	49.4	53.8	49.6	0.173	-0.209	0.063	-0.058	0.054	-0.053	73.6	50.0	66.1	59.8	62.6	51.7	0.80	0.88	0.82	0.83	0.86	0.96	0.283016	1.000000	-
Rv3530c	-	16	58.7	54.6	59.0	73.9	61.0	63.9	-0.070	-0.166	-0.064	0.240	-0.018	0.044	93.9	97.0	85.8	110.9	93.0	75.8	0.62	0.56	0.69	0.67	0.66	0.84	0.534985	1.000000	-
Rv3531c	-	22	129.0	158.7	139.2	140.7	134.9	150.9	-0.136	0.153	-0.030	-0.015	-0.074	0.082	135.1	174.6	145.8	147.4	138.0	154.4	0.95	0.91	0.95	0.95	0.98	0.98	0.590849	1.000000	-
Rv3532	PPE61	17	245.8	238.3	228.1	226.1	221.4	237.6	0.077	0.032	-0.029	-0.042	-0.072	0.028	255.9	238.3	242.4	226.1	228.1	237.6	0.96	1.00	0.94	1.00	0.97	1.00	0.781482	1.000000	-
Rv3533c	PPE62	16	75.7	77.1	79.9	76.9	74.7	83.3	-0.040	-0.014	0.033	-0.019	-0.057	0.091	100.9	94.9	116.2	102.5	88.6	95.2	0.75	0.81	0.69	0.75	0.84	0.88	0.961882	1.000000	-
Rv3534c	-	7	190.6	204.6	202.6	187.7	211.5	190.0	-0.052	0.047	0.033	-0.074	0.094	-0.057	190.6	220.3	218.2	219.0	211.5	221.7	1.00	0.93	0.93	0.86	1.00	0.86	0.593425	1.000000	-
Rv3535c	-	10	226.6	282.9	244.1	223.4	303.7	247.6	-0.165	0.149	-0.060	-0.186	0.249	-0.040	251.8	314.3	244.1	248.2	319.7	275.1	0.90	0.90	1.00	0.90	0.95	0.90	0.397798	1.000000	-
Rv3536c	-	8	26.9	29.9	27.7	25.0	43.4	56.0	-0.318	-0.191	-0.286	-0.408	0.282	0.615	34.0	36.8	44.3	40.0	46.3	64.0	0.79	0.81	0.62	0.62	0.94	0.88	0.094966	0.720367	-
Rv3537	-	35	49.3	53.7	60.0	70.5	64.4	50.9	-0.218	-0.105	0.042	0.259	0.136	-0.176	80.9	91.7	100.0	100.1	88.4	72.7	0.61	0.59	0.60	0.70	0.73	0.70	0.573840	1.000000	-
Rv3538	-	12	35.8	33.5	34.4	42.8	38.3	32.6	-0.014	-0.101	-0.066	0.213	0.072	-0.133	61.4	50.2	55.0	59.2	51.1	43.5	0.58	0.67	0.62	0.72	0.75	0.75	0.976197	1.000000	-
Rv3539	PPE63	26	131.8	96.0	119.3	120.2	105.3	103.5	0.217	-0.220	0.079	0.089	-0.094	-0.117	149.0	108.5	137.9	128.4	114.1	119.6	0.88	0.88	0.87	0.94	0.92	0.87	0.712641	1.000000	-
Rv3540c	ltp2	15	55.5	12.5	61.5	15.3	23.8	13.0	0.778	-1.012	0.915	-0.794	-0.293	-0.969	69.3	23.4	76.8	30.0	29.7	24.4	0.80	0.53	0.80	0.51	0.80	0.53	0.000000	0.000000	-
Rv3541c	-	7	22.7	4.3	34.3	10.1	9.8	4.3	0.525	-1.050	1.029	-0.348	-0.380	-1.046	36.7	20.1	60.0	23.6	19.6	12.1	0.62	0.21	0.57	0.43	0.50	0.36	0.001201	0.023486	-
Rv3542c	-	11	86.0	15.2	77.3	24.4	35.9	16.8	0.935	-1.236	0.790	-0.694	-0.218	-1.130	94.6	22.3	89.5	26.9	41.6	21.7	0.91	0.68	0.86	0.91	0.86	0.77	0.000000	0.000000	-
Rv3543c	fadE29	15	29.1	5.7	32.7	13.8	10.3	1.4	0.733	-0.935	0.877	-0.124	-0.418	-1.680	37.4	21.5	57.6	27.0	22.2	14.0	0.78	0.27	0.57	0.51	0.47	0.10	0.000000	0.000000	-
Rv3544c	fadE28	16	103.3	19.6	98.0	39.0	41.5	16.2	0.902	-1.235	0.830	-0.396	-0.318	-1.451	110.2	24.2	108.2	43.6	47.4	23.6	0.94	0.81	0.91	0.90	0.88	0.69	0.000000	0.000000	-
Rv3545c	cyp125	19	98.9	111.6	121.5	109.0	108.5	96.1	-0.115	0.051	0.168	0.017	0.011	-0.156	120.0	136.8	149.0	121.8	124.9	110.6	0.82	0.82	0.82	0.89	0.87	0.87	0.955490	1.000000	-
Rv3546	fadA5	4	175.6	137.8	142.9	199.4	187.7	138.1	0.099	-0.240	-0.189	0.278	0.192	-0.237	175.6	137.8	142.9	199.4	187.7	138.1	1.00	1.00	1.00	1.00	1.00	1.00	0.671679	1.000000	-
Rv3547	-	12	226.2	235.5	224.5	215.1	218.4	255.4	-0.019	0.038	-0.029	-0.089	-0.068	0.153	226.2	235.5	234.3	215.1	218.4	255.4	1.00	1.00	0.96	1.00	1.00	1.00	0.815605	1.000000	-
Rv3548c	-	7	266.4	255.0	251.2	250.3	219.8	233.7	0.112	0.050	0.029	0.024	-0.159	-0.073	266.4	274.6	251.2	250.3	236.7	251.6	1.00	0.93	1.00	1.00	0.93	0.93	0.795566	1.000000	-
Rv3549c	-	10	127.2	86.6	127.1	70.9	83.0	52.7	0.458	-0.072	0.457	-0.342	-0.129	-0.739	131.6	86.6	141.2	78.8	87.4	58.5	0.97	1.00	0.90	0.90	0.95	0.90	0.180420	1.000000	-
Rv3550	echA20	5	69.9	35.7	74.6	53.0	59.7	30.8	0.345	-0.533	0.432	-0.024	0.135	-0.720	80.7	39.7	74.6	53.0	59.7	30.8	0.87	0.90	1.00	1.00	1.00	1.00	0.012697	0.166651	-
Rv3551	-	14	117.6	25.1	127.1	52.1	51.5	22.3	0.790	-1.238	0.897	-0.314	-0.328	-1.378	120.5	28.1	127.1	60.7	65.6	34.7	0.98	0.89	1.00	0.86	0.79	0.64	0.000000	0.000000	-
Rv3552	-	9	9.5	4.5	12.2	8.8	6.5	6.2	0.161	-0.442	0.407	0.089	-0.169	-0.207	25.6	16.3	21.9	23.7	16.8	12.4	0.37	0.28	0.56	0.37	0.39	0.50	0.124924	0.842014	-
Rv3553	-	7	145.9	104.1	138.2	94.9	94.7	75.2	0.407	-0.061	0.331	-0.189	-0.191	-0.505	204.3	132.5	193.5	110.7	110.5	105.3	0.71	0.79	0.71	0.86	0.86	0.71	0.304706	1.000000	-
Rv3554	fdxB	25	139.2	135.2	141.6	138.7	127.1	122.0	0.054	0.012	0.077	0.049	-0.073	-0.130	155.9	146.9	157.3	148.6	138.2	129.7	0.89	0.92	0.90	0.93	0.92	0.94	0.999471	1.000000	-
Rv3555c	-	12	140.9	101.9	131.9	124.1	118.7	82.4	0.262	-0.187	0.171	0.085	0.024	-0.477	158.5	128.7	166.7	159.5	142.4	109.9	0.89	0.79	0.79	0.78	0.83	0.75	0.822252	1.000000	-
Rv3556c	fadA6	12	85.5	71.5	99.4	77.6	83.0	74.7	0.058	-0.184	0.264	-0.075	0.018	-0.125	128.3	85.8	108.4	111.7	110.7	89.7	0.67	0.83	0.92	0.69	0.75	0.83	0.467522	1.000000	-
Rv3557c	-	15	159.8	179.0	170.6	153.7	162.8	135.7	-0.004	0.155	0.088	-0.059	0.022	-0.233	199.8	191.8	213.3	168.7	180.9	145.3	0.80	0.93	0.80	0.91	0.90	0.93	0.751987	1.000000	-
Rv3558	PPE64	14	84.2	83.8	83.1	113.1	92.4	101.2	-0.136	-0.142	-0.154	0.270	-0.008	0.116	147.3	123.5	129.2	163.9	152.2	128.8	0.57	0.68	0.64	0.69	0.61	0.79	0.913572	1.000000	-
Rv3559c	-	6	88.8	27.1	79.2	64.2	50.2	42.2	0.560	-0.988	0.405	0.122	-0.205	-0.431	99.9	46.4	86.4	77.1	50.2	50.6	0.89	0.58	0.92	0.83	1.00	0.83	0.095782	0.725178	-
Rv3560c	fadE30	13	140.7	96.5	121.2	132.1	125.9	106.5	0.216	-0.306	0.008	0.128	0.061	-0.170	156.8	104.6	121.2	139.2	125.9	106.5	0.90	0.92	1.00	0.95	1.00	1.00	0.183578	1.000000	-
Rv3561	fadD3	10	192.0	201.7	204.3	178.7	191.2	185.5	-0.002	0.067	0.086	-0.102	-0.008	-0.050	192.0	201.7	204.3	178.7	201.2	185.5	1.00	1.00	1.00	1.00	0.95	1.00	0.892411	1.000000	-
Rv3562	fadE31	12	65.0	37.8	51.5	55.9	37.8	27.0	0.462	-0.249	0.153	0.260	-0.248	-0.669	83.6	47.7	103.0	77.4	64.8	40.5	0.78	0.79	0.50	0.72	0.58	0.67	0.031807	0.341155	-
Rv3563	fadE32	9	165.6	143.4	177.4	157.3	155.7	117.9	0.111	-0.090	0.208	0.040	0.026	-0.361	165.6	161.3	177.4	157.3	155.7	124.8	1.00	0.89	1.00	1.00	1.00	0.94	0.396048	1.000000	-
Rv3564	fadE33	10	210.1	163.1	241.9	176.7	191.0	115.1	0.194	-0.162	0.393	-0.049	0.060	-0.646	233.4	181.2	268.8	220.9	212.3	143.9	0.90	0.90	0.90	0.80	0.90	0.80	0.739227	1.000000	-
Rv3565	aspB	16	26.0	42.0	36.9	26.5	32.6	23.6	-0.225	0.373	0.209	-0.205	0.053	-0.343	46.3	79.0	56.3	52.9	61.4	34.3	0.56	0.53	0.66	0.50	0.53	0.69	0.059924	0.537294	-
Rv3566c	nat	12	100.4	68.8	76.4	87.5	93.0	95.7	0.197	-0.318	-0.175	0.008	0.092	0.131	139.0	86.9	131.0	121.1	117.5	109.3	0.72	0.79	0.58	0.72	0.79	0.88	0.797082	1.000000	-
Rv3566A	-	3	45.9	40.6	45.9	69.2	28.6	35.1	0.050	-0.109	0.048	0.593	-0.553	-0.296	68.9	61.0	91.8	69.2	42.8	52.6	0.67	0.67	0.50	1.00	0.67	0.67	0.408090	1.000000	-
Rv3567c	-	8	101.5	116.3	109.9	102.8	114.6	118.7	-0.118	0.069	-0.009	-0.101	0.049	0.097	105.9	132.9	135.3	117.5	131.0	135.6	0.96	0.88	0.81	0.88	0.88	0.88	0.764121	1.000000	-
Rv3568c	bphC	12	57.5	49.1	53.0	86.4	73.7	31.8	-0.025	-0.233	-0.133	0.524	0.308	-0.790	76.6	56.1	70.6	107.3	93.1	40.1	0.75	0.88	0.75	0.81	0.79	0.79	0.040219	0.409372	-
Rv3569c	bphD	13	100.2	61.4	81.3	62.1	81.7	58.9	0.408	-0.255	0.123	-0.240	0.129	-0.311	111.7	66.5	91.9	73.4	106.2	61.2	0.90	0.92	0.88	0.85	0.77	0.96	0.009834	0.137792	-
Rv3570c	-	16	66.2	60.4	85.1	100.6	113.6	66.9	-0.291	-0.413	0.049	0.277	0.445	-0.278	75.7	62.4	123.8	130.4	125.3	71.3	0.88	0.97	0.69	0.77	0.91	0.94	0.000003	0.000109	-
Rv3571	hmp	11	159.7	159.7	208.5	162.7	166.7	98.4	0.003	0.004	0.378	0.030	0.063	-0.667	164.7	175.7	218.5	173.2	166.7	98.4	0.97	0.91	0.95	0.94	1.00	1.00	0.071098	0.604860	-
Rv3572	-	7	148.4	182.0	141.2	158.7	202.5	147.6	-0.134	0.151	-0.204	-0.041	0.301	-0.142	148.4	182.0	152.0	158.7	202.5	147.6	1.00	1.00	0.93	1.00	1.00	1.00	0.704764	1.000000	-
Rv3573c	fadE34	20	148.6	157.8	164.6	153.0	149.0	141.3	-0.035	0.049	0.108	0.006	-0.032	-0.106	162.1	175.4	193.6	170.0	170.2	148.7	0.92	0.90	0.85	0.90	0.88	0.95	0.967748	1.000000	-
Rv3574	-	12	175.1	150.2	169.9	103.2	100.3	151.3	0.296	0.081	0.254	-0.439	-0.478	0.092	210.1	156.7	185.4	109.3	104.7	165.1	0.83	0.96	0.92	0.94	0.96	0.92	0.061292	0.545886	-
Rv3575c	-	16	106.4	117.5	107.8	146.7	142.5	140.4	-0.243	-0.107	-0.225	0.202	0.162	0.141	124.6	117.5	111.3	156.4	152.0	144.9	0.85	1.00	0.97	0.94	0.94	0.97	0.150455	0.945649	-
Rv3576	lppH	10	121.7	102.9	124.3	132.5	111.8	87.0	0.098	-0.134	0.128	0.216	-0.019	-0.364	152.1	128.6	146.3	165.6	139.7	133.8	0.80	0.80	0.85	0.80	0.80	0.65	0.902471	1.000000	-
Rv3577	-	13	110.7	104.7	109.2	127.0	95.9	135.2	-0.038	-0.115	-0.057	0.152	-0.236	0.239	119.9	118.4	129.0	130.4	108.4	159.8	0.92	0.88	0.85	0.97	0.88	0.85	0.543528	1.000000	-
Rv3578	arsB2	14	349.7	252.3	278.6	285.7	274.8	278.8	0.282	-0.181	-0.040	-0.005	-0.060	-0.039	367.2	252.3	278.6	285.7	274.8	278.8	0.95	1.00	1.00	1.00	1.00	1.00	0.457542	1.000000	-
Rv3579c	-	10	0.5	2.5	1.9	5.1	2.2	2.6	-0.429	0.009	-0.116	0.439	-0.059	0.018	16.4	12.6	18.9	22.0	21.7	25.7	0.03	0.20	0.10	0.23	0.10	0.10	0.223797	1.000000	-
Rv3580c	cysS	26	0.0	0.0	0.2	0.0	0.0	0.0	-0.012	-0.012	0.057	-0.012	-0.012	-0.012	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.02	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3581c	ispF	4	0.0	2.5	0.0	1.1	0.0	0.0	-0.165	0.430	-0.165	0.118	-0.165	-0.165	0.0	10.2	0.0	13.0	0.0	0.0	0.00	0.25	0.00	0.08	0.00	0.00	0.363281	1.000000	-
Rv3582c	ispD	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3583c	-	7	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3584	lpqE	5	160.6	207.0	150.7	159.1	148.4	179.3	-0.059	0.297	-0.148	-0.072	-0.169	0.095	160.6	207.0	150.7	159.1	148.4	179.3	1.00	1.00	1.00	1.00	1.00	1.00	0.920731	1.000000	-
Rv3585	radA	18	285.7	274.5	293.2	272.5	292.9	266.7	0.024	-0.033	0.061	-0.043	0.059	-0.074	328.3	299.4	340.5	327.0	301.3	300.0	0.87	0.92	0.86	0.83	0.97	0.89	0.896421	1.000000	-
Rv3586	-	13	50.9	52.4	40.4	51.7	50.3	54.6	0.023	0.061	-0.279	0.042	0.007	0.114	60.2	68.2	52.5	61.1	62.3	78.8	0.85	0.77	0.77	0.85	0.81	0.69	0.354157	1.000000	-
Rv3587c	-	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3588c	-	7	0.6	0.0	1.8	2.1	0.6	0.0	-0.076	-0.227	0.217	0.281	-0.052	-0.227	11.6	0.0	25.2	44.3	9.0	0.0	0.05	0.00	0.07	0.05	0.07	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3589	mutY	14	168.6	170.7	183.0	179.8	184.7	140.7	-0.022	-0.004	0.093	0.068	0.106	-0.275	202.3	191.2	197.1	198.7	206.8	151.5	0.83	0.89	0.93	0.90	0.89	0.93	0.975437	1.000000	-
Rv3590c	PE_PGRS58	19	169.8	176.2	198.0	186.0	185.8	179.9	-0.103	-0.050	0.114	0.026	0.024	-0.021	201.6	181.0	221.3	200.0	196.1	213.7	0.84	0.97	0.89	0.93	0.95	0.84	0.529274	1.000000	-
Rv3591c	-	14	122.2	119.1	106.4	123.8	127.5	104.8	0.057	0.021	-0.135	0.075	0.116	-0.155	131.6	123.5	114.5	133.3	127.5	112.9	0.93	0.96	0.93	0.93	1.00	0.93	0.870895	1.000000	-
Rv3592	TB11.2	2	198.7	265.2	181.5	193.0	214.3	260.9	-0.137	0.271	-0.264	-0.178	-0.030	0.248	198.7	265.2	181.5	193.0	214.3	260.9	1.00	1.00	1.00	1.00	1.00	1.00	0.620076	1.000000	-
Rv3593	lpqF	16	42.9	86.6	45.4	65.1	101.9	78.3	-0.648	0.287	-0.573	-0.097	0.510	0.150	52.8	98.9	55.9	69.5	108.7	86.4	0.81	0.88	0.81	0.94	0.94	0.91	0.000018	0.000536	-
Rv3594	-	14	236.4	253.6	256.6	250.0	244.4	274.1	-0.093	0.006	0.022	-0.014	-0.046	0.116	254.6	273.2	276.3	269.2	263.2	284.3	0.93	0.93	0.93	0.93	0.93	0.96	0.998782	1.000000	-
Rv3595c	PE_PGRS59	15	173.8	202.0	179.8	191.8	176.7	184.8	-0.087	0.125	-0.039	0.052	-0.063	0.000	200.5	233.1	199.8	191.8	196.3	198.0	0.87	0.87	0.90	1.00	0.90	0.93	0.322911	1.000000	-
Rv3596c	clpC1	25	0.0	0.2	0.0	0.0	0.0	0.0	-0.010	0.049	-0.010	-0.010	-0.010	-0.010	0.0	10.4	0.0	0.0	0.0	0.0	0.00	0.02	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3597c	lsr2	3	2.5	5.0	0.0	9.6	7.3	7.0	-0.445	-0.025	-1.032	0.510	0.260	0.229	22.6	15.1	0.0	17.2	14.5	14.0	0.11	0.33	0.00	0.56	0.50	0.50	0.366930	1.000000	-
Rv3598c	lysS	30	0.0	0.2	0.0	0.0	0.0	0.0	-0.008	0.039	-0.008	-0.008	-0.008	-0.008	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.02	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3599c	-	1	0.0	0.0	37.8	0.0	0.0	0.0	-1.177	-1.177	1.922	-1.177	-1.177	-1.177	0.0	0.0	75.7	0.0	0.0	0.0	0.00	0.00	0.50	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3600c	-	12	209.3	238.2	208.9	213.1	214.7	237.1	-0.072	0.111	-0.075	-0.046	-0.036	0.104	259.8	259.9	238.7	232.5	234.2	284.6	0.81	0.92	0.88	0.92	0.92	0.83	0.958667	1.000000	-
Rv3601c	panD	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3602c	panC	11	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3603c	-	12	182.5	191.9	155.7	175.5	197.7	186.9	0.006	0.077	-0.216	-0.049	0.118	0.040	199.1	200.3	186.9	175.5	197.7	186.9	0.92	0.96	0.83	1.00	1.00	1.00	0.258511	1.000000	-
Rv3604c	-	13	121.3	189.1	124.1	86.4	133.6	123.2	-0.092	0.528	-0.060	-0.558	0.042	-0.071	143.3	196.7	134.4	96.3	144.7	133.4	0.85	0.96	0.92	0.90	0.92	0.92	0.121382	0.827889	-
Rv3605c	-	6	247.9	181.1	209.5	219.7	249.9	241.3	0.138	-0.305	-0.100	-0.033	0.149	0.099	247.9	181.1	209.5	219.7	249.9	241.3	1.00	1.00	1.00	1.00	1.00	1.00	0.907721	1.000000	-
Rv3606c	folK	6	42.6	46.0	42.8	35.6	48.4	43.8	-0.019	0.082	-0.012	-0.247	0.148	0.017	127.8	138.1	128.5	106.9	145.3	131.4	0.33	0.33	0.33	0.33	0.33	0.33	0.991521	1.000000	-
Rv3607c	folB	6	3.7	5.1	3.6	1.5	4.4	1.7	0.064	0.276	0.050	-0.350	0.167	-0.320	22.3	20.4	21.8	13.9	17.5	10.1	0.17	0.25	0.17	0.11	0.25	0.17	0.816221	1.000000	-
Rv3608c	folP1	7	0.0	0.0	0.9	0.0	0.0	0.0	-0.043	-0.043	0.196	-0.043	-0.043	-0.043	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.07	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3609c	folE	12	0.0	0.4	0.0	0.0	0.0	0.0	-0.020	0.096	-0.020	-0.020	-0.020	-0.020	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.04	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3610c	ftsH	28	104.9	93.7	101.7	96.2	113.8	95.9	0.052	-0.103	0.009	-0.068	0.164	-0.071	137.6	107.1	135.5	115.4	151.7	105.3	0.76	0.88	0.75	0.83	0.75	0.91	0.220546	1.000000	-
Rv3611	-	1	80.5	147.7	81.4	110.6	182.3	177.0	-0.658	0.179	-0.642	-0.223	0.473	0.431	80.5	147.7	81.4	110.6	182.3	177.0	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3612c	-	4	142.2	229.4	119.2	132.0	192.7	211.1	-0.259	0.413	-0.504	-0.363	0.167	0.296	142.2	229.4	119.2	132.0	192.7	211.1	1.00	1.00	1.00	1.00	1.00	1.00	0.001803	0.033467	-
Rv3613c	-	0	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3614c	-	8	170.8	198.8	172.0	148.9	158.7	200.7	-0.034	0.179	-0.024	-0.226	-0.137	0.193	215.7	198.8	196.6	155.4	169.3	229.4	0.79	1.00	0.88	0.96	0.94	0.88	0.526040	1.000000	-
Rv3615c	-	10	153.4	164.0	135.8	147.2	138.1	141.4	0.063	0.157	-0.108	0.005	-0.083	-0.051	184.1	193.0	193.9	191.9	153.5	148.8	0.83	0.85	0.70	0.77	0.90	0.95	0.825306	1.000000	-
Rv3616c	-	16	197.9	184.6	201.5	175.6	179.3	148.8	0.123	0.025	0.149	-0.045	-0.015	-0.277	306.4	246.1	307.0	247.9	212.5	176.3	0.65	0.75	0.66	0.71	0.84	0.84	0.701100	1.000000	-
Rv3617	ephA	16	251.7	276.2	258.2	279.3	293.8	290.0	-0.125	0.007	-0.089	0.023	0.095	0.076	262.7	294.6	266.5	297.9	293.8	290.0	0.96	0.94	0.97	0.94	1.00	1.00	0.635668	1.000000	-
Rv3618	-	22	115.2	165.4	134.2	131.9	152.4	151.3	-0.288	0.216	-0.076	-0.100	0.101	0.091	133.3	173.3	151.4	155.4	159.7	154.8	0.86	0.95	0.89	0.85	0.95	0.98	0.214732	1.000000	-
Rv3619c	esxV	3	329.0	345.9	300.5	307.2	353.8	404.9	-0.048	0.024	-0.176	-0.145	0.056	0.248	329.0	345.9	300.5	307.2	353.8	404.9	1.00	1.00	1.00	1.00	1.00	1.00	0.853142	1.000000	-
Rv3620c	esxW	3	217.3	209.2	230.2	207.3	241.3	221.0	-0.024	-0.078	0.057	-0.091	0.124	-0.000	217.3	209.2	230.2	207.3	241.3	221.0	1.00	1.00	1.00	1.00	1.00	1.00	0.994602	1.000000	-
Rv3621c	PPE65	11	277.8	241.9	261.5	247.3	248.4	266.1	0.109	-0.086	0.024	-0.055	-0.049	0.048	295.7	241.9	302.8	281.4	248.4	266.1	0.94	1.00	0.86	0.88	1.00	1.00	0.437017	1.000000	-
Rv3622c	PE32	4	127.5	156.3	204.7	164.4	170.6	157.4	-0.347	-0.063	0.316	0.008	0.060	-0.053	127.5	156.3	204.7	164.4	170.6	157.4	1.00	1.00	1.00	1.00	1.00	1.00	0.901804	1.000000	-
Rv3623	lpqG	6	224.7	204.2	187.2	200.4	211.8	213.0	0.116	-0.018	-0.140	-0.045	0.033	0.041	252.8	245.0	187.2	240.5	231.1	255.6	0.89	0.83	1.00	0.83	0.92	0.83	0.791858	1.000000	-
Rv3624c	hpt	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3625c	mesJ	7	0.0	1.5	0.0	0.0	0.0	0.7	-0.099	0.270	-0.099	-0.099	-0.099	0.083	0.0	10.2	0.0	0.0	0.0	9.4	0.00	0.14	0.00	0.00	0.00	0.07	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3626c	-	11	54.3	53.7	44.7	48.5	54.8	68.3	0.005	-0.009	-0.248	-0.142	0.018	0.312	81.4	69.5	61.5	61.6	63.4	79.1	0.67	0.77	0.73	0.79	0.86	0.86	0.906654	1.000000	-
Rv3627c	-	13	27.2	63.8	32.9	36.7	63.1	31.0	-0.559	0.535	-0.323	-0.186	0.521	-0.398	48.3	79.0	57.1	53.0	71.3	47.4	0.56	0.81	0.58	0.69	0.88	0.65	0.074314	0.623469	-
Rv3628	ppa	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3629c	-	16	256.0	259.5	240.1	255.2	238.3	262.9	0.022	0.041	-0.068	0.018	-0.079	0.060	267.1	267.8	240.1	272.2	254.1	271.4	0.96	0.97	1.00	0.94	0.94	0.97	0.854665	1.000000	-
Rv3630	-	22	149.4	136.8	138.9	152.8	200.4	110.5	0.012	-0.111	-0.090	0.043	0.423	-0.407	159.1	146.8	149.1	155.1	200.4	110.5	0.94	0.93	0.93	0.98	1.00	1.00	0.046430	0.455175	-
Rv3631	-	5	39.0	41.6	30.6	30.3	32.7	49.6	0.059	0.139	-0.248	-0.262	-0.167	0.368	65.1	52.0	76.5	37.9	40.8	70.8	0.60	0.80	0.40	0.80	0.80	0.70	0.485200	1.000000	-
Rv3632	-	7	464.5	499.3	435.4	497.7	491.7	479.4	-0.041	0.062	-0.133	0.058	0.040	0.004	464.5	499.3	435.4	497.7	491.7	479.4	1.00	1.00	1.00	1.00	1.00	1.00	0.998302	1.000000	-
Rv3633	-	17	173.8	122.2	139.3	156.5	134.0	139.4	0.261	-0.230	-0.048	0.114	-0.102	-0.047	188.6	129.9	169.2	162.8	142.3	148.1	0.92	0.94	0.82	0.96	0.94	0.94	0.783009	1.000000	-
Rv3634c	galE1	18	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3635	-	24	23.7	35.4	22.7	15.8	34.1	20.2	-0.080	0.414	-0.130	-0.541	0.366	-0.266	35.5	47.1	41.9	27.1	40.9	28.5	0.67	0.75	0.54	0.58	0.83	0.71	0.000146	0.003596	-
Rv3636	-	5	117.2	126.2	128.8	116.7	96.2	122.2	-0.008	0.094	0.123	-0.014	-0.281	0.050	125.6	126.2	128.8	116.7	106.9	122.2	0.93	1.00	1.00	1.00	0.90	1.00	0.917541	1.000000	-
Rv3637	-	5	78.8	69.5	109.7	81.7	107.9	104.1	-0.210	-0.380	0.242	-0.160	0.220	0.170	98.5	86.8	156.7	102.2	134.9	130.1	0.80	0.80	0.70	0.80	0.80	0.80	0.927277	1.000000	-
Rv3638	-	12	75.5	86.4	101.6	85.7	90.1	97.5	-0.231	-0.047	0.175	-0.058	0.009	0.117	97.0	98.8	121.9	99.6	108.1	129.9	0.78	0.88	0.83	0.86	0.83	0.75	0.805378	1.000000	-
Rv3639c	-	9	141.0	92.5	167.1	139.4	107.5	119.5	0.136	-0.446	0.374	0.120	-0.240	-0.093	165.5	138.7	187.9	156.8	129.0	134.5	0.85	0.67	0.89	0.89	0.83	0.89	0.809821	1.000000	-
Rv3640c	-	13	161.2	142.9	162.9	156.8	152.6	143.7	0.070	-0.099	0.085	0.031	-0.007	-0.091	165.5	142.9	162.9	156.8	152.6	149.4	0.97	1.00	1.00	1.00	1.00	0.96	0.928325	1.000000	-
Rv3641c	fic	9	179.6	173.7	164.8	160.0	180.7	185.1	0.044	-0.002	-0.076	-0.117	0.053	0.087	179.6	173.7	164.8	160.0	180.7	185.1	1.00	1.00	1.00	1.00	1.00	1.00	0.961952	1.000000	-
Rv3642c	-	2	127.1	84.2	118.7	113.9	77.2	125.9	0.228	-0.339	0.133	0.075	-0.457	0.215	127.1	84.2	118.7	113.9	77.2	125.9	1.00	1.00	1.00	1.00	1.00	1.00	0.911481	1.000000	-
Rv3643	-	6	52.1	61.9	64.6	72.4	80.7	61.6	-0.306	-0.077	-0.019	0.133	0.281	-0.082	104.1	82.5	96.9	108.6	96.9	74.0	0.50	0.75	0.67	0.67	0.83	0.83	0.862262	1.000000	-
Rv3644c	-	14	0.5	0.0	0.0	0.0	0.3	0.0	0.107	-0.041	-0.041	-0.041	0.049	-0.041	22.6	0.0	0.0	0.0	9.0	0.0	0.02	0.00	0.00	0.00	0.04	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3645	-	20	77.5	34.4	114.3	3.5	5.2	17.8	0.807	-0.259	1.340	-2.463	-2.202	-1.046	96.8	57.3	138.6	21.3	23.3	44.6	0.80	0.60	0.82	0.17	0.23	0.40	0.000000	0.000000	-
Rv3646c	topA	48	1.1	1.9	0.6	1.5	1.4	0.7	-0.026	0.155	-0.149	0.066	0.041	-0.109	52.0	91.1	28.1	71.2	65.9	35.8	0.02	0.02	0.02	0.02	0.02	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3647c	-	8	63.2	57.3	50.9	61.0	75.5	74.1	-0.009	-0.141	-0.297	-0.057	0.229	0.204	108.4	83.3	135.7	97.6	100.6	91.2	0.58	0.69	0.38	0.62	0.75	0.81	0.664907	1.000000	-
Rv3648c	cspA	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3649	-	31	113.7	118.9	105.8	125.3	102.4	91.8	0.050	0.112	-0.049	0.184	-0.094	-0.244	148.9	150.5	128.7	164.1	129.6	132.4	0.76	0.79	0.82	0.76	0.79	0.69	0.565403	1.000000	-
Rv3650	PE33	3	74.8	79.2	48.9	79.9	35.5	46.8	0.277	0.355	-0.288	0.366	-0.702	-0.347	74.8	79.2	48.9	79.9	53.2	46.8	1.00	1.00	1.00	1.00	0.67	1.00	0.120453	0.823148	-
Rv3651	-	14	99.6	78.1	102.5	86.1	79.0	81.3	0.173	-0.158	0.213	-0.026	-0.143	-0.105	110.1	81.0	130.5	92.7	88.5	87.5	0.90	0.96	0.79	0.93	0.89	0.93	0.569582	1.000000	-
Rv3652	PE_PGRS60	5	370.7	365.5	333.4	374.0	288.9	308.6	0.122	0.102	-0.029	0.135	-0.232	-0.138	370.7	365.5	333.4	467.4	288.9	308.6	1.00	1.00	1.00	0.80	1.00	1.00	0.285286	1.000000	-
Rv3653	PE_PGRS61	5	131.9	154.6	178.9	118.3	165.2	166.7	-0.203	0.018	0.223	-0.354	0.111	0.123	164.9	193.2	198.8	147.8	165.2	185.2	0.80	0.80	0.90	0.80	1.00	0.90	0.787173	1.000000	-
Rv3654c	-	1	58.2	0.0	150.8	0.0	0.0	0.0	0.666	-2.994	1.968	-2.994	-2.994	-2.994	58.2	0.0	150.8	0.0	0.0	0.0	1.00	0.00	1.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3655c	-	5	118.1	106.2	117.6	114.8	105.2	126.4	0.040	-0.106	0.034	0.001	-0.119	0.135	147.6	106.2	130.6	132.5	131.6	126.4	0.80	1.00	0.90	0.87	0.80	1.00	0.796180	1.000000	-
Rv3656c	-	4	212.1	185.8	254.8	318.7	254.6	218.7	-0.179	-0.365	0.080	0.397	0.079	-0.136	254.5	247.8	254.8	347.7	339.5	291.6	0.83	0.75	1.00	0.92	0.75	0.75	0.629520	1.000000	-
Rv3657c	-	7	42.8	87.2	75.1	83.0	98.4	85.2	-0.806	0.140	-0.061	0.074	0.306	0.109	52.9	93.9	80.9	96.9	106.0	91.7	0.81	0.93	0.93	0.86	0.93	0.93	0.474036	1.000000	-
Rv3658c	-	8	123.3	183.0	119.9	164.1	214.2	161.7	-0.372	0.179	-0.410	0.026	0.401	0.006	140.9	244.0	137.1	196.9	228.5	199.0	0.88	0.75	0.88	0.83	0.94	0.81	0.276877	1.000000	-
Rv3659c	-	6	311.1	312.1	319.3	311.4	245.1	252.1	0.091	0.095	0.128	0.092	-0.247	-0.208	311.1	312.1	319.3	311.4	245.1	252.1	1.00	1.00	1.00	1.00	1.00	1.00	0.949611	1.000000	-
Rv3660c	-	7	39.8	45.2	46.0	46.0	36.6	63.4	-0.191	-0.027	-0.006	-0.005	-0.299	0.419	76.0	52.8	71.5	56.8	42.7	88.8	0.52	0.86	0.64	0.81	0.86	0.71	0.156666	0.967644	-
Rv3661	-	13	180.4	172.8	177.1	176.5	194.0	176.1	0.007	-0.053	-0.019	-0.024	0.109	-0.026	185.1	204.3	184.2	191.2	194.0	190.8	0.97	0.85	0.96	0.92	1.00	0.92	0.514066	1.000000	-
Rv3662c	-	3	190.9	137.5	212.1	14.1	40.9	128.0	0.642	0.182	0.790	-2.719	-1.453	0.083	190.9	137.5	212.1	15.8	40.9	128.0	1.00	1.00	1.00	0.89	1.00	1.00	0.000000	0.000000	-
Rv3663c	dppD	23	142.1	123.6	102.0	80.4	78.9	101.1	0.424	0.230	-0.036	-0.362	-0.386	-0.048	175.1	153.7	138.0	99.0	90.8	116.2	0.81	0.80	0.74	0.81	0.87	0.87	0.039235	0.402434	-
Rv3664c	dppC	14	117.5	113.3	97.5	78.1	67.7	111.0	0.256	0.207	0.000	-0.303	-0.495	0.178	140.9	113.3	124.1	80.0	86.2	124.3	0.83	1.00	0.79	0.98	0.79	0.89	0.004049	0.066218	-
Rv3665c	dppB	14	143.3	91.3	129.1	78.0	80.4	116.1	0.413	-0.209	0.268	-0.424	-0.384	0.121	154.3	98.3	150.6	86.2	86.5	130.1	0.93	0.93	0.86	0.90	0.93	0.89	0.080022	0.656651	-
Rv3666c	dppA	22	79.9	91.6	88.8	58.0	56.1	76.2	0.084	0.271	0.227	-0.346	-0.390	0.019	97.6	112.0	102.8	69.6	72.6	95.8	0.82	0.82	0.86	0.83	0.77	0.80	0.254367	1.000000	-
Rv3667	acs	36	76.5	101.2	70.1	126.8	117.7	94.5	-0.335	0.047	-0.453	0.359	0.255	-0.047	99.6	130.2	91.8	157.5	141.3	117.4	0.77	0.78	0.76	0.81	0.83	0.81	0.002731	0.047788	-
Rv3668c	-	8	198.2	224.6	214.6	209.2	254.1	199.2	-0.126	0.051	-0.013	-0.049	0.225	-0.118	198.2	224.6	214.6	209.2	254.1	199.2	1.00	1.00	1.00	1.00	1.00	1.00	0.955130	1.000000	-
Rv3669	-	4	20.6	31.9	15.6	18.7	30.2	36.1	-0.254	0.274	-0.566	-0.365	0.207	0.429	61.8	127.6	62.5	74.8	120.9	144.4	0.33	0.25	0.25	0.25	0.25	0.25	0.362591	1.000000	-
Rv3670	ephE	16	5.0	14.3	28.5	18.7	33.4	3.8	-1.159	-0.210	0.588	0.088	0.786	-1.334	19.9	25.3	53.6	40.8	46.5	12.3	0.25	0.56	0.53	0.46	0.72	0.31	0.000000	0.000002	-
Rv3671c	-	12	18.3	19.0	9.1	9.1	19.2	11.1	0.272	0.317	-0.450	-0.456	0.325	-0.263	43.9	32.6	24.3	21.8	30.7	24.2	0.42	0.58	0.38	0.42	0.62	0.46	0.264233	1.000000	-
Rv3672c	-	9	119.0	103.2	116.4	128.0	142.5	151.3	-0.087	-0.283	-0.118	0.014	0.163	0.247	133.9	116.1	123.2	144.0	142.5	170.3	0.89	0.89	0.94	0.89	1.00	0.89	0.716285	1.000000	-
Rv3673c	-	7	13.5	16.7	17.4	1.4	3.1	11.5	0.243	0.477	0.526	-1.291	-0.944	0.079	25.7	33.4	34.9	14.4	14.5	20.1	0.52	0.50	0.50	0.10	0.21	0.57	0.000844	0.017265	-
Rv3674c	nth	11	211.4	207.3	183.4	228.2	241.8	211.0	-0.016	-0.044	-0.216	0.091	0.174	-0.019	240.6	228.0	224.1	228.2	241.8	232.1	0.88	0.91	0.82	1.00	1.00	0.91	0.310525	1.000000	-
Rv3675	-	5	139.4	143.3	152.0	112.4	130.1	130.5	0.049	0.087	0.169	-0.250	-0.047	-0.043	149.4	143.3	152.0	112.4	130.1	163.2	0.93	1.00	1.00	1.00	1.00	0.80	0.666507	1.000000	-
Rv3676	-	2	48.0	10.1	54.8	0.0	9.5	15.2	0.925	-0.889	1.098	-2.482	-0.946	-0.469	48.0	13.4	54.8	0.0	12.7	15.2	1.00	0.75	1.00	0.00	0.75	1.00	0.000102	0.002582	-
Rv3677c	-	9	82.3	104.5	104.0	80.2	85.6	98.7	-0.161	0.166	0.160	-0.195	-0.107	0.089	85.4	104.5	124.8	86.6	96.3	111.1	0.96	1.00	0.83	0.93	0.89	0.89	0.616720	1.000000	-
Rv3678c	-	6	243.6	236.7	257.8	238.9	198.1	191.5	0.095	0.054	0.175	0.067	-0.197	-0.244	292.3	284.0	309.4	286.6	216.1	229.8	0.83	0.83	0.83	0.83	0.92	0.83	0.997618	1.000000	-
Rv3678A	-	2	68.5	101.6	57.6	63.7	69.0	69.1	-0.060	0.478	-0.290	-0.157	-0.050	-0.047	68.5	101.6	57.6	63.7	69.0	69.1	1.00	1.00	1.00	1.00	1.00	1.00	0.296670	1.000000	-
Rv3679	-	12	250.6	264.1	250.2	224.2	246.1	245.4	0.022	0.096	0.020	-0.135	-0.004	-0.008	281.9	275.6	273.0	244.6	295.3	267.7	0.89	0.96	0.92	0.92	0.83	0.92	0.966682	1.000000	-
Rv3680	-	19	148.4	150.0	112.6	127.6	126.1	163.6	0.101	0.115	-0.282	-0.110	-0.126	0.237	165.8	162.8	122.3	139.8	133.1	182.9	0.89	0.92	0.92	0.91	0.95	0.89	0.354940	1.000000	-
Rv3681c	whiB4	7	144.9	153.5	164.3	144.1	161.7	169.4	-0.106	-0.025	0.070	-0.113	0.047	0.113	178.9	165.3	176.9	151.3	161.7	182.4	0.81	0.93	0.93	0.95	1.00	0.93	0.860056	1.000000	-
Rv3682	ponA2	36	91.4	158.3	92.7	143.3	197.5	115.5	-0.518	0.242	-0.500	0.103	0.552	-0.197	102.9	162.8	105.9	146.0	197.5	117.1	0.89	0.97	0.88	0.98	1.00	0.99	0.000000	0.000000	-
Rv3683	-	11	153.0	164.4	154.4	129.6	153.6	163.1	0.000	0.100	0.012	-0.231	0.005	0.089	157.8	180.8	178.8	129.6	153.6	163.1	0.97	0.91	0.86	1.00	1.00	1.00	0.354333	1.000000	-
Rv3684	-	16	157.2	185.3	183.3	161.1	184.2	149.4	-0.111	0.120	0.105	-0.075	0.112	-0.182	157.2	197.6	189.2	179.9	184.2	159.3	1.00	0.94	0.97	0.90	1.00	0.94	0.206871	1.000000	-
Rv3685c	cyp137	17	216.4	220.3	203.0	211.0	204.7	168.7	0.083	0.108	-0.007	0.047	0.005	-0.267	225.3	249.7	209.1	224.2	232.0	173.8	0.96	0.88	0.97	0.94	0.88	0.97	0.536237	1.000000	-
Rv3686c	-	5	221.1	191.7	172.6	181.6	211.7	198.0	0.169	-0.032	-0.179	-0.108	0.108	0.013	276.4	239.6	215.8	227.1	264.7	198.0	0.80	0.80	0.80	0.80	0.80	1.00	0.896927	1.000000	-
Rv3687c	rsfB	5	16.7	16.4	26.3	19.7	17.0	24.6	-0.213	-0.230	0.317	-0.025	-0.192	0.238	27.8	20.5	43.8	32.8	28.3	35.1	0.60	0.80	0.60	0.60	0.60	0.70	0.486197	1.000000	-
Rv3688c	-	5	183.5	190.2	161.8	180.4	188.6	217.9	-0.027	0.023	-0.203	-0.051	0.012	0.214	196.6	190.2	161.8	180.4	188.6	217.9	0.93	1.00	1.00	1.00	1.00	1.00	0.960373	1.000000	-
Rv3689	-	30	138.2	142.1	157.7	161.7	166.7	160.5	-0.155	-0.116	0.028	0.064	0.106	0.053	161.6	164.0	175.2	191.5	208.4	185.2	0.86	0.87	0.90	0.84	0.80	0.87	0.301676	1.000000	-
Rv3690	-	11	92.1	111.6	113.4	90.2	111.8	127.4	-0.215	0.048	0.071	-0.245	0.051	0.232	108.6	111.6	118.8	93.0	117.1	127.4	0.85	1.00	0.95	0.97	0.95	1.00	0.280920	1.000000	-
Rv3691	-	14	174.5	159.7	184.1	194.7	185.8	149.7	-0.002	-0.126	0.073	0.152	0.086	-0.216	192.8	172.0	198.3	204.5	200.0	161.2	0.90	0.93	0.93	0.95	0.93	0.93	0.994402	1.000000	-
Rv3692	moxR2	15	153.4	122.5	151.7	166.2	157.1	157.6	0.018	-0.295	0.002	0.130	0.051	0.056	164.4	122.5	162.5	166.2	168.3	163.1	0.93	1.00	0.93	1.00	0.93	0.97	0.382091	1.000000	-
Rv3693	-	13	170.2	145.2	167.5	152.6	128.8	146.5	0.160	-0.062	0.138	0.008	-0.229	-0.050	207.4	157.2	174.2	186.0	145.6	158.7	0.82	0.92	0.96	0.82	0.88	0.92	0.673521	1.000000	-
Rv3694c	-	15	124.2	124.6	119.6	109.8	131.5	127.4	0.016	0.019	-0.037	-0.156	0.094	0.051	199.7	186.8	188.9	170.4	179.3	173.8	0.62	0.67	0.63	0.64	0.73	0.73	0.999893	1.000000	-
Rv3695	-	9	118.7	120.4	108.0	150.7	133.5	111.7	-0.058	-0.039	-0.189	0.273	0.105	-0.143	178.1	154.8	176.7	156.5	150.2	143.6	0.67	0.78	0.61	0.96	0.89	0.78	0.291817	1.000000	-
Rv3696c	glpK	26	42.9	60.9	43.7	29.6	32.7	49.2	-0.008	0.453	0.016	-0.478	-0.352	0.169	52.3	63.4	56.8	41.2	42.6	55.6	0.82	0.96	0.77	0.72	0.77	0.88	0.001866	0.034463	-
Rv3697c	-	9	171.7	185.0	133.4	165.6	171.7	155.8	0.066	0.170	-0.287	0.015	0.065	-0.071	171.7	185.0	133.4	165.6	171.7	155.8	1.00	1.00	1.00	1.00	1.00	1.00	0.816123	1.000000	-
Rv3698	-	32	71.4	71.9	80.8	74.6	91.0	78.2	-0.120	-0.110	0.049	-0.060	0.210	0.004	97.9	83.7	101.4	86.3	107.8	94.5	0.73	0.86	0.80	0.86	0.84	0.83	0.605697	1.000000	-
Rv3699	-	9	181.9	161.5	151.5	168.8	145.0	160.3	0.167	0.000	-0.090	0.062	-0.151	-0.010	188.9	161.5	170.4	175.3	145.0	160.3	0.96	1.00	0.89	0.96	1.00	1.00	0.849546	1.000000	-
Rv3700c	-	13	176.2	171.2	156.0	182.2	150.0	145.7	0.105	0.064	-0.066	0.151	-0.121	-0.162	180.9	185.5	169.0	182.2	156.0	151.5	0.97	0.92	0.92	1.00	0.96	0.96	0.867383	1.000000	-
Rv3701c	-	15	37.7	35.4	59.3	46.6	46.0	41.2	-0.209	-0.290	0.381	0.065	0.047	-0.096	62.9	62.5	77.3	70.0	65.8	49.4	0.60	0.57	0.77	0.67	0.70	0.83	0.460313	1.000000	-
Rv3702c	-	8	110.5	74.6	147.9	76.0	119.3	92.9	0.090	-0.448	0.495	-0.422	0.196	-0.149	120.5	99.4	147.9	96.0	127.3	99.1	0.92	0.75	1.00	0.79	0.94	0.94	0.166457	0.996892	-
Rv3703c	-	17	203.3	199.4	224.5	205.6	182.7	197.0	0.009	-0.019	0.149	0.024	-0.142	-0.036	241.1	205.4	254.5	214.0	188.2	216.0	0.84	0.97	0.88	0.96	0.97	0.91	0.645549	1.000000	-
Rv3704c	gshA	12	260.2	213.3	241.4	235.0	228.3	237.3	0.139	-0.142	0.033	-0.006	-0.046	0.008	323.0	232.7	305.0	291.7	249.1	271.2	0.81	0.92	0.79	0.81	0.92	0.88	0.968455	1.000000	-
Rv3705c	-	9	158.0	133.7	135.3	127.8	130.2	157.2	0.165	-0.068	-0.051	-0.130	-0.105	0.158	170.6	150.4	152.2	143.8	130.2	176.9	0.93	0.89	0.89	0.89	1.00	0.89	0.846318	1.000000	-
Rv3705A	-	4	159.4	199.3	189.0	187.2	174.6	186.8	-0.191	0.122	0.047	0.034	-0.063	0.031	159.4	199.3	189.0	187.2	174.6	186.8	1.00	1.00	1.00	1.00	1.00	1.00	0.990373	1.000000	-
Rv3706c	-	3	26.8	18.6	8.4	26.8	38.5	33.5	0.064	-0.368	-1.184	0.063	0.516	0.339	30.2	18.6	16.8	30.2	38.5	33.5	0.89	1.00	0.50	0.89	1.00	1.00	0.025376	0.284416	-
Rv3707c	-	12	272.8	210.4	219.4	245.9	226.8	233.1	0.213	-0.154	-0.095	0.066	-0.049	-0.010	280.6	210.4	219.4	245.9	226.8	233.1	0.97	1.00	1.00	1.00	1.00	1.00	0.892236	1.000000	-
Rv3708c	asd	9	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3709c	ask	12	0.0	0.0	0.0	0.4	0.0	0.0	-0.017	-0.017	-0.017	0.083	-0.017	-0.017	0.0	0.0	0.0	13.0	0.0	0.0	0.00	0.00	0.00	0.03	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3710	leuA	26	249.8	236.3	257.0	225.1	224.7	236.8	0.067	-0.012	0.107	-0.080	-0.083	-0.009	282.4	256.0	272.7	250.8	238.5	262.0	0.88	0.92	0.94	0.90	0.94	0.90	0.987518	1.000000	-
Rv3711c	dnaQ	14	111.8	111.8	99.8	118.8	121.8	127.1	-0.041	-0.041	-0.197	0.043	0.077	0.137	114.5	120.4	111.8	127.9	131.2	127.1	0.98	0.93	0.89	0.93	0.93	1.00	0.497343	1.000000	-
Rv3712	-	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3713	cobQ2	9	0.0	0.0	0.0	0.5	0.0	1.2	-0.081	-0.081	-0.081	0.065	-0.081	0.229	0.0	0.0	0.0	14.4	0.0	10.8	0.00	0.00	0.00	0.04	0.00	0.11	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3714c	-	12	230.0	227.9	238.0	202.6	205.8	217.7	0.061	0.048	0.109	-0.118	-0.096	-0.017	230.0	227.9	248.3	202.6	205.8	217.7	1.00	1.00	0.96	1.00	1.00	1.00	0.930273	1.000000	-
Rv3715c	recR	4	183.2	157.6	163.0	149.2	168.1	162.6	0.156	-0.056	-0.008	-0.132	0.035	-0.012	183.2	157.6	163.0	149.2	168.1	162.6	1.00	1.00	1.00	1.00	1.00	1.00	0.984201	1.000000	-
Rv3716c	-	3	163.9	126.0	136.7	178.8	139.2	95.7	0.220	-0.147	-0.034	0.341	-0.008	-0.527	163.9	126.0	164.0	178.8	139.2	95.7	1.00	1.00	0.83	1.00	1.00	1.00	0.760453	1.000000	-
Rv3717	-	10	165.6	142.6	149.6	168.6	173.9	162.5	0.044	-0.165	-0.098	0.069	0.113	0.018	198.7	158.4	166.2	180.7	193.2	180.6	0.83	0.90	0.90	0.93	0.90	0.90	0.990920	1.000000	-
Rv3718c	-	5	83.9	68.6	72.6	128.9	116.2	94.0	-0.155	-0.429	-0.352	0.435	0.292	-0.001	89.9	68.6	80.7	128.9	116.2	94.0	0.93	1.00	0.90	1.00	1.00	1.00	0.140132	0.913603	-
Rv3719	-	32	185.4	157.4	195.1	154.8	146.2	156.1	0.156	-0.073	0.228	-0.096	-0.176	-0.084	209.4	183.1	211.6	167.0	153.4	175.3	0.89	0.86	0.92	0.93	0.95	0.89	0.537981	1.000000	-
Rv3720	-	31	186.6	195.4	218.2	163.2	161.4	189.4	0.007	0.071	0.227	-0.181	-0.196	0.028	204.2	205.3	229.3	168.6	169.6	192.5	0.91	0.95	0.95	0.97	0.95	0.98	0.340648	1.000000	-
Rv3721c	dnaZX	23	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3722c	-	25	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3723	-	9	116.2	215.4	138.0	314.7	305.4	169.3	-0.826	0.037	-0.587	0.573	0.531	-0.302	120.7	215.4	138.0	314.7	343.6	169.3	0.96	1.00	1.00	1.00	0.89	1.00	0.000000	0.000018	-
Rv3724A	cut5a	2	93.8	170.2	170.6	137.9	117.7	187.1	-0.615	0.212	0.216	-0.081	-0.302	0.345	112.5	170.2	227.5	137.9	117.7	187.1	0.83	1.00	0.75	1.00	1.00	1.00	0.855708	1.000000	-
Rv3724B	cut5b	17	179.7	184.8	162.7	201.7	164.5	174.7	0.013	0.052	-0.126	0.175	-0.111	-0.026	203.7	209.4	167.7	209.9	174.8	191.6	0.88	0.88	0.97	0.96	0.94	0.91	0.736359	1.000000	-
Rv3725	-	11	272.3	280.8	259.7	301.1	298.5	324.5	-0.087	-0.043	-0.154	0.056	0.043	0.162	272.3	308.9	259.7	331.2	298.5	324.5	1.00	0.91	1.00	0.91	1.00	1.00	0.102479	0.747564	-
Rv3726	-	15	164.2	130.0	143.7	176.0	160.8	148.8	0.090	-0.235	-0.096	0.187	0.061	-0.047	167.9	144.5	154.0	176.0	160.8	148.8	0.98	0.90	0.93	1.00	1.00	1.00	0.285657	1.000000	-
Rv3727	-	37	181.0	203.3	176.7	188.6	192.6	197.3	-0.068	0.096	-0.101	-0.010	0.020	0.053	195.0	218.0	189.5	195.7	203.6	200.0	0.93	0.93	0.93	0.96	0.95	0.99	0.647867	1.000000	-
Rv3728	-	28	280.1	251.3	278.4	248.2	227.7	241.0	0.136	-0.017	0.127	-0.035	-0.157	-0.077	297.8	251.3	294.1	254.2	236.2	249.9	0.94	1.00	0.95	0.98	0.96	0.96	0.803558	1.000000	-
Rv3729	-	23	218.1	214.6	205.0	217.2	206.7	209.4	0.041	0.018	-0.046	0.035	-0.035	-0.016	255.1	246.8	235.7	249.7	231.9	224.1	0.86	0.87	0.87	0.87	0.89	0.93	0.998322	1.000000	-
Rv3730c	-	19	227.1	238.0	262.6	218.3	218.0	223.5	-0.025	0.041	0.180	-0.081	-0.083	-0.048	253.8	238.0	277.2	222.2	218.0	235.9	0.89	1.00	0.95	0.98	1.00	0.95	0.320659	1.000000	-
Rv3731	ligC	16	129.8	132.3	134.2	125.8	119.0	139.4	-0.003	0.024	0.043	-0.046	-0.124	0.096	155.7	146.0	165.1	137.2	136.0	143.9	0.83	0.91	0.81	0.92	0.88	0.97	0.876777	1.000000	-
Rv3732	-	16	222.9	191.6	212.9	219.6	214.6	216.9	0.064	-0.150	-0.001	0.043	0.010	0.025	267.5	204.4	219.7	245.2	228.9	247.8	0.83	0.94	0.97	0.90	0.94	0.88	0.715292	1.000000	-
Rv3733c	-	4	354.0	346.6	405.3	332.0	313.8	269.2	0.071	0.041	0.263	-0.020	-0.100	-0.318	472.0	462.2	463.2	442.7	418.4	358.9	0.75	0.75	0.88	0.75	0.75	0.75	0.999595	1.000000	-
Rv3734c	-	18	192.9	252.9	193.6	191.6	211.3	218.8	-0.121	0.261	-0.116	-0.130	0.007	0.057	204.2	260.1	199.1	199.0	217.3	231.7	0.94	0.97	0.97	0.96	0.97	0.94	0.784379	1.000000	-
Rv3735	-	5	235.8	277.6	267.7	223.3	261.0	282.0	-0.127	0.104	0.053	-0.203	0.017	0.126	235.8	277.6	267.7	223.3	261.0	282.0	1.00	1.00	1.00	1.00	1.00	1.00	0.969722	1.000000	-
Rv3736	-	19	156.4	173.5	164.8	171.8	182.2	199.6	-0.155	-0.010	-0.082	-0.024	0.059	0.187	159.2	173.5	164.8	171.8	182.2	199.6	0.98	1.00	1.00	1.00	1.00	1.00	0.668761	1.000000	-
Rv3737	-	15	189.9	205.0	214.7	180.3	191.4	158.8	-0.001	0.107	0.172	-0.074	0.010	-0.252	224.9	227.7	247.8	208.1	220.8	183.2	0.84	0.90	0.87	0.87	0.87	0.87	0.999661	1.000000	-
Rv3738c	PPE66	16	272.9	258.4	269.9	247.1	252.0	220.9	0.104	0.027	0.089	-0.036	-0.008	-0.195	272.9	258.4	278.6	247.1	252.0	220.9	1.00	1.00	0.97	1.00	1.00	1.00	0.983985	1.000000	-
Rv3739c	PPE67	4	287.4	297.3	282.6	315.3	316.5	330.7	-0.084	-0.036	-0.108	0.047	0.053	0.115	287.4	297.3	282.6	315.3	316.5	377.9	1.00	1.00	1.00	1.00	1.00	0.88	0.859222	1.000000	-
Rv3740c	-	17	397.3	332.3	359.9	355.4	345.6	352.3	0.152	-0.102	0.011	-0.007	-0.047	-0.019	397.3	332.3	359.9	355.4	345.6	352.3	1.00	1.00	1.00	1.00	1.00	1.00	0.931684	1.000000	-
Rv3741c	-	7	227.7	202.3	196.0	198.5	193.1	179.8	0.186	0.019	-0.025	-0.008	-0.046	-0.147	281.3	217.9	211.1	198.5	225.3	179.8	0.81	0.93	0.93	1.00	0.86	1.00	0.495757	1.000000	-
Rv3742c	-	5	367.8	302.7	332.4	327.1	268.0	292.6	0.220	-0.057	0.076	0.053	-0.230	-0.105	367.8	302.7	332.4	327.1	335.0	292.6	1.00	1.00	1.00	1.00	0.80	1.00	0.530803	1.000000	-
Rv3743c	ctpJ	29	178.7	170.8	179.7	168.6	167.4	159.4	0.064	0.000	0.072	-0.018	-0.028	-0.097	194.3	190.5	200.5	181.1	173.4	168.1	0.92	0.90	0.90	0.93	0.97	0.95	0.979188	1.000000	-
Rv3744	-	7	320.6	303.1	259.9	257.9	279.0	286.9	0.169	0.089	-0.128	-0.139	-0.028	0.012	374.0	353.6	259.9	300.9	325.5	334.7	0.86	0.86	1.00	0.86	0.86	0.86	0.763334	1.000000	-
Rv3745c	-	2	373.5	410.9	566.0	409.1	367.8	417.3	-0.181	-0.045	0.412	-0.051	-0.203	-0.023	373.5	410.9	566.0	409.1	367.8	417.3	1.00	1.00	1.00	1.00	1.00	1.00	0.986749	1.000000	-
Rv3746c	PE34	5	218.4	237.2	208.4	226.5	231.5	219.6	-0.033	0.083	-0.099	0.018	0.049	-0.025	218.4	237.2	260.5	226.5	231.5	219.6	1.00	1.00	0.80	1.00	1.00	1.00	0.632525	1.000000	-
Rv3747	-	4	66.4	50.7	45.3	57.7	83.2	74.6	0.070	-0.287	-0.434	-0.118	0.376	0.228	79.7	81.2	60.4	76.9	95.1	99.5	0.83	0.62	0.75	0.75	0.88	0.75	0.894070	1.000000	-
Rv3748	-	5	128.3	113.8	125.8	88.0	101.2	104.3	0.210	0.044	0.183	-0.310	-0.118	-0.077	160.4	113.8	139.8	94.3	101.2	115.8	0.80	1.00	0.90	0.93	1.00	0.90	0.822219	1.000000	-
Rv3749c	-	12	154.8	165.3	161.0	144.9	143.9	176.8	-0.027	0.065	0.028	-0.119	-0.129	0.160	154.8	165.3	161.0	144.9	143.9	176.8	1.00	1.00	1.00	1.00	1.00	1.00	0.941937	1.000000	-
Rv3750c	-	5	134.1	137.9	106.5	121.3	106.8	159.7	0.068	0.106	-0.252	-0.071	-0.247	0.311	134.1	137.9	106.5	121.3	106.8	159.7	1.00	1.00	1.00	1.00	1.00	1.00	0.529901	1.000000	-
Rv3751	-	1	349.6	345.8	418.6	390.5	324.1	339.4	-0.047	-0.063	0.210	0.111	-0.155	-0.089	349.6	345.8	418.6	390.5	324.1	339.4	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3752c	-	2	7.4	12.8	3.1	2.2	3.6	5.1	0.213	0.734	-0.393	-0.578	-0.311	-0.090	22.2	25.6	12.6	13.0	14.5	10.1	0.33	0.50	0.25	0.17	0.25	0.50	0.468727	1.000000	-
Rv3753c	-	4	17.1	26.9	18.8	29.9	30.7	16.2	-0.357	0.176	-0.249	0.305	0.336	-0.416	40.9	53.8	30.0	51.3	40.9	21.6	0.42	0.50	0.62	0.58	0.75	0.75	0.421991	1.000000	-
Rv3754	tyrA	11	0.5	0.5	0.0	0.0	0.0	0.5	0.069	0.058	-0.068	-0.068	-0.068	0.067	16.4	10.0	0.0	0.0	0.0	10.8	0.03	0.05	0.00	0.00	0.00	0.05	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3755c	-	11	207.0	192.2	180.1	118.0	141.9	156.8	0.310	0.206	0.114	-0.475	-0.219	-0.080	207.0	192.2	188.7	144.2	156.1	172.5	1.00	1.00	0.95	0.82	0.91	0.91	0.079680	0.655513	-
Rv3756c	proZ	13	222.6	211.8	203.2	170.1	183.0	195.9	0.167	0.096	0.038	-0.212	-0.109	-0.013	248.0	229.4	211.4	184.3	183.0	195.9	0.90	0.92	0.96	0.92	1.00	1.00	0.364496	1.000000	-
Rv3757c	proW	12	217.0	251.3	225.3	231.4	218.1	207.2	-0.051	0.156	0.002	0.039	-0.044	-0.117	244.1	287.2	257.5	260.3	237.9	226.0	0.89	0.88	0.88	0.89	0.92	0.92	0.999948	1.000000	-
Rv3758c	proV	13	72.5	96.8	71.3	74.6	73.6	79.4	-0.099	0.294	-0.121	-0.061	-0.080	0.024	88.4	132.5	88.3	90.9	95.6	121.5	0.82	0.73	0.81	0.82	0.77	0.65	0.045004	0.446138	-
Rv3759c	proX	12	34.4	32.6	36.2	31.5	37.4	41.1	-0.042	-0.108	0.024	-0.151	0.064	0.186	51.5	39.1	51.1	47.3	42.7	58.1	0.67	0.83	0.71	0.67	0.88	0.71	0.660894	1.000000	-
Rv3760	-	5	219.7	192.8	212.8	183.7	181.4	180.7	0.167	-0.017	0.121	-0.085	-0.103	-0.108	235.4	275.5	212.8	211.9	181.4	180.7	0.93	0.70	1.00	0.87	1.00	1.00	0.412506	1.000000	-
Rv3761c	fadE36	15	133.8	147.0	152.0	130.0	145.0	148.5	-0.090	0.041	0.088	-0.130	0.022	0.056	140.0	157.5	162.9	146.3	167.3	153.6	0.96	0.93	0.93	0.89	0.87	0.97	0.818868	1.000000	-
Rv3762c	-	28	187.9	157.3	195.3	171.8	154.3	163.8	0.127	-0.123	0.181	0.000	-0.150	-0.066	199.8	163.1	198.9	173.9	160.0	173.1	0.94	0.96	0.98	0.99	0.96	0.95	0.836236	1.000000	-
Rv3763	lpqH	8	27.9	30.6	23.1	29.2	22.2	29.7	0.033	0.149	-0.194	0.091	-0.238	0.112	55.7	54.4	52.8	53.9	32.3	59.4	0.50	0.56	0.44	0.54	0.69	0.50	0.766380	1.000000	-
Rv3764c	-	14	0.0	0.0	0.0	0.0	0.6	0.0	-0.031	-0.031	-0.031	-0.031	0.144	-0.031	0.0	0.0	0.0	0.0	9.0	0.0	0.00	0.00	0.00	0.00	0.07	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3765c	-	12	154.8	143.3	137.3	139.0	139.0	156.3	0.091	-0.016	-0.076	-0.058	-0.058	0.105	154.8	143.3	137.3	139.0	139.0	156.3	1.00	1.00	1.00	1.00	1.00	1.00	0.932118	1.000000	-
Rv3766	-	15	172.8	134.9	191.7	166.4	145.8	155.1	0.098	-0.248	0.244	0.045	-0.139	-0.053	176.7	144.6	191.7	178.3	145.8	160.5	0.98	0.93	1.00	0.93	1.00	0.97	0.451354	1.000000	-
Rv3767c	-	14	119.8	123.4	136.2	135.2	138.2	159.4	-0.169	-0.128	0.009	-0.002	0.029	0.228	139.8	150.3	146.7	149.4	154.8	202.9	0.86	0.82	0.93	0.90	0.89	0.79	0.494161	1.000000	-
Rv3768	-	12	151.7	155.3	160.0	180.0	157.6	165.0	-0.089	-0.055	-0.014	0.151	-0.035	0.029	176.1	169.5	182.9	185.2	171.9	172.1	0.86	0.92	0.88	0.97	0.92	0.96	0.960113	1.000000	-
Rv3769	-	1	228.6	157.0	144.5	143.0	141.7	81.1	0.598	0.070	-0.045	-0.060	-0.074	-0.843	228.6	157.0	144.5	143.0	141.7	81.1	1.00	1.00	1.00	1.00	1.00	1.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3770c	-	6	339.1	306.3	302.6	351.1	280.0	245.9	0.155	0.010	-0.007	0.204	-0.117	-0.301	339.1	306.3	302.6	351.1	280.0	245.9	1.00	1.00	1.00	1.00	1.00	1.00	0.803014	1.000000	-
Rv3770A	-	2	355.0	349.6	344.6	385.1	343.3	205.2	0.102	0.080	0.060	0.218	0.054	-0.675	355.0	349.6	344.6	385.1	343.3	205.2	1.00	1.00	1.00	1.00	1.00	1.00	0.296903	1.000000	-
Rv3770B	-	2	423.3	318.7	322.3	320.1	241.4	341.4	0.364	-0.040	-0.024	-0.034	-0.434	0.057	423.3	318.7	322.3	320.1	241.4	341.4	1.00	1.00	1.00	1.00	1.00	1.00	0.579863	1.000000	-
Rv3771c	-	2	238.6	130.0	57.9	205.6	149.4	163.7	0.584	-0.268	-1.369	0.374	-0.075	0.054	357.9	259.9	115.8	411.3	298.7	163.7	0.67	0.50	0.50	0.50	0.50	1.00	0.483089	1.000000	-
Rv3772	hisC2	17	203.8	212.1	202.0	199.6	199.3	191.9	0.016	0.072	0.004	-0.013	-0.015	-0.068	231.0	300.4	245.2	216.6	242.0	191.9	0.88	0.71	0.82	0.92	0.82	1.00	0.016171	0.201000	-
Rv3773c	-	7	122.8	143.0	119.0	123.0	135.2	169.0	-0.134	0.076	-0.179	-0.132	-0.002	0.310	122.8	143.0	128.1	123.0	145.6	169.0	1.00	1.00	0.93	1.00	0.93	1.00	0.689638	1.000000	-
Rv3774	echA21	12	262.6	232.1	267.4	217.9	222.2	114.8	0.253	0.079	0.279	-0.010	0.017	-0.906	286.5	242.2	267.4	237.7	222.2	114.8	0.92	0.96	1.00	0.92	1.00	1.00	0.000048	0.001307	-
Rv3775	lipE	20	271.6	205.2	295.7	197.0	192.7	91.8	0.370	-0.026	0.491	-0.083	-0.114	-1.144	276.2	216.0	295.7	197.0	197.7	96.7	0.98	0.95	1.00	1.00	0.97	0.95	0.000000	0.000016	-
Rv3776	-	20	214.4	219.0	236.8	215.1	222.8	214.2	-0.039	-0.009	0.102	-0.034	0.016	-0.040	214.4	230.5	242.9	215.1	222.8	214.2	1.00	0.95	0.97	1.00	1.00	1.00	0.536003	1.000000	-
Rv3777	-	13	229.0	188.2	160.6	178.4	190.3	196.2	0.259	-0.016	-0.239	-0.092	-0.001	0.042	270.6	188.2	181.5	178.4	190.3	212.6	0.85	1.00	0.88	1.00	1.00	0.92	0.034173	0.361667	-
Rv3778c	-	14	7.1	21.4	7.8	5.4	15.8	7.0	-0.379	0.744	-0.299	-0.596	0.398	-0.389	25.0	30.0	21.9	20.8	26.0	19.7	0.29	0.71	0.36	0.26	0.61	0.36	0.003278	0.056378	-
Rv3779	-	40	159.3	165.1	142.9	152.6	147.2	161.8	0.040	0.090	-0.112	-0.020	-0.070	0.061	175.4	178.5	158.8	171.2	163.6	165.9	0.91	0.93	0.90	0.89	0.90	0.97	0.738163	1.000000	-
Rv3780	-	6	7.9	8.4	0.0	7.7	6.2	11.9	0.103	0.155	-1.265	0.084	-0.106	0.493	23.7	20.1	0.0	27.9	18.5	17.9	0.33	0.42	0.00	0.28	0.33	0.67	0.062066	0.550317	-
Rv3781	rfbE	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3782	-	17	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3783	rfbD	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3784	-	24	261.4	244.1	245.2	225.4	249.7	243.6	0.092	-0.005	0.002	-0.117	0.028	-0.008	276.8	244.1	255.9	225.4	260.6	243.6	0.94	1.00	0.96	1.00	0.96	1.00	0.249504	1.000000	-
Rv3785	-	12	354.4	323.9	355.1	311.4	310.0	284.3	0.131	0.003	0.134	-0.053	-0.059	-0.182	354.4	323.9	355.1	311.4	310.0	284.3	1.00	1.00	1.00	1.00	1.00	1.00	0.925564	1.000000	-
Rv3786c	-	20	298.1	243.9	266.9	267.7	265.1	259.3	0.157	-0.127	0.000	0.004	-0.009	-0.040	298.1	243.9	266.9	267.7	265.1	266.0	1.00	1.00	1.00	1.00	1.00	0.97	0.990806	1.000000	-
Rv3787c	-	6	185.5	177.9	162.6	147.5	170.4	157.9	0.148	0.089	-0.037	-0.173	0.029	-0.078	256.8	177.9	195.1	189.7	204.5	157.9	0.72	1.00	0.83	0.78	0.83	1.00	0.463783	1.000000	-
Rv3788	-	6	361.2	320.9	338.0	276.2	348.2	342.2	0.124	-0.044	0.029	-0.258	0.071	0.047	406.3	385.1	338.0	276.2	348.2	410.6	0.89	0.83	1.00	1.00	1.00	0.83	0.346623	1.000000	-
Rv3789	-	8	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3790	-	24	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3791	-	11	0.0	0.0	0.0	0.0	0.7	0.0	-0.031	-0.031	-0.031	-0.031	0.147	-0.031	0.0	0.0	0.0	0.0	14.5	0.0	0.00	0.00	0.00	0.00	0.05	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3792	-	31	0.4	0.0	0.2	0.0	0.0	0.2	0.079	-0.037	0.021	-0.037	-0.037	0.006	19.5	0.0	12.6	0.0	0.0	9.4	0.02	0.00	0.02	0.00	0.00	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3793	embC	39	0.2	0.0	0.5	0.0	0.7	0.0	0.002	-0.066	0.068	-0.066	0.116	-0.066	14.0	0.0	18.9	0.0	26.2	0.0	0.02	0.00	0.03	0.00	0.03	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3794	embA	50	1.8	3.2	2.3	2.2	3.5	2.0	-0.134	0.123	-0.036	-0.055	0.177	-0.103	91.7	158.4	115.8	110.9	116.1	99.2	0.02	0.02	0.02	0.02	0.03	0.02	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3795	embB	48	0.1	0.1	0.0	0.0	0.0	0.0	0.014	0.021	-0.009	-0.009	-0.009	-0.009	11.6	10.0	0.0	0.0	0.0	0.0	0.01	0.01	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3796	-	23	90.4	81.5	80.2	87.9	100.2	97.0	0.013	-0.129	-0.149	-0.025	0.154	0.110	94.5	83.3	94.6	93.3	104.7	103.7	0.96	0.98	0.85	0.94	0.96	0.93	0.472916	1.000000	-
Rv3797	fadE35	20	255.1	249.5	236.2	237.0	234.5	248.4	0.066	0.034	-0.043	-0.038	-0.053	0.029	268.6	249.5	248.6	249.5	246.8	254.8	0.95	1.00	0.95	0.95	0.95	0.97	0.936709	1.000000	-
Rv3798	-	15	263.5	250.5	245.7	239.6	223.0	246.2	0.104	0.033	0.005	-0.030	-0.131	0.009	282.3	268.4	263.2	250.7	257.3	246.2	0.93	0.93	0.93	0.96	0.87	1.00	0.861560	1.000000	-
Rv3799c	accD4	16	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3800c	pks13	48	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3801c	fadD32	22	0.0	0.2	0.3	0.2	0.7	0.0	-0.065	0.002	0.016	-0.009	0.113	-0.065	0.0	10.4	12.6	13.0	28.9	0.0	0.00	0.02	0.02	0.02	0.02	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3802c	-	20	215.0	175.5	208.4	26.3	20.4	108.1	0.752	0.467	0.708	-2.060	-2.363	-0.207	215.0	184.7	213.8	43.9	35.5	113.8	1.00	0.95	0.97	0.60	0.57	0.95	0.000000	0.000000	-
Rv3803c	fbpD	14	75.4	67.7	69.6	68.9	65.2	87.3	0.056	-0.089	-0.052	-0.066	-0.140	0.255	87.9	82.4	84.7	90.4	91.2	111.1	0.86	0.82	0.82	0.76	0.71	0.79	0.630547	1.000000	-
Rv3804c	fbpA	15	37.9	63.9	46.6	90.4	101.4	61.7	-0.747	-0.063	-0.481	0.407	0.563	-0.109	41.6	63.9	53.7	94.7	101.4	63.9	0.91	1.00	0.87	0.96	1.00	0.97	0.000000	0.000000	-
Rv3805c	-	38	0.0	0.1	0.0	0.0	0.0	0.0	-0.007	0.032	-0.007	-0.007	-0.007	-0.007	0.0	10.4	0.0	0.0	0.0	0.0	0.00	0.01	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3806c	-	17	0.0	0.3	0.0	0.0	0.0	0.3	-0.030	0.056	-0.030	-0.030	-0.030	0.059	0.0	10.4	0.0	0.0	0.0	10.8	0.00	0.03	0.00	0.00	0.00	0.03	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3807c	-	4	23.0	41.8	31.2	26.9	32.9	21.3	-0.303	0.439	0.070	-0.113	0.135	-0.395	39.4	66.9	62.5	53.9	65.8	42.5	0.58	0.62	0.50	0.50	0.50	0.50	0.864732	1.000000	-
Rv3808c	glfT	27	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3809c	glf	32	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3810	pirG	13	102.5	134.0	99.9	116.9	208.8	99.5	-0.295	0.075	-0.331	-0.114	0.696	-0.336	148.1	158.4	108.2	138.1	226.2	117.6	0.69	0.85	0.92	0.85	0.92	0.85	0.086243	0.684368	-
Rv3811	-	25	186.9	213.4	202.4	195.4	203.2	180.8	-0.074	0.112	0.038	-0.012	0.044	-0.121	206.2	227.0	230.0	209.3	220.9	192.4	0.91	0.94	0.88	0.93	0.92	0.94	0.986380	1.000000	-
Rv3812	PE_PGRS62	27	102.9	119.8	113.8	99.6	95.7	99.9	-0.032	0.179	0.108	-0.077	-0.132	-0.072	112.6	134.8	139.7	107.5	107.6	110.1	0.91	0.89	0.81	0.93	0.89	0.91	0.655523	1.000000	-
Rv3813c	-	12	176.7	146.9	164.7	163.2	195.2	161.8	0.070	-0.189	-0.029	-0.041	0.210	-0.054	192.8	160.2	179.6	178.1	195.2	161.8	0.92	0.92	0.92	0.92	1.00	1.00	0.697781	1.000000	-
Rv3814c	-	11	179.4	214.4	210.8	197.3	184.4	187.9	-0.122	0.128	0.104	0.012	-0.084	-0.057	179.4	214.4	210.8	197.3	184.4	187.9	1.00	1.00	1.00	1.00	1.00	1.00	0.964202	1.000000	-
Rv3815c	-	11	288.0	286.3	299.1	280.7	283.5	274.1	0.013	0.005	0.067	-0.023	-0.009	-0.057	306.5	286.3	299.1	280.7	283.5	301.5	0.94	1.00	1.00	1.00	1.00	0.91	0.562520	1.000000	-
Rv3816c	-	12	19.0	12.7	22.7	20.2	21.0	14.6	0.040	-0.400	0.245	0.109	0.152	-0.253	40.3	27.7	36.3	42.8	50.4	31.9	0.47	0.46	0.62	0.47	0.42	0.46	0.593857	1.000000	-
Rv3817	-	8	237.7	226.9	219.0	159.8	197.4	171.1	0.230	0.164	0.114	-0.329	-0.032	-0.233	237.7	259.3	219.0	174.4	210.6	171.1	1.00	0.88	1.00	0.92	0.94	1.00	0.426037	1.000000	-
Rv3818	-	31	99.1	105.6	106.6	121.1	115.8	102.7	-0.125	-0.037	-0.024	0.152	0.090	-0.075	119.7	116.9	120.2	150.1	143.5	113.7	0.83	0.90	0.89	0.81	0.81	0.90	0.238150	1.000000	-
Rv3819	-	7	62.6	57.3	83.4	75.4	51.8	52.3	-0.025	-0.144	0.361	0.225	-0.276	-0.264	73.1	61.7	97.3	88.0	60.4	61.0	0.86	0.93	0.86	0.86	0.86	0.86	0.968989	1.000000	-
Rv3820c	papA2	37	140.5	130.2	138.0	126.1	119.8	149.2	0.066	-0.039	0.041	-0.084	-0.156	0.150	177.2	153.0	179.1	142.8	145.3	178.0	0.79	0.85	0.77	0.88	0.82	0.84	0.626696	1.000000	-
Rv3821	-	17	233.7	219.3	188.1	205.3	214.6	235.8	0.110	0.020	-0.196	-0.073	-0.010	0.123	270.9	240.5	220.5	218.1	251.6	250.6	0.86	0.91	0.85	0.94	0.85	0.94	0.831642	1.000000	-
Rv3822	-	35	78.1	85.6	91.3	72.8	79.7	92.5	-0.088	0.037	0.125	-0.183	-0.061	0.142	97.6	101.6	116.2	86.9	87.1	99.6	0.80	0.84	0.79	0.84	0.91	0.93	0.407417	1.000000	-
Rv3823c	mmpL8	72	68.2	79.3	71.0	77.5	75.2	71.4	-0.105	0.097	-0.051	0.067	0.025	-0.044	118.9	107.7	113.6	113.9	105.1	92.6	0.57	0.74	0.62	0.68	0.72	0.77	0.210511	1.000000	-
Rv3824c	papA1	38	154.8	128.4	141.6	113.7	120.4	138.3	0.213	-0.048	0.088	-0.216	-0.137	0.056	176.5	150.1	168.1	132.3	132.6	154.6	0.88	0.86	0.84	0.86	0.91	0.89	0.905745	1.000000	-
Rv3825c	pks2	106	255.9	215.3	266.8	208.0	196.1	223.9	0.165	-0.079	0.224	-0.127	-0.210	-0.024	286.5	242.8	305.7	248.7	231.0	247.2	0.89	0.89	0.87	0.84	0.85	0.91	0.068984	0.593199	-
Rv3826	fadD23	46	27.5	31.3	31.2	24.5	29.9	32.6	-0.087	0.072	0.069	-0.225	0.017	0.125	48.6	49.6	59.8	41.3	44.4	41.7	0.57	0.63	0.52	0.59	0.67	0.78	0.075454	0.625905	-
Rv3827c	-	18	182.3	180.1	179.0	193.4	178.4	166.5	0.018	0.001	-0.007	0.101	-0.012	-0.109	205.1	202.6	201.4	197.0	200.7	171.3	0.89	0.89	0.89	0.98	0.89	0.97	0.674296	1.000000	-
Rv3828c	-	7	131.2	86.7	134.9	121.1	115.2	109.6	0.166	-0.406	0.204	0.054	-0.014	-0.084	137.8	86.7	145.2	133.8	115.2	109.6	0.95	1.00	0.93	0.90	1.00	1.00	0.690172	1.000000	-
Rv3829c	-	26	147.5	143.4	139.2	124.8	124.4	133.3	0.119	0.080	0.038	-0.114	-0.118	-0.022	213.1	173.4	195.7	162.2	161.7	144.4	0.69	0.83	0.71	0.77	0.77	0.92	0.279959	1.000000	-
Rv3830c	-	10	179.7	172.2	141.0	146.1	185.1	158.8	0.130	0.070	-0.210	-0.160	0.171	-0.043	179.7	172.2	148.4	146.1	185.1	176.4	1.00	1.00	0.95	1.00	1.00	0.90	0.297927	1.000000	-
Rv3831	-	11	317.2	273.7	284.4	267.1	247.7	253.9	0.208	-0.001	0.053	-0.036	-0.143	-0.108	348.9	301.1	298.0	267.1	272.5	279.3	0.91	0.91	0.95	1.00	0.91	0.91	0.723647	1.000000	-
Rv3832c	-	8	140.3	141.0	128.8	132.5	146.8	161.0	-0.014	-0.007	-0.133	-0.093	0.049	0.178	146.4	173.6	137.3	132.5	146.8	171.7	0.96	0.81	0.94	1.00	1.00	0.94	0.438345	1.000000	-
Rv3833	-	10	142.8	184.3	189.6	198.5	200.4	210.8	-0.383	-0.026	0.014	0.079	0.092	0.163	158.6	204.8	210.7	229.1	222.7	234.2	0.90	0.90	0.90	0.87	0.90	0.90	0.864486	1.000000	-
Rv3834c	serS	21	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3835	-	15	201.7	192.3	176.1	200.2	229.7	199.7	0.012	-0.055	-0.179	0.002	0.196	-0.002	206.3	206.1	182.2	200.2	229.7	199.7	0.98	0.93	0.97	1.00	1.00	1.00	0.613505	1.000000	-
Rv3836	-	5	216.7	185.0	153.9	172.8	149.8	176.1	0.295	0.072	-0.185	-0.024	-0.223	0.003	250.0	185.0	171.0	199.4	149.8	176.1	0.87	1.00	0.90	0.87	1.00	1.00	0.657571	1.000000	-
Rv3837c	-	10	261.8	204.8	205.5	210.8	229.2	205.1	0.249	-0.098	-0.093	-0.057	0.060	-0.096	290.9	204.8	228.3	234.3	241.2	205.1	0.90	1.00	0.90	0.90	0.95	1.00	0.597932	1.000000	-
Rv3838c	pheA	11	46.1	54.9	22.4	55.3	34.0	44.2	0.097	0.324	-0.805	0.335	-0.296	0.043	76.1	63.5	54.7	70.2	46.7	48.7	0.61	0.86	0.41	0.79	0.73	0.91	0.022359	0.259338	-
Rv3839	-	15	172.8	183.9	209.0	272.5	283.8	238.8	-0.383	-0.295	-0.115	0.260	0.317	0.073	204.7	190.3	232.3	278.7	304.1	247.0	0.84	0.97	0.90	0.98	0.93	0.97	0.233381	1.000000	-
Rv3840	-	10	351.7	346.8	363.3	341.7	374.9	384.8	-0.035	-0.055	0.011	-0.076	0.056	0.093	363.8	365.0	403.6	341.7	394.6	384.8	0.97	0.95	0.90	1.00	0.95	1.00	0.820785	1.000000	-
Rv3841	bfrB	7	42.8	61.0	52.4	71.6	77.9	59.8	-0.463	0.001	-0.198	0.217	0.330	-0.025	89.9	170.7	122.3	136.7	181.7	93.0	0.48	0.36	0.43	0.52	0.43	0.64	0.808535	1.000000	-
Rv3842c	glpQ1	13	103.6	103.8	126.9	109.6	123.3	123.2	-0.145	-0.142	0.136	-0.068	0.096	0.094	130.4	108.0	157.1	115.5	128.3	123.2	0.79	0.96	0.81	0.95	0.96	1.00	0.185462	1.000000	-
Rv3843c	-	17	26.8	22.2	19.7	27.2	34.2	18.7	0.096	-0.134	-0.273	0.113	0.394	-0.329	97.8	68.5	66.9	92.6	105.6	49.0	0.27	0.32	0.29	0.29	0.32	0.38	0.598325	1.000000	-
Rv3844	-	3	308.7	317.2	284.4	266.1	294.2	267.0	0.091	0.129	-0.026	-0.120	0.022	-0.115	308.7	317.2	284.4	266.1	294.2	267.0	1.00	1.00	1.00	1.00	1.00	1.00	0.994449	1.000000	-
Rv3845	-	5	236.0	234.1	229.2	282.4	178.3	205.0	0.052	0.040	0.010	0.306	-0.343	-0.147	236.0	234.1	229.2	282.4	222.9	205.0	1.00	1.00	1.00	1.00	0.80	1.00	0.476946	1.000000	-
Rv3846	sodA	12	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3847	-	5	0.8	1.0	0.0	1.0	3.3	3.0	-0.169	-0.113	-0.376	-0.123	0.346	0.294	11.6	10.0	0.0	14.4	10.8	14.8	0.07	0.10	0.00	0.07	0.30	0.20	0.784074	1.000000	-
Rv3848	-	8	137.1	136.8	149.2	130.7	122.0	134.8	0.020	0.017	0.138	-0.046	-0.141	-0.003	173.1	199.0	238.8	196.1	150.2	196.1	0.79	0.69	0.62	0.67	0.81	0.69	0.961789	1.000000	-
Rv3849	espR	9	138.0	170.6	95.7	135.7	152.1	109.0	0.046	0.343	-0.461	0.023	0.182	-0.282	138.0	170.6	95.7	135.7	152.1	109.0	1.00	1.00	1.00	1.00	1.00	1.00	0.125730	0.843132	-
Rv3850	-	5	230.3	247.2	224.3	157.5	185.7	205.5	0.141	0.241	0.104	-0.394	-0.162	-0.020	230.3	247.2	224.3	157.5	185.7	205.5	1.00	1.00	1.00	1.00	1.00	1.00	0.282626	1.000000	-
Rv3851	-	2	174.8	129.7	190.7	141.8	147.9	137.0	0.181	-0.236	0.303	-0.112	-0.053	-0.160	174.8	129.7	190.7	141.8	147.9	137.0	1.00	1.00	1.00	1.00	1.00	1.00	0.853548	1.000000	-
Rv3852	hns	4	272.7	240.7	168.7	224.8	226.2	292.4	0.195	0.018	-0.482	-0.078	-0.069	0.294	272.7	240.7	168.7	224.8	226.2	292.4	1.00	1.00	1.00	1.00	1.00	1.00	0.763259	1.000000	-
Rv3853	menG	4	149.8	83.4	95.3	105.5	114.4	117.2	0.417	-0.392	-0.208	-0.069	0.042	0.076	199.7	111.1	127.1	140.7	152.5	117.2	0.75	0.75	0.75	0.75	0.75	1.00	0.115693	0.799142	-
Rv3854c	ethA	30	137.6	141.3	116.8	145.8	139.2	132.9	0.021	0.058	-0.207	0.101	0.036	-0.028	165.2	160.0	140.2	174.9	163.8	150.4	0.83	0.88	0.83	0.83	0.85	0.88	0.958861	1.000000	-
Rv3855	ethR	10	176.4	164.0	152.3	163.8	162.8	141.2	0.136	0.034	-0.070	0.032	0.023	-0.175	176.4	164.0	169.2	163.8	162.8	156.9	1.00	1.00	0.90	1.00	1.00	0.90	0.420081	1.000000	-
Rv3856c	-	8	156.2	146.2	112.8	137.9	141.6	118.0	0.199	0.107	-0.254	0.025	0.062	-0.191	163.0	156.0	120.3	157.6	161.9	125.9	0.96	0.94	0.94	0.88	0.88	0.94	0.787031	1.000000	-
Rv3857c	-	3	214.5	220.3	218.1	254.8	248.7	245.1	-0.121	-0.083	-0.097	0.123	0.089	0.068	214.5	220.3	218.1	254.8	248.7	245.1	1.00	1.00	1.00	1.00	1.00	1.00	0.988907	1.000000	-
Rv3858c	gltD	10	8.0	4.5	14.4	10.7	4.5	1.6	0.080	-0.366	0.659	0.358	-0.369	-0.907	24.0	15.1	48.0	24.8	18.1	10.3	0.33	0.30	0.30	0.43	0.25	0.15	0.003391	0.057570	-
Rv3859c	gltB	72	9.0	2.9	8.1	7.5	3.1	1.3	0.440	-0.377	0.343	0.279	-0.356	-0.711	24.3	13.7	29.8	21.4	13.8	11.0	0.37	0.22	0.27	0.35	0.22	0.12	0.000000	0.000000	-
Rv3860	-	12	307.4	300.0	314.8	292.9	298.9	291.8	0.030	-0.004	0.064	-0.039	-0.010	-0.044	307.4	300.0	314.8	292.9	298.9	291.8	1.00	1.00	1.00	1.00	1.00	1.00	0.999643	1.000000	-
Rv3861	-	1	5.5	0.0	0.0	19.4	29.8	14.1	-0.653	-1.719	-1.719	0.570	1.078	0.215	16.4	0.0	0.0	29.2	29.8	28.2	0.33	0.00	0.00	0.67	1.00	0.50	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3862c	whiB6	6	144.3	157.7	115.7	158.7	172.9	148.5	-0.050	0.073	-0.357	0.082	0.202	-0.011	162.4	189.3	138.9	168.1	172.9	162.0	0.89	0.83	0.83	0.94	1.00	0.92	0.907874	1.000000	-
Rv3863	-	14	34.3	50.3	38.6	62.6	62.6	57.2	-0.511	-0.016	-0.359	0.273	0.274	0.154	95.9	67.1	83.2	67.4	73.1	76.3	0.36	0.75	0.46	0.93	0.86	0.75	0.000011	0.000351	-
Rv3864	-	14	45.2	48.3	41.9	58.1	70.3	44.8	-0.168	-0.084	-0.267	0.162	0.415	-0.180	86.3	64.4	83.8	81.4	93.7	54.6	0.52	0.75	0.50	0.71	0.75	0.82	0.223414	1.000000	-
Rv3865	-	9	57.2	82.0	41.4	48.5	60.1	63.0	-0.035	0.450	-0.458	-0.251	0.031	0.094	73.5	86.9	49.6	62.4	60.1	63.0	0.78	0.94	0.83	0.78	1.00	1.00	0.054835	0.503491	-
Rv3866	-	11	95.2	130.5	129.0	107.5	120.0	139.2	-0.321	0.114	0.097	-0.155	-0.002	0.203	116.4	151.2	157.6	136.4	132.0	145.8	0.82	0.86	0.82	0.79	0.91	0.95	0.786182	1.000000	-
Rv3867	-	5	180.2	160.5	155.2	165.6	166.6	166.2	0.118	-0.044	-0.092	-0.001	0.007	0.004	180.2	160.5	155.2	165.6	166.6	166.2	1.00	1.00	1.00	1.00	1.00	1.00	0.996722	1.000000	-
Rv3868	-	28	149.7	172.3	157.3	144.0	153.9	158.3	-0.057	0.140	0.012	-0.111	-0.018	0.021	172.3	185.6	169.4	159.1	156.7	173.8	0.87	0.93	0.93	0.90	0.98	0.91	0.558857	1.000000	-
Rv3869	-	27	254.8	239.5	234.9	249.9	262.0	231.7	0.053	-0.035	-0.062	0.025	0.092	-0.082	278.9	269.4	269.9	289.2	294.8	245.3	0.91	0.89	0.87	0.86	0.89	0.94	0.942912	1.000000	-
Rv3870	-	36	122.9	119.4	126.8	122.9	131.4	141.1	-0.050	-0.090	-0.006	-0.050	0.043	0.142	138.2	128.3	154.8	135.4	139.2	149.4	0.89	0.93	0.82	0.91	0.94	0.94	0.625257	1.000000	-
Rv3871	-	22	153.8	161.7	157.9	162.3	159.2	153.5	-0.038	0.032	-0.002	0.037	0.010	-0.041	203.0	209.2	224.1	223.1	200.1	187.7	0.76	0.77	0.70	0.73	0.80	0.82	0.997518	1.000000	-
Rv3872	PE35	1	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	TA sites <= 1, not analyzed
Rv3873	PPE68	10	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3874	esxB	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3875	esxA	4	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3876	-	19	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3877	-	25	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3878	-	5	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3879c	-	30	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3880c	-	4	326.6	280.6	318.4	298.8	260.3	242.6	0.179	-0.036	0.143	0.053	-0.143	-0.242	326.6	374.2	424.5	298.8	260.3	277.3	1.00	0.75	0.75	1.00	1.00	0.88	0.353001	1.000000	-
Rv3881c	-	21	227.1	206.3	195.6	192.5	188.3	180.4	0.190	0.055	-0.020	-0.042	-0.073	-0.133	246.6	216.6	216.2	212.8	208.1	180.4	0.92	0.95	0.90	0.90	0.90	1.00	0.635354	1.000000	-
Rv3882c	-	21	266.2	254.0	263.7	231.6	235.5	217.9	0.118	0.052	0.105	-0.078	-0.055	-0.165	284.3	254.0	276.9	231.6	247.3	217.9	0.94	1.00	0.95	1.00	0.95	1.00	0.309818	1.000000	-
Rv3883c	mycP1	14	261.5	263.7	266.5	256.9	241.9	279.6	-0.001	0.011	0.026	-0.026	-0.111	0.094	305.1	263.7	276.4	276.6	282.3	301.1	0.86	1.00	0.96	0.93	0.86	0.93	0.523485	1.000000	-
Rv3884c	-	31	128.2	138.4	149.4	119.9	128.3	135.8	-0.054	0.052	0.159	-0.148	-0.054	0.026	142.0	147.9	162.5	137.6	137.1	150.3	0.90	0.94	0.92	0.87	0.94	0.90	0.934662	1.000000	-
Rv3885c	-	25	130.6	111.5	165.2	116.9	135.5	112.9	0.020	-0.199	0.348	-0.134	0.071	-0.183	155.5	126.7	187.8	139.1	161.3	131.2	0.84	0.88	0.88	0.84	0.84	0.86	0.860131	1.000000	-
Rv3886c	mycP2	22	148.3	115.9	129.8	122.8	127.8	136.1	0.182	-0.161	-0.004	-0.080	-0.025	0.062	155.4	127.4	142.8	124.7	133.9	139.2	0.95	0.91	0.91	0.98	0.95	0.98	0.724289	1.000000	-
Rv3887c	-	26	124.9	101.6	120.6	119.3	118.1	124.4	0.077	-0.208	0.028	0.013	-0.001	0.071	149.9	122.9	153.0	136.8	130.6	134.8	0.83	0.83	0.79	0.87	0.90	0.92	0.911794	1.000000	-
Rv3888c	-	26	22.2	24.6	21.2	25.8	21.7	25.9	-0.069	0.049	-0.126	0.108	-0.097	0.115	54.2	53.2	61.2	64.9	56.5	50.0	0.41	0.46	0.35	0.40	0.38	0.52	0.906411	1.000000	-
Rv3889c	-	15	311.9	288.8	310.3	265.8	253.2	233.8	0.167	0.058	0.159	-0.060	-0.129	-0.242	334.2	320.9	332.4	278.2	261.9	233.8	0.93	0.90	0.93	0.96	0.97	1.00	0.841552	1.000000	-
Rv3890c	esxC	5	344.5	347.0	323.4	335.5	334.5	345.7	0.025	0.036	-0.065	-0.013	-0.017	0.030	344.5	347.0	323.4	335.5	334.5	432.1	1.00	1.00	1.00	1.00	1.00	0.80	0.396123	1.000000	-
Rv3891c	esxD	8	101.2	94.3	132.5	106.5	106.4	121.6	-0.120	-0.217	0.253	-0.050	-0.051	0.133	151.8	125.8	192.8	170.4	130.9	129.7	0.67	0.75	0.69	0.62	0.81	0.94	0.667728	1.000000	-
Rv3892c	PPE69	10	193.9	192.8	194.0	155.3	189.6	149.7	0.111	0.103	0.111	-0.200	0.079	-0.252	200.6	192.8	194.0	155.3	189.6	149.7	0.97	1.00	1.00	1.00	1.00	1.00	0.777730	1.000000	-
Rv3893c	PE36	2	750.0	652.0	635.6	743.1	597.6	506.3	0.211	0.010	-0.026	0.197	-0.115	-0.352	750.0	652.0	635.6	743.1	597.6	506.3	1.00	1.00	1.00	1.00	1.00	1.00	0.101897	0.747564	-
Rv3894c	-	45	178.3	156.1	171.4	150.8	150.5	140.5	0.170	-0.016	0.114	-0.064	-0.067	-0.163	189.5	165.3	181.4	157.9	159.4	150.6	0.94	0.94	0.94	0.96	0.94	0.93	0.980740	1.000000	-
Rv3895c	-	11	269.8	206.1	223.4	222.6	225.4	254.4	0.204	-0.177	-0.063	-0.068	-0.050	0.121	287.2	226.7	258.7	244.9	225.4	266.6	0.94	0.91	0.86	0.91	1.00	0.95	0.876419	1.000000	-
Rv3896c	-	14	281.2	229.1	266.3	232.0	225.6	218.3	0.212	-0.078	0.135	-0.060	-0.099	-0.146	281.2	229.1	266.3	232.0	225.6	218.3	1.00	1.00	1.00	1.00	1.00	1.00	0.634489	1.000000	-
Rv3897c	-	6	203.2	228.4	262.7	208.9	217.0	243.3	-0.157	0.007	0.205	-0.119	-0.065	0.096	203.2	228.4	262.7	208.9	217.0	243.3	1.00	1.00	1.00	1.00	1.00	1.00	0.943790	1.000000	-
Rv3898c	-	6	217.4	255.7	236.5	197.3	198.0	258.0	-0.062	0.167	0.057	-0.198	-0.194	0.180	217.4	255.7	236.5	197.3	198.0	258.0	1.00	1.00	1.00	1.00	1.00	1.00	0.846812	1.000000	-
Rv3899c	-	15	372.6	354.8	399.7	351.6	320.9	278.3	0.104	0.034	0.204	0.022	-0.108	-0.311	409.0	409.3	444.1	376.7	332.0	309.2	0.91	0.87	0.90	0.93	0.97	0.90	0.964516	1.000000	-
Rv3900c	-	14	157.3	138.7	153.0	157.7	133.6	123.9	0.123	-0.053	0.084	0.127	-0.105	-0.210	227.9	176.5	194.7	189.2	162.6	144.5	0.69	0.79	0.79	0.83	0.82	0.86	0.950786	1.000000	-
Rv3901c	-	14	416.1	377.9	398.1	400.0	341.4	370.1	0.115	-0.022	0.051	0.059	-0.167	-0.052	426.3	377.9	412.8	420.0	341.4	398.6	0.98	1.00	0.96	0.95	1.00	0.93	0.863980	1.000000	-
Rv3902c	-	23	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3903c	-	46	171.6	146.6	158.1	148.4	137.0	163.9	0.149	-0.072	0.035	-0.054	-0.166	0.085	229.9	168.5	184.2	184.5	157.6	195.9	0.75	0.87	0.86	0.80	0.87	0.84	0.355012	1.000000	-
Rv3904c	esxE	2	149.0	104.7	141.6	145.8	176.8	111.6	0.104	-0.385	0.034	0.074	0.343	-0.297	178.8	209.4	283.2	145.8	176.8	111.6	0.83	0.50	0.50	1.00	1.00	1.00	0.346171	1.000000	-
Rv3905c	esxF	5	323.6	259.9	280.0	303.5	279.9	333.0	0.124	-0.188	-0.082	0.033	-0.082	0.164	323.6	259.9	280.0	303.5	279.9	333.0	1.00	1.00	1.00	1.00	1.00	1.00	0.986830	1.000000	-
Rv3906c	-	8	269.3	239.0	258.4	220.1	219.4	226.6	0.170	0.001	0.111	-0.115	-0.120	-0.074	269.3	239.0	275.6	240.1	219.4	259.0	1.00	1.00	0.94	0.92	1.00	0.88	0.694325	1.000000	-
Rv3907c	pcnA	17	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed
Rv3908	-	11	35.6	58.5	32.9	58.0	59.7	37.3	-0.358	0.288	-0.454	0.277	0.316	-0.299	73.4	85.8	72.5	95.7	87.6	63.1	0.48	0.68	0.45	0.61	0.68	0.59	0.883797	1.000000	-
Rv3909	-	37	0.0	0.0	0.0	0.3	0.1	0.0	-0.018	-0.018	-0.018	0.056	0.016	-0.018	0.0	0.0	0.0	14.6	9.0	0.0	0.00	0.00	0.00	0.02	0.01	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3910	-	49	35.5	61.6	36.4	74.4	79.0	50.8	-0.598	0.120	-0.565	0.374	0.455	-0.137	121.3	194.7	123.1	227.9	242.0	155.4	0.29	0.32	0.30	0.33	0.33	0.33	0.041761	0.422907	-
Rv3911	sigM	9	227.8	227.5	258.1	263.8	234.0	245.0	-0.090	-0.091	0.087	0.118	-0.051	0.013	227.8	227.5	258.1	263.8	234.0	245.0	1.00	1.00	1.00	1.00	1.00	1.00	0.982475	1.000000	-
Rv3912	-	8	362.9	331.6	325.5	337.3	276.0	270.7	0.191	0.062	0.036	0.087	-0.198	-0.225	414.8	378.9	347.2	404.7	294.4	309.4	0.88	0.88	0.94	0.83	0.94	0.88	0.981779	1.000000	-
Rv3913	trxB2	16	0.0	0.0	0.4	0.0	0.0	0.0	-0.019	-0.019	0.091	-0.019	-0.019	-0.019	0.0	0.0	12.6	0.0	0.0	0.0	0.00	0.00	0.03	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3914	trxC	5	6.0	15.3	6.3	2.0	3.6	11.5	-0.176	0.705	-0.138	-0.836	-0.533	0.406	15.0	21.8	31.5	14.8	18.0	28.7	0.40	0.70	0.20	0.13	0.20	0.40	0.047405	0.458493	-
Rv3915	-	23	0.0	0.2	0.0	0.0	0.0	0.0	-0.010	0.051	-0.010	-0.010	-0.010	-0.010	0.0	10.0	0.0	0.0	0.0	0.0	0.00	0.02	0.00	0.00	0.00	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3916c	-	8	216.8	165.2	207.4	145.1	147.3	178.9	0.287	-0.095	0.224	-0.276	-0.255	0.017	226.2	176.3	207.4	151.4	157.1	178.9	0.96	0.94	1.00	0.96	0.94	1.00	0.971582	1.000000	-
Rv3917c	parB	17	1.0	1.8	0.0	3.2	0.7	0.9	-0.064	0.118	-0.325	0.395	-0.139	-0.094	16.9	10.2	0.0	18.3	11.8	9.9	0.06	0.18	0.00	0.18	0.06	0.09	0.038551	0.397463	-
Rv3918c	parA	18	6.5	11.6	5.7	4.0	9.0	5.3	-0.057	0.463	-0.162	-0.421	0.220	-0.227	44.2	23.1	68.8	17.9	21.6	27.1	0.15	0.50	0.08	0.22	0.42	0.19	0.000014	0.000433	-
Rv3919c	gidB	13	120.7	117.0	117.3	86.1	98.6	101.9	0.168	0.124	0.128	-0.298	-0.112	-0.066	130.8	126.7	132.6	98.7	102.5	110.4	0.92	0.92	0.88	0.87	0.96	0.92	0.928791	1.000000	-
Rv3920c	-	3	225.5	298.3	226.3	302.8	344.7	275.6	-0.300	0.095	-0.295	0.117	0.301	-0.017	290.0	358.0	339.5	454.2	413.7	275.6	0.78	0.83	0.67	0.67	0.83	1.00	0.912026	1.000000	-
Rv3921c	-	20	0.0	0.3	0.0	0.0	0.2	0.0	-0.023	0.050	-0.023	-0.023	0.040	-0.023	0.0	10.4	0.0	0.0	9.0	0.0	0.00	0.03	0.00	0.00	0.03	0.00	1.000000	1.000000	low saturation (<15%) across all conditions (pan-growth-defect) - not analyzed
Rv3922c	-	11	63.2	89.6	76.9	63.4	84.9	91.4	-0.287	0.184	-0.023	-0.283	0.111	0.211	83.5	109.5	112.8	87.2	116.7	125.6	0.76	0.82	0.68	0.73	0.73	0.73	0.827593	1.000000	-
Rv3923c	rnpA	3	2.5	1.7	2.1	1.6	0.0	1.6	0.191	0.019	0.109	0.014	-0.396	-0.003	22.6	10.0	12.6	14.8	0.0	9.4	0.11	0.17	0.17	0.11	0.00	0.17	0.982257	1.000000	-
Rv3924c	rpmH	2	0.0	0.0	0.0	0.0	0.0	0.0	0.000	0.000	0.000	0.000	0.000	0.000	0.0	0.0	0.0	0.0	0.0	0.0	0.00	0.00	0.00	0.00	0.00	0.00	1.000000	1.000000	pan-essential (no counts in all conditions) - not analyzed